| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is yddH [H]
Identifier: 18310114
GI number: 18310114
Start: 1324849
End: 1327800
Strand: Direct
Name: yddH [H]
Synonym: CPE1132
Alternate gene names: 18310114
Gene position: 1324849-1327800 (Clockwise)
Preceding gene: 18310113
Following gene: 18310115
Centisome position: 43.7
GC content: 30.79
Gene sequence:
>2952_bases TTGCAATATTATAAGATAGATAATTATAACTTTGTTAAAAATGGAGATATTACTTTACAACCTATAGATGGAAAACTAAG ATTAGAATTAAATACTGGACTTAATGAAATAGAATTTGAATTAGGCTATGACAAAGAAAAGAGATGGACTAGAATAGAAG AATGGGGAGTAATAAAGACAGATGTTTTCTATTCTAAAAACAAACAATTATATAGAATCTATAATATAGATAAAGGTATG TTTAGCTTAAAGATAAAAGCAAGGCATATCTTTTTTGATTTAGTAAAACATAATTTATTAGATACAAGAGCAGTAGCTTG TAATGGTCAGCAAGCTTTAGAAAGAATATTAGAAGGGACTAAGTATAAAGGACATAGTGATATAGATAGAATTAATACTT GTTATTTTTGTGTTACTAATATCGTACAAGCAATAAATGGAGAAAATGATAATAGTTTTAGAAACCGTTGGGGTGGAGAA ATGCTATTCGATAATTTTGACATCTATATAAATAATAGAATAGGTGGAGATTATGGAGTAAGAGTTAACTATAGTAGAAA TATGGAAGATGTTAATCTAATTATAGATAGAGATAATATTGTAACTAGAGCATACCCTAGAGCTTTTGATGGCATAATGT TGCCTGAAAAATATATAGATTCTCCATTAATTAATAAATATCCTATTGTTTGTGAAGATTATATAGATATGAGTGATTTA AAGCTTAAAGATCCTAATACTTCTAATGATGAAGGTTTTGATACTGAAGAAGAACTTTACCAAGCAATGAGAGAAAGAAT GAAAAAACTTTATGAAGGTGGAATTGATAAACCTTCTATAAGTGGTAATGTTAAAGTTGCTATGCTAGAAAATAGTATAG AGTATAAAGACTTTAAAGGCTTAGTTAATATTGGTATAGGAGATACAGTAACAGTTAACCATAAAGACATAGATATAGAT ATGAAAACTAGGGCTATTACTATTGAATGGAACTTAGTTACTAAGAAATATGAAAATATAGAGTTTGGTGATGTAGAAGT AAATTACTTTGCTAAACAAGATATAGCAAGGGAACAATTAGATAATATCTTAAATAAAAATGGTACTGTTAATGCAGGGG AAATGGAAGGTATTATAAATGCTATGCAAACTAAGTTTAAAGCACTTAGGGATGTAGCACAACCACAACATACACTAGGT ATGTTATTTGAAGATAAAATTAAAGGTAGTGCAACTTATGGAGCCATGGCGATTGGTTCTATGGGATTTATGATAGCATC TGAAAGAACCGAAGATGATAAAGATTGGAATTGGAAAACATTCGGTAGTGGACAAGGATTTTTTGCAGATTGGCTAGTAG GTAAACTTAGAACGGTATTAATAGAAAACATGGATGGTAGTTTCCAAATGGATTTAAATAAACCAGGTGGAATGATATTT AAAAATAATGGTCTTAAATCTATGCTTATAGAGAACAATGCATTAAAAATGTTCAATTGGAAAAAAGATGAACAATATAT AGGTGGACTTACATCTTTAATAGCTGGAGACAATAAAGAAAAACCTTTAGTAGGTTTAACAAACTCTCCTAAAGCTGCTA TAAATATAGGTTATGAGAAAAAAGAAGATACTAAAGTAGTGCCTTCCTATGTTCAATTCGATAAGTACAATGTATTAGGC GATGAAGATGGTAAACCAATTAGAATTTGGGAAGATATAGATGCAAAAGGCAGTAGTGTTTATAATATTAATTTGAAAAG TAAAGACGATAAAAGCTGGATTACTGTAAAAGATGGAGAATTATCTTTAAAATATAAAGACCAATTCTTAATGATAACAG ATAAGGGGATAACTTTAAAAGGTGATGTTATTTTAGACGGAGTTATAAAAAATACAAGTGGCAATTTAGTGCTAGATCCT AATGCTCCACAAGGTGGAGGCGTTGATGGTTCTGATTCATTAAGAAATTCAGTTGTTAATAGTGCTAGAAAACTTATAGG TAAACCTTATGTGTGGGGTGGAAATTATCCACCTTTAGGTTCTGATGTTGGTACAGATTGTTCAGGATTAATGCAATGGA GTTATCATGACAATGGAATTACGTTAAGTAGAACTACCTATACACAAATAAACGAAGGGTTTGAAGTAAAAGAAAATGAA TTAAAACCTGGAGATTTAATTTTTATGCATTTCACTGCACCAAATACACCGCAACATGTATTTATGTATAGTGGTGAAAA AGATGGACAACATATGTGTGTTGAAGCACCTAGAACTGGATTAAATATAAGAGAGAGAGCATTTACATGGGGTTCTGATT ATAGAGCAAGAAGAATAATAAAAGATACCCCAGGAGGAAATGTAAATGGAAATGCTGGAACTAAAGCAAGTAAAAATATA ATTTATTATGTTAAAGGTATAGAAGGATATGCACCTTACCATTATTATGATTCCGTTGGGGTTAAGACACTTGGCTATGG AATGACAGGAAGCGAATTATCTGGTGTAAGTGTTCCATTAAGTGAAACAAGTGCTACACATTATTTAGTAGATAATTTTA ATAGACTTTATTATACACCAGTTTTAAATATGCTTAAAGCTAGAGGAGCTACTAATATGTTACAAAGAGAAGTAGATGCA TTAGCAAGTTTTGCATATAATTGTGGTTTAGACTCTAATGGTTTAGGCGGTAGCCAATTATTAAAAAAATATGTAGCTGG AGAAAGAGGGGAAAGCATACATAATGAATTTAAAAAATGGGTGCATGGTGGTGGACAAGTTCTACCAGGATTAGTTAGAA GAAGAGAAGAAGAATGGAAGATATTTAGTGGTTCTAGTTCTCCAGTAGGAGGATATAATACAACACCTTCTATATCTTAC ATAGGAACTAATGGTTTACCAACAGGTAGAGTTGTAACTGAAAATGGTGGATATGGAGCAAGTCCATATTAG
Upstream 100 bases:
>100_bases TGGAGATTATCCATTATTGGAATATGGAGAAAATAACATAAGTTTTAATGGCAATGTTAGTAAAATAGAAATTAAACCAA GATGGAGGGAGGTGTAATAG
Downstream 100 bases:
>100_bases AGAGTAGATTAATTTCTACTCTTTTTTATTACAAGAAAGGAGAATATTATGCAATATATAGAAACTAAAACAGTTTATAT AGATAGAGATGAGCTAATAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 983; Mature: 983
Protein sequence:
>983_residues MQYYKIDNYNFVKNGDITLQPIDGKLRLELNTGLNEIEFELGYDKEKRWTRIEEWGVIKTDVFYSKNKQLYRIYNIDKGM FSLKIKARHIFFDLVKHNLLDTRAVACNGQQALERILEGTKYKGHSDIDRINTCYFCVTNIVQAINGENDNSFRNRWGGE MLFDNFDIYINNRIGGDYGVRVNYSRNMEDVNLIIDRDNIVTRAYPRAFDGIMLPEKYIDSPLINKYPIVCEDYIDMSDL KLKDPNTSNDEGFDTEEELYQAMRERMKKLYEGGIDKPSISGNVKVAMLENSIEYKDFKGLVNIGIGDTVTVNHKDIDID MKTRAITIEWNLVTKKYENIEFGDVEVNYFAKQDIAREQLDNILNKNGTVNAGEMEGIINAMQTKFKALRDVAQPQHTLG MLFEDKIKGSATYGAMAIGSMGFMIASERTEDDKDWNWKTFGSGQGFFADWLVGKLRTVLIENMDGSFQMDLNKPGGMIF KNNGLKSMLIENNALKMFNWKKDEQYIGGLTSLIAGDNKEKPLVGLTNSPKAAINIGYEKKEDTKVVPSYVQFDKYNVLG DEDGKPIRIWEDIDAKGSSVYNINLKSKDDKSWITVKDGELSLKYKDQFLMITDKGITLKGDVILDGVIKNTSGNLVLDP NAPQGGGVDGSDSLRNSVVNSARKLIGKPYVWGGNYPPLGSDVGTDCSGLMQWSYHDNGITLSRTTYTQINEGFEVKENE LKPGDLIFMHFTAPNTPQHVFMYSGEKDGQHMCVEAPRTGLNIRERAFTWGSDYRARRIIKDTPGGNVNGNAGTKASKNI IYYVKGIEGYAPYHYYDSVGVKTLGYGMTGSELSGVSVPLSETSATHYLVDNFNRLYYTPVLNMLKARGATNMLQREVDA LASFAYNCGLDSNGLGGSQLLKKYVAGERGESIHNEFKKWVHGGGQVLPGLVRRREEEWKIFSGSSSPVGGYNTTPSISY IGTNGLPTGRVVTENGGYGASPY
Sequences:
>Translated_983_residues MQYYKIDNYNFVKNGDITLQPIDGKLRLELNTGLNEIEFELGYDKEKRWTRIEEWGVIKTDVFYSKNKQLYRIYNIDKGM FSLKIKARHIFFDLVKHNLLDTRAVACNGQQALERILEGTKYKGHSDIDRINTCYFCVTNIVQAINGENDNSFRNRWGGE MLFDNFDIYINNRIGGDYGVRVNYSRNMEDVNLIIDRDNIVTRAYPRAFDGIMLPEKYIDSPLINKYPIVCEDYIDMSDL KLKDPNTSNDEGFDTEEELYQAMRERMKKLYEGGIDKPSISGNVKVAMLENSIEYKDFKGLVNIGIGDTVTVNHKDIDID MKTRAITIEWNLVTKKYENIEFGDVEVNYFAKQDIAREQLDNILNKNGTVNAGEMEGIINAMQTKFKALRDVAQPQHTLG MLFEDKIKGSATYGAMAIGSMGFMIASERTEDDKDWNWKTFGSGQGFFADWLVGKLRTVLIENMDGSFQMDLNKPGGMIF KNNGLKSMLIENNALKMFNWKKDEQYIGGLTSLIAGDNKEKPLVGLTNSPKAAINIGYEKKEDTKVVPSYVQFDKYNVLG DEDGKPIRIWEDIDAKGSSVYNINLKSKDDKSWITVKDGELSLKYKDQFLMITDKGITLKGDVILDGVIKNTSGNLVLDP NAPQGGGVDGSDSLRNSVVNSARKLIGKPYVWGGNYPPLGSDVGTDCSGLMQWSYHDNGITLSRTTYTQINEGFEVKENE LKPGDLIFMHFTAPNTPQHVFMYSGEKDGQHMCVEAPRTGLNIRERAFTWGSDYRARRIIKDTPGGNVNGNAGTKASKNI IYYVKGIEGYAPYHYYDSVGVKTLGYGMTGSELSGVSVPLSETSATHYLVDNFNRLYYTPVLNMLKARGATNMLQREVDA LASFAYNCGLDSNGLGGSQLLKKYVAGERGESIHNEFKKWVHGGGQVLPGLVRRREEEWKIFSGSSSPVGGYNTTPSISY IGTNGLPTGRVVTENGGYGASPY >Mature_983_residues MQYYKIDNYNFVKNGDITLQPIDGKLRLELNTGLNEIEFELGYDKEKRWTRIEEWGVIKTDVFYSKNKQLYRIYNIDKGM FSLKIKARHIFFDLVKHNLLDTRAVACNGQQALERILEGTKYKGHSDIDRINTCYFCVTNIVQAINGENDNSFRNRWGGE MLFDNFDIYINNRIGGDYGVRVNYSRNMEDVNLIIDRDNIVTRAYPRAFDGIMLPEKYIDSPLINKYPIVCEDYIDMSDL KLKDPNTSNDEGFDTEEELYQAMRERMKKLYEGGIDKPSISGNVKVAMLENSIEYKDFKGLVNIGIGDTVTVNHKDIDID MKTRAITIEWNLVTKKYENIEFGDVEVNYFAKQDIAREQLDNILNKNGTVNAGEMEGIINAMQTKFKALRDVAQPQHTLG MLFEDKIKGSATYGAMAIGSMGFMIASERTEDDKDWNWKTFGSGQGFFADWLVGKLRTVLIENMDGSFQMDLNKPGGMIF KNNGLKSMLIENNALKMFNWKKDEQYIGGLTSLIAGDNKEKPLVGLTNSPKAAINIGYEKKEDTKVVPSYVQFDKYNVLG DEDGKPIRIWEDIDAKGSSVYNINLKSKDDKSWITVKDGELSLKYKDQFLMITDKGITLKGDVILDGVIKNTSGNLVLDP NAPQGGGVDGSDSLRNSVVNSARKLIGKPYVWGGNYPPLGSDVGTDCSGLMQWSYHDNGITLSRTTYTQINEGFEVKENE LKPGDLIFMHFTAPNTPQHVFMYSGEKDGQHMCVEAPRTGLNIRERAFTWGSDYRARRIIKDTPGGNVNGNAGTKASKNI IYYVKGIEGYAPYHYYDSVGVKTLGYGMTGSELSGVSVPLSETSATHYLVDNFNRLYYTPVLNMLKARGATNMLQREVDA LASFAYNCGLDSNGLGGSQLLKKYVAGERGESIHNEFKKWVHGGGQVLPGLVRRREEEWKIFSGSSSPVGGYNTTPSISY IGTNGLPTGRVVTENGGYGASPY
Specific function: Unknown
COG id: COG4926
COG function: function code S; Phage-related protein
Gene ontology:
Cell location: Attached To The Membrane By A Lipid Anchor [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nlpC/p60 family [H]
Homologues:
Organism=Escherichia coli, GI1786421, Length=145, Percent_Identity=35.8620689655172, Blast_Score=69, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008258 - InterPro: IPR000064 [H]
Pfam domain/function: PF00877 NLPC_P60; PF01464 SLT [H]
EC number: NA
Molecular weight: Translated: 110429; Mature: 110429
Theoretical pI: Translated: 5.90; Mature: 5.90
Prosite motif: PS00037 MYB_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQYYKIDNYNFVKNGDITLQPIDGKLRLELNTGLNEIEFELGYDKEKRWTRIEEWGVIKT CCEEEECCEEEEECCCEEEEECCCEEEEEECCCCCEEEEEECCCCCHHHCCHHHCCCEEE DVFYSKNKQLYRIYNIDKGMFSLKIKARHIFFDLVKHNLLDTRAVACNGQQALERILEGT EEEECCCCCEEEEEECCCCEEEEEEEHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHCCC KYKGHSDIDRINTCYFCVTNIVQAINGENDNSFRNRWGGEMLFDNFDIYINNRIGGDYGV CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEECEEEEEECCCCCCEEE RVNYSRNMEDVNLIIDRDNIVTRAYPRAFDGIMLPEKYIDSPLINKYPIVCEDYIDMSDL EEEECCCCCEEEEEEECCCEEEECCCHHHCCCCCCHHHCCCCCCCCCCEEEECCCCCCCC KLKDPNTSNDEGFDTEEELYQAMRERMKKLYEGGIDKPSISGNVKVAMLENSIEYKDFKG EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCC LVNIGIGDTVTVNHKDIDIDMKTRAITIEWNLVTKKYENIEFGDVEVNYFAKQDIAREQL EEEECCCCEEEECCCEEEEEEEEEEEEEEEEEEEEECCCCEECCEEEEEEHHHHHHHHHH DNILNKNGTVNAGEMEGIINAMQTKFKALRDVAQPQHTLGMLFEDKIKGSATYGAMAIGS HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHCC MGFMIASERTEDDKDWNWKTFGSGQGFFADWLVGKLRTVLIENMDGSFQMDLNKPGGMIF CCEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEE KNNGLKSMLIENNALKMFNWKKDEQYIGGLTSLIAGDNKEKPLVGLTNSPKAAINIGYEK ECCCCEEEEEECCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEECCCC KEDTKVVPSYVQFDKYNVLGDEDGKPIRIWEDIDAKGSSVYNINLKSKDDKSWITVKDGE CCCCCCCCHHHEECCEEECCCCCCCCEEEEECCCCCCCEEEEEEECCCCCCCEEEEECCE LSLKYKDQFLMITDKGITLKGDVILDGVIKNTSGNLVLDPNAPQGGGVDGSDSLRNSVVN EEEEECCEEEEEECCCEEEECCEEEEEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHH SARKLIGKPYVWGGNYPPLGSDVGTDCSGLMQWSYHDNGITLSRTTYTQINEGFEVKENE HHHHHHCCCEEECCCCCCCCCCCCCCCHHEEEEEEECCCEEEEEEEHEECCCCCCCCCCC LKPGDLIFMHFTAPNTPQHVFMYSGEKDGQHMCVEAPRTGLNIRERAFTWGSDYRARRII CCCCCEEEEEEECCCCCCEEEEECCCCCCCEEEEECCCCCCCCHHHEEECCCCHHHCEEE KDTPGGNVNGNAGTKASKNIIYYVKGIEGYAPYHYYDSVGVKTLGYGMTGSELSGVSVPL ECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCEEECCCCCCCCCCCEEEEC SETSATHYLVDNFNRLYYTPVLNMLKARGATNMLQREVDALASFAYNCGLDSNGLGGSQL CCCCCCEEEECCCCEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH LKKYVAGERGESIHNEFKKWVHGGGQVLPGLVRRREEEWKIFSGSSSPVGGYNTTPSISY HHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCEEE IGTNGLPTGRVVTENGGYGASPY EECCCCCCCEEEECCCCCCCCCC >Mature Secondary Structure MQYYKIDNYNFVKNGDITLQPIDGKLRLELNTGLNEIEFELGYDKEKRWTRIEEWGVIKT CCEEEECCEEEEECCCEEEEECCCEEEEEECCCCCEEEEEECCCCCHHHCCHHHCCCEEE DVFYSKNKQLYRIYNIDKGMFSLKIKARHIFFDLVKHNLLDTRAVACNGQQALERILEGT EEEECCCCCEEEEEECCCCEEEEEEEHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHCCC KYKGHSDIDRINTCYFCVTNIVQAINGENDNSFRNRWGGEMLFDNFDIYINNRIGGDYGV CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEECEEEEEECCCCCCEEE RVNYSRNMEDVNLIIDRDNIVTRAYPRAFDGIMLPEKYIDSPLINKYPIVCEDYIDMSDL EEEECCCCCEEEEEEECCCEEEECCCHHHCCCCCCHHHCCCCCCCCCCEEEECCCCCCCC KLKDPNTSNDEGFDTEEELYQAMRERMKKLYEGGIDKPSISGNVKVAMLENSIEYKDFKG EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCC LVNIGIGDTVTVNHKDIDIDMKTRAITIEWNLVTKKYENIEFGDVEVNYFAKQDIAREQL EEEECCCCEEEECCCEEEEEEEEEEEEEEEEEEEEECCCCEECCEEEEEEHHHHHHHHHH DNILNKNGTVNAGEMEGIINAMQTKFKALRDVAQPQHTLGMLFEDKIKGSATYGAMAIGS HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHCC MGFMIASERTEDDKDWNWKTFGSGQGFFADWLVGKLRTVLIENMDGSFQMDLNKPGGMIF CCEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEE KNNGLKSMLIENNALKMFNWKKDEQYIGGLTSLIAGDNKEKPLVGLTNSPKAAINIGYEK ECCCCEEEEEECCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEECCCC KEDTKVVPSYVQFDKYNVLGDEDGKPIRIWEDIDAKGSSVYNINLKSKDDKSWITVKDGE CCCCCCCCHHHEECCEEECCCCCCCCEEEEECCCCCCCEEEEEEECCCCCCCEEEEECCE LSLKYKDQFLMITDKGITLKGDVILDGVIKNTSGNLVLDPNAPQGGGVDGSDSLRNSVVN EEEEECCEEEEEECCCEEEECCEEEEEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHH SARKLIGKPYVWGGNYPPLGSDVGTDCSGLMQWSYHDNGITLSRTTYTQINEGFEVKENE HHHHHHCCCEEECCCCCCCCCCCCCCCHHEEEEEEECCCEEEEEEEHEECCCCCCCCCCC LKPGDLIFMHFTAPNTPQHVFMYSGEKDGQHMCVEAPRTGLNIRERAFTWGSDYRARRII CCCCCEEEEEEECCCCCCEEEEECCCCCCCEEEEECCCCCCCCHHHEEECCCCHHHCEEE KDTPGGNVNGNAGTKASKNIIYYVKGIEGYAPYHYYDSVGVKTLGYGMTGSELSGVSVPL ECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCEEECCCCCCCCCCCEEEEC SETSATHYLVDNFNRLYYTPVLNMLKARGATNMLQREVDALASFAYNCGLDSNGLGGSQL CCCCCCEEEECCCCEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH LKKYVAGERGESIHNEFKKWVHGGGQVLPGLVRRREEEWKIFSGSSSPVGGYNTTPSISY HHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCEEE IGTNGLPTGRVVTENGGYGASPY EECCCCCCCEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]