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The map label for this gene is ydcM [C]

Identifier: 18309650

GI number: 18309650

Start: 831763

End: 832623

Strand: Direct

Name: ydcM [C]

Synonym: CPE0668

Alternate gene names: 18309650

Gene position: 831763-832623 (Clockwise)

Preceding gene: 18309649

Following gene: 18309651

Centisome position: 27.44

GC content: 29.85

Gene sequence:

>861_bases
TTGAAAATCTTGGTGCTGGATATGATAAGTATTACAAAAAAAACAGGTGGCAGACCTAAATTTAAGTCTAAGAAAAATGA
AATACAATCTTATACTACTAAATTAGTAAAAGCTAAAGGTAATGTAAATATTGAGATAGTAGGTAAAGGAATTAAACTAC
CTAAACTTGGATTAGTTAAGATAGAAAATTCAAGAAATGTAGATGGAAATATTAAAAGAGTTACTGTGAGCAGAACACAA
TCTGGTAAATATTTTGCATCTATTCTTTGTGATGTAAATATTCAAGAATTACCTAAAATAGATAAAAAAGTTGGTGTAGA
TGTTGGATTAAAAACTTTTGCTGTTTGTTCTGATGGATATGAAGAAGCTAATCCTAAACACTTTAGAAAGGCAGAAAAAA
GACTTATTAAACTTCAAAGAGATTTAGTTCGTAAAGAATATAACTCTAAAAACTATCACAAAAATAGAATTATGATTGCT
AAATTACATGAAAGGATAGCAAATCAAAGAATGGACTTCTTACAAAAATTTTCAACTAAGCTAATTAGAGAAAACCAATC
AATAGCCATTGAAGATTTAAGAGTTTCAAATATGCTTAAAAACCACAAACTTGCTAAAGTAATTTCAGAAGCAAGTTGGT
CAGAATTTAGAAGAATGCTAGAATACAAGGCTGAATGGTATGGTAGAGAAATAGTAATTGCTCCACCAGACTATGCAAGC
TCTCAACTATGTTCTGAATGTGGCTATAAGAATATAGAAGTTAAAAACCTAGGTCTAAGAGAATGGATATGTCCCGAATG
TGGAACACACCATCAAAGAGACCTTAATGCTTCAATAAACTTGGAAAAGCTGATAGCTTAA

Upstream 100 bases:

>100_bases
GAGTTCTTTAATAAAGCCAATTCAATTAAAGATATAGCTAAATTAAAGAAAAGCTATGATTGGCTTAAAGAAGTAGATAG
CATAGCACTACAGGCTTCTG

Downstream 100 bases:

>100_bases
ACTATTGGTATCCAACGAGGTCGGAACGCCCTTGTTAGCTTGGTTAATCTCACACCGTTAGGTGTGTTGCCCAAGAATCT
TGGCATTTCAATGCCGAGTA

Product: transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MKILVLDMISITKKTGGRPKFKSKKNEIQSYTTKLVKAKGNVNIEIVGKGIKLPKLGLVKIENSRNVDGNIKRVTVSRTQ
SGKYFASILCDVNIQELPKIDKKVGVDVGLKTFAVCSDGYEEANPKHFRKAEKRLIKLQRDLVRKEYNSKNYHKNRIMIA
KLHERIANQRMDFLQKFSTKLIRENQSIAIEDLRVSNMLKNHKLAKVISEASWSEFRRMLEYKAEWYGREIVIAPPDYAS
SQLCSECGYKNIEVKNLGLREWICPECGTHHQRDLNASINLEKLIA

Sequences:

>Translated_286_residues
MKILVLDMISITKKTGGRPKFKSKKNEIQSYTTKLVKAKGNVNIEIVGKGIKLPKLGLVKIENSRNVDGNIKRVTVSRTQ
SGKYFASILCDVNIQELPKIDKKVGVDVGLKTFAVCSDGYEEANPKHFRKAEKRLIKLQRDLVRKEYNSKNYHKNRIMIA
KLHERIANQRMDFLQKFSTKLIRENQSIAIEDLRVSNMLKNHKLAKVISEASWSEFRRMLEYKAEWYGREIVIAPPDYAS
SQLCSECGYKNIEVKNLGLREWICPECGTHHQRDLNASINLEKLIA
>Mature_286_residues
MKILVLDMISITKKTGGRPKFKSKKNEIQSYTTKLVKAKGNVNIEIVGKGIKLPKLGLVKIENSRNVDGNIKRVTVSRTQ
SGKYFASILCDVNIQELPKIDKKVGVDVGLKTFAVCSDGYEEANPKHFRKAEKRLIKLQRDLVRKEYNSKNYHKNRIMIA
KLHERIANQRMDFLQKFSTKLIRENQSIAIEDLRVSNMLKNHKLAKVISEASWSEFRRMLEYKAEWYGREIVIAPPDYAS
SQLCSECGYKNIEVKNLGLREWICPECGTHHQRDLNASINLEKLIA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=249, Percent_Identity=36.5461847389558, Blast_Score=137, Evalue=7e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 32879; Mature: 32879

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILVLDMISITKKTGGRPKFKSKKNEIQSYTTKLVKAKGNVNIEIVGKGIKLPKLGLVK
CEEEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEE
IENSRNVDGNIKRVTVSRTQSGKYFASILCDVNIQELPKIDKKVGVDVGLKTFAVCSDGY
ECCCCCCCCCEEEEEEECCCCCCEEEHHEECCCHHHHCCHHHHHCCCCCHHHHEEECCCC
EEANPKHFRKAEKRLIKLQRDLVRKEYNSKNYHKNRIMIAKLHERIANQRMDFLQKFSTK
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LIRENQSIAIEDLRVSNMLKNHKLAKVISEASWSEFRRMLEYKAEWYGREIVIAPPDYAS
HHHCCCCEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCCCH
SQLCSECGYKNIEVKNLGLREWICPECGTHHQRDLNASINLEKLIA
HHHHHHCCCCCEEEECCCCHHHCCCCCCCCCCCCCCCCCCHHHHCC
>Mature Secondary Structure
MKILVLDMISITKKTGGRPKFKSKKNEIQSYTTKLVKAKGNVNIEIVGKGIKLPKLGLVK
CEEEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEE
IENSRNVDGNIKRVTVSRTQSGKYFASILCDVNIQELPKIDKKVGVDVGLKTFAVCSDGY
ECCCCCCCCCEEEEEEECCCCCCEEEHHEECCCHHHHCCHHHHHCCCCCHHHHEEECCCC
EEANPKHFRKAEKRLIKLQRDLVRKEYNSKNYHKNRIMIAKLHERIANQRMDFLQKFSTK
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LIRENQSIAIEDLRVSNMLKNHKLAKVISEASWSEFRRMLEYKAEWYGREIVIAPPDYAS
HHHCCCCEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCCCH
SQLCSECGYKNIEVKNLGLREWICPECGTHHQRDLNASINLEKLIA
HHHHHHCCCCCEEEECCCCHHHCCCCCCCCCCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]