| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18309649
Identifier: 18309649
GI number: 18309649
Start: 831468
End: 831821
Strand: Direct
Name: 18309649
Synonym: CPE0667
Alternate gene names: NA
Gene position: 831468-831821 (Clockwise)
Preceding gene: 18309648
Following gene: 18309650
Centisome position: 27.43
GC content: 31.64
Gene sequence:
>354_bases GTGATAAGAAAGAAAGCATATAAATTTAGAATATATCCAACTAAGAAACAAGCCGAGCTAATTAACAAGACTATTGGATG TTGTAGGTTTGTATTCAACTATTCTTTAGGTGTTCAAAAAACTAAAGATAATTATTGGAATATAGTTGAGGAGATGGTTC AACAAGGCTACTTCCAAGAGAATAATTGGAAAGGCGAGTTCTTTAATAAAGCCAATTCAATTAAAGATATAGCTAAATTA AAGAAAAGCTATGATTGGCTTAAAGAAGTAGATAGCATAGCACTACAGGCTTCTGTTGAAAATCTTGGTGCTGGATATGA TAAGTATTACAAAAAAAACAGGTGGCAGACCTAA
Upstream 100 bases:
>100_bases CTATGGAATCCAAGCTATTTTGTAGCTACTGTATCAGAGAATACAGAAGAACAAATTAGAAACTATATTCAAAATCAACA AGTAAAGTGAGGTGAGATAA
Downstream 100 bases:
>100_bases ATTTAAGTCTAAGAAAAATGAAATACAATCTTATACTACTAAATTAGTAAAAGCTAAAGGTAATGTAAATATTGAGATAG TAGGTAAAGGAATTAAACTA
Product: transposase
Products: NA
Alternate protein names: Transposase For Insertion Sequence Element; Amidase; Transposase-Like Protein B; ISCpe2 Transposase OrfB; Transposase OrfB Family; Transposase OrfB For Insertion Sequence Element
Number of amino acids: Translated: 117; Mature: 117
Protein sequence:
>117_residues MIRKKAYKFRIYPTKKQAELINKTIGCCRFVFNYSLGVQKTKDNYWNIVEEMVQQGYFQENNWKGEFFNKANSIKDIAKL KKSYDWLKEVDSIALQASVENLGAGYDKYYKKNRWQT
Sequences:
>Translated_117_residues MIRKKAYKFRIYPTKKQAELINKTIGCCRFVFNYSLGVQKTKDNYWNIVEEMVQQGYFQENNWKGEFFNKANSIKDIAKL KKSYDWLKEVDSIALQASVENLGAGYDKYYKKNRWQT >Mature_117_residues MIRKKAYKFRIYPTKKQAELINKTIGCCRFVFNYSLGVQKTKDNYWNIVEEMVQQGYFQENNWKGEFFNKANSIKDIAKL KKSYDWLKEVDSIALQASVENLGAGYDKYYKKNRWQT
Specific function: Unknown
COG id: COG0675
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13988; Mature: 13988
Theoretical pI: Translated: 10.06; Mature: 10.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRKKAYKFRIYPTKKQAELINKTIGCCRFVFNYSLGVQKTKDNYWNIVEEMVQQGYFQE CCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCC NNWKGEFFNKANSIKDIAKLKKSYDWLKEVDSIALQASVENLGAGYDKYYKKNRWQT CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC >Mature Secondary Structure MIRKKAYKFRIYPTKKQAELINKTIGCCRFVFNYSLGVQKTKDNYWNIVEEMVQQGYFQE CCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCC NNWKGEFFNKANSIKDIAKLKKSYDWLKEVDSIALQASVENLGAGYDKYYKKNRWQT CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA