| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is toxA [H]
Identifier: 18309606
GI number: 18309606
Start: 780389
End: 782812
Strand: Direct
Name: toxA [H]
Synonym: CPE0624
Alternate gene names: 18309606
Gene position: 780389-782812 (Clockwise)
Preceding gene: 18309605
Following gene: 18309607
Centisome position: 25.74
GC content: 29.46
Gene sequence:
>2424_bases TTGATTAAAAAGTTTATTCTTGCTACAGTTATTACTTTAAGTGTAACTTCAATTAATGTTCTAGCTTCAGAGAATGTAAA TGATAAGTCTGATGAAAGTAAGTCTTCTAGTTTAGTTGGGGAAACTTATGAAATTGTAAAAGAGCCAAATATGTTTTTTT CAATTCCAGGTGATAATGTAGAAAGCTATAAAGATGAAAATGGAATTGAGAGAGAAGAATTTAAAAAGGATAAAGAAGGT CAAGAATCTATAAACAGACTTGTTACAAAGACTAAGAGTAAGTATGAGATAGCATTAGCTCATGAAAATGGGAAATATAC TTTTTTAGATTCTGCAAACACAAAGGAAGAAGCAGAGAAAAAGGTTGAAAATGCAAGTGAAAAATATAATACTTTTGCAG CAATGCCTGTTGTTTTAAATGATAGTGGACAAGTAGCTTATTCAGAAAAATCAATGGGAAGATTAGTTAAATATAAAAAT GGAAGTCCAGCTGGATATGGAGAAATAACCAATATATATGCTAATCCTAATTTAACAAATGACTTTACATATATTAATCA TGGTTATGTAGATGATGTTCCAATAATTGAGGATAGAGGAAATGTTGCCAAAATAGAAGTTGGAGGATATGAAGGTTGGG TAAATAAAGATACTAGTTCTGGAAATTATGATTTAGTCATAGTACCATTAAACCAAGTAAAAAATCCAAGTTATTATATA GTTAGAGATGGAGAGTTAATCCATTATATAAGTAGTGATCTTACCAATTATTCTGAAGGTGGATATGAGGTTGTTATAGG ACCAGCACCTAATTTCTTAAATGAAAATGTAAAATATTATAGTTATGATAACAAATATTTTTATAAAGATTTAAGTACAT TAATAGGTGATTTACAAAATGATAATCATAATAATTCTGTAAATGCAAATAATCCTTTTTATCCATATTATATCCATTTA CCATTTAGAAGTAAAACAACATTTACTGCTGAAGAATTAAATAATTTTATTGCTAAAAAGACAAAATCATATAGTAAATT AAGAGGAACTGGACAAGCTTTTATAGATGCACAAAATAAATATGGAGCAAATGCTCTTTTACTTTTAGGACTAGCGGCTA ATGAATCAGCTTGGGGGACATCTCAAATAGCTCAACAAAAAAATAATTTGTTTGGAATAAATGCTATTGATTCAAGTCCA GGAGCATCAGCAAATTCATTTGAAACTGTTGAAGGCTGTATAAATGATTTTGCAAAATATTATATTTCTAGAGGATATTC AGATCCAGAAGATTGGAGATATTTTGGAGGATACCTTGGAAATAAGGGTAGTGGAGCTAATGTTAAATATGCTTCAGATC CATTCTGGGGAGAAAAAGCAGGACAAAATGCTTATATAGCTGATTACTGGGCAAGTGGAAAAGGAATAGCAGGTTTAAAA GATTATAATTACTATCAGCTAGGCATTTATACAGGGGCTAGTAGTGTTACAAATAAAGATAATGAAAAATTATATGATGT AGGTGGCTTATATACTGAAAGAGTAGAAAAAATAGGAGCTACAACAATTTTAACTAGCAAAGAAAAGATTAGCCACAATG GAAAAGACTGTTATGAAATAAATCCAGTTAGAACAACTCCTGTAATATCAAATGGATCACCAGTAGCATTCAAAGGTCCA TATGATTGGAATGATAAAGGTTTTGTAGATGCATCAAAAGTTAAGCTTATAAATGAAGGTAAGCATTCTGAAAATGTTAT AGGAAAATGGGAATTAAATGATGGCATATGGTACTATTATATAGACGGAAAATATGTTACTGGGTGGAAGAATATAGATA ATAACAAGTATTATTTTGATCAATCAGGTAAGATGCAAACAGGTTGGCTATGTATAGATAATATATGGTATCATTTTAGA GATAATGGAACAATAGACATAGGTTGGAGAGAAATAGATGGATATTGGTATTATTTTAATAATGATGGAGAAATGCAAAA GGGTTGGCAGACAATAGGTAAATATAAGTATTATTTCAATGATAATGGAGTAATGAATATTGGCTGGAGAAAAATAGATA ATATTTGGTACTATTTTAATATAAATGGAGAAATGCAAACAGGATGGTTATTTGAAAATAATATATGGTATCATTTTGAA ACTACAGGTTCAATGACTGTAGGATGGAAAAAAATAAATAATGATTGGTACTATTTTAATTCAAATGGAGAAATGCAAAC AGGATGGCAAAATATTGGTACTCCAAAATATCATTTTAGAGATAATGGTGTAATGGACATTGGATGGAGAGAAATAGATG GACAATGGCATTATTTTAATGAGAATGGAGAAATGCAAACAGGTTGGCAATATATAAATGGAAATAGTTATTATTTCGAT GAAAAAGGAATATGGAAACAGTAA
Upstream 100 bases:
>100_bases TTTCTTAATTTTACTAGTTATTAAAGATGATTGTTTATTAGAAATAATAAATAAATTTACTAAAAAATTAAAAAGATAAA AAATAAAAGGGGGAGTTTCA
Downstream 100 bases:
>100_bases TAAAAAGACTGATTAAATTCAGTCTTTTTATTATAGAATAAATTTCTAATATTGATAAATATAACGTAATAAGGTAATAT TTAAGTATAAGCAAGTTTAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 807; Mature: 807
Protein sequence:
>807_residues MIKKFILATVITLSVTSINVLASENVNDKSDESKSSSLVGETYEIVKEPNMFFSIPGDNVESYKDENGIEREEFKKDKEG QESINRLVTKTKSKYEIALAHENGKYTFLDSANTKEEAEKKVENASEKYNTFAAMPVVLNDSGQVAYSEKSMGRLVKYKN GSPAGYGEITNIYANPNLTNDFTYINHGYVDDVPIIEDRGNVAKIEVGGYEGWVNKDTSSGNYDLVIVPLNQVKNPSYYI VRDGELIHYISSDLTNYSEGGYEVVIGPAPNFLNENVKYYSYDNKYFYKDLSTLIGDLQNDNHNNSVNANNPFYPYYIHL PFRSKTTFTAEELNNFIAKKTKSYSKLRGTGQAFIDAQNKYGANALLLLGLAANESAWGTSQIAQQKNNLFGINAIDSSP GASANSFETVEGCINDFAKYYISRGYSDPEDWRYFGGYLGNKGSGANVKYASDPFWGEKAGQNAYIADYWASGKGIAGLK DYNYYQLGIYTGASSVTNKDNEKLYDVGGLYTERVEKIGATTILTSKEKISHNGKDCYEINPVRTTPVISNGSPVAFKGP YDWNDKGFVDASKVKLINEGKHSENVIGKWELNDGIWYYYIDGKYVTGWKNIDNNKYYFDQSGKMQTGWLCIDNIWYHFR DNGTIDIGWREIDGYWYYFNNDGEMQKGWQTIGKYKYYFNDNGVMNIGWRKIDNIWYYFNINGEMQTGWLFENNIWYHFE TTGSMTVGWKKINNDWYYFNSNGEMQTGWQNIGTPKYHFRDNGVMDIGWREIDGQWHYFNENGEMQTGWQYINGNSYYFD EKGIWKQ
Sequences:
>Translated_807_residues MIKKFILATVITLSVTSINVLASENVNDKSDESKSSSLVGETYEIVKEPNMFFSIPGDNVESYKDENGIEREEFKKDKEG QESINRLVTKTKSKYEIALAHENGKYTFLDSANTKEEAEKKVENASEKYNTFAAMPVVLNDSGQVAYSEKSMGRLVKYKN GSPAGYGEITNIYANPNLTNDFTYINHGYVDDVPIIEDRGNVAKIEVGGYEGWVNKDTSSGNYDLVIVPLNQVKNPSYYI VRDGELIHYISSDLTNYSEGGYEVVIGPAPNFLNENVKYYSYDNKYFYKDLSTLIGDLQNDNHNNSVNANNPFYPYYIHL PFRSKTTFTAEELNNFIAKKTKSYSKLRGTGQAFIDAQNKYGANALLLLGLAANESAWGTSQIAQQKNNLFGINAIDSSP GASANSFETVEGCINDFAKYYISRGYSDPEDWRYFGGYLGNKGSGANVKYASDPFWGEKAGQNAYIADYWASGKGIAGLK DYNYYQLGIYTGASSVTNKDNEKLYDVGGLYTERVEKIGATTILTSKEKISHNGKDCYEINPVRTTPVISNGSPVAFKGP YDWNDKGFVDASKVKLINEGKHSENVIGKWELNDGIWYYYIDGKYVTGWKNIDNNKYYFDQSGKMQTGWLCIDNIWYHFR DNGTIDIGWREIDGYWYYFNNDGEMQKGWQTIGKYKYYFNDNGVMNIGWRKIDNIWYYFNINGEMQTGWLFENNIWYHFE TTGSMTVGWKKINNDWYYFNSNGEMQTGWQNIGTPKYHFRDNGVMDIGWREIDGQWHYFNENGEMQTGWQYINGNSYYFD EKGIWKQ >Mature_807_residues MIKKFILATVITLSVTSINVLASENVNDKSDESKSSSLVGETYEIVKEPNMFFSIPGDNVESYKDENGIEREEFKKDKEG QESINRLVTKTKSKYEIALAHENGKYTFLDSANTKEEAEKKVENASEKYNTFAAMPVVLNDSGQVAYSEKSMGRLVKYKN GSPAGYGEITNIYANPNLTNDFTYINHGYVDDVPIIEDRGNVAKIEVGGYEGWVNKDTSSGNYDLVIVPLNQVKNPSYYI VRDGELIHYISSDLTNYSEGGYEVVIGPAPNFLNENVKYYSYDNKYFYKDLSTLIGDLQNDNHNNSVNANNPFYPYYIHL PFRSKTTFTAEELNNFIAKKTKSYSKLRGTGQAFIDAQNKYGANALLLLGLAANESAWGTSQIAQQKNNLFGINAIDSSP GASANSFETVEGCINDFAKYYISRGYSDPEDWRYFGGYLGNKGSGANVKYASDPFWGEKAGQNAYIADYWASGKGIAGLK DYNYYQLGIYTGASSVTNKDNEKLYDVGGLYTERVEKIGATTILTSKEKISHNGKDCYEINPVRTTPVISNGSPVAFKGP YDWNDKGFVDASKVKLINEGKHSENVIGKWELNDGIWYYYIDGKYVTGWKNIDNNKYYFDQSGKMQTGWLCIDNIWYHFR DNGTIDIGWREIDGYWYYFNNDGEMQKGWQTIGKYKYYFNDNGVMNIGWRKIDNIWYYFNINGEMQTGWLFENNIWYHFE TTGSMTVGWKKINNDWYYFNSNGEMQTGWQNIGTPKYHFRDNGVMDIGWREIDGQWHYFNENGEMQTGWQYINGNSYYFD EKGIWKQ
Specific function: Only after the enteral delivery of the enterotoxin A may the characteristic disease called pseudomembranous colitis be induced [H]
COG id: COG5263
COG function: function code R; FOG: Glucan-binding domain (YG repeat)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 32 cell wall-binding repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018337 - InterPro: IPR007577 - InterPro: IPR020974 [H]
Pfam domain/function: PF01473 CW_binding_1; PF04488 Gly_transf_sug; PF11713 Peptidase_C80 [H]
EC number: NA
Molecular weight: Translated: 92204; Mature: 92204
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKKFILATVITLSVTSINVLASENVNDKSDESKSSSLVGETYEIVKEPNMFFSIPGDNV CCHHHHHHHHHEEEEEEEEEEECCCCCCCCCCCHHHHHCCCHHHHHCCCCEEEECCCCCH ESYKDENGIEREEFKKDKEGQESINRLVTKTKSKYEIALAHENGKYTFLDSANTKEEAEK HHCCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECCCCHHHHHH KVENASEKYNTFAAMPVVLNDSGQVAYSEKSMGRLVKYKNGSPAGYGEITNIYANPNLTN HHHHHHHHHCEEEEEEEEECCCCCEEECCCCCCCEEEECCCCCCCCCCEEEEEECCCCCC DFTYINHGYVDDVPIIEDRGNVAKIEVGGYEGWVNKDTSSGNYDLVIVPLNQVKNPSYYI CEEEEECCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEHHHCCCCCEEE VRDGELIHYISSDLTNYSEGGYEVVIGPAPNFLNENVKYYSYDNKYFYKDLSTLIGDLQN EECCCEEEEEHHCCCCCCCCCEEEEECCCCCHHCCCCEEEEECCEEHHHHHHHHHHHHCC DNHNNSVNANNPFYPYYIHLPFRSKTTFTAEELNNFIAKKTKSYSKLRGTGQAFIDAQNK CCCCCCCCCCCCEEEEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC YGANALLLLGLAANESAWGTSQIAQQKNNLFGINAIDSSPGASANSFETVEGCINDFAKY CCCCEEEEEEEECCCCCCCHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH YISRGYSDPEDWRYFGGYLGNKGSGANVKYASDPFWGEKAGQNAYIADYWASGKGIAGLK HHHCCCCCHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCC DYNYYQLGIYTGASSVTNKDNEKLYDVGGLYTERVEKIGATTILTSKEKISHNGKDCYEI CCCEEEEEEEECCCCCCCCCCCEEEECCCHHHHHHHHCCCEEEEECHHHHCCCCCCEEEE NPVRTTPVISNGSPVAFKGPYDWNDKGFVDASKVKLINEGKHSENVIGKWELNDGIWYYY CCCCCCEEECCCCCEEEECCCCCCCCCCEEHHHEEEEECCCCCCCEEEEEEECCCEEEEE IDGKYVTGWKNIDNNKYYFDQSGKMQTGWLCIDNIWYHFRDNGTIDIGWREIDGYWYYFN ECCEEEECCCCCCCCEEEECCCCCEEECEEEEECEEEEEECCCEEEEEEEEECCEEEEEC NDGEMQKGWQTIGKYKYYFNDNGVMNIGWRKIDNIWYYFNINGEMQTGWLFENNIWYHFE CCCCHHHHHHHHCCEEEEECCCCEEEECEEEECCEEEEEEECCCEEEEEEEECCEEEEEE TTGSMTVGWKKINNDWYYFNSNGEMQTGWQNIGTPKYHFRDNGVMDIGWREIDGQWHYFN CCCCEEEEEEEECCCEEEECCCCCEECCHHHCCCCEEEECCCCEEEECEEEECCEEEEEC ENGEMQTGWQYINGNSYYFDEKGIWKQ CCCCEEECEEEECCCEEEECCCCCCCC >Mature Secondary Structure MIKKFILATVITLSVTSINVLASENVNDKSDESKSSSLVGETYEIVKEPNMFFSIPGDNV CCHHHHHHHHHEEEEEEEEEEECCCCCCCCCCCHHHHHCCCHHHHHCCCCEEEECCCCCH ESYKDENGIEREEFKKDKEGQESINRLVTKTKSKYEIALAHENGKYTFLDSANTKEEAEK HHCCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECCCCHHHHHH KVENASEKYNTFAAMPVVLNDSGQVAYSEKSMGRLVKYKNGSPAGYGEITNIYANPNLTN HHHHHHHHHCEEEEEEEEECCCCCEEECCCCCCCEEEECCCCCCCCCCEEEEEECCCCCC DFTYINHGYVDDVPIIEDRGNVAKIEVGGYEGWVNKDTSSGNYDLVIVPLNQVKNPSYYI CEEEEECCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEHHHCCCCCEEE VRDGELIHYISSDLTNYSEGGYEVVIGPAPNFLNENVKYYSYDNKYFYKDLSTLIGDLQN EECCCEEEEEHHCCCCCCCCCEEEEECCCCCHHCCCCEEEEECCEEHHHHHHHHHHHHCC DNHNNSVNANNPFYPYYIHLPFRSKTTFTAEELNNFIAKKTKSYSKLRGTGQAFIDAQNK CCCCCCCCCCCCEEEEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC YGANALLLLGLAANESAWGTSQIAQQKNNLFGINAIDSSPGASANSFETVEGCINDFAKY CCCCEEEEEEEECCCCCCCHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH YISRGYSDPEDWRYFGGYLGNKGSGANVKYASDPFWGEKAGQNAYIADYWASGKGIAGLK HHHCCCCCHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCC DYNYYQLGIYTGASSVTNKDNEKLYDVGGLYTERVEKIGATTILTSKEKISHNGKDCYEI CCCEEEEEEEECCCCCCCCCCCEEEECCCHHHHHHHHCCCEEEEECHHHHCCCCCCEEEE NPVRTTPVISNGSPVAFKGPYDWNDKGFVDASKVKLINEGKHSENVIGKWELNDGIWYYY CCCCCCEEECCCCCEEEECCCCCCCCCCEEHHHEEEEECCCCCCCEEEEEEECCCEEEEE IDGKYVTGWKNIDNNKYYFDQSGKMQTGWLCIDNIWYHFRDNGTIDIGWREIDGYWYYFN ECCEEEECCCCCCCCEEEECCCCCEEECEEEEECEEEEEECCCEEEEEEEEECCEEEEEC NDGEMQKGWQTIGKYKYYFNDNGVMNIGWRKIDNIWYYFNINGEMQTGWLFENNIWYHFE CCCCHHHHHHHHCCEEEEECCCCEEEECEEEECCEEEEEEECCCEEEEEEEECCEEEEEE TTGSMTVGWKKINNDWYYFNSNGEMQTGWQNIGTPKYHFRDNGVMDIGWREIDGQWHYFN CCCCEEEEEEEECCCEEEECCCCCEECCHHHCCCCEEEECCCCEEEECEEEECCEEEEEC ENGEMQTGWQYINGNSYYFDEKGIWKQ CCCCEEECEEEECCCEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2109310; 2105276 [H]