| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is bcn [H]
Identifier: 18309607
GI number: 18309607
Start: 782941
End: 784593
Strand: Direct
Name: bcn [H]
Synonym: CPE0625
Alternate gene names: 18309607
Gene position: 782941-784593 (Clockwise)
Preceding gene: 18309606
Following gene: 18309608
Centisome position: 25.83
GC content: 30.85
Gene sequence:
>1653_bases GTGAAGAGAAAAAGTATTGCATTAGTTCTTTCTTTAGGACTGTTAGGTTCTGTTACTTTAGGTAGCATTGAAACAGTTTA TGCTGAAGGAAATAAGAACACAACTAATATTAGTGAAGTAAAAGTTGACAATAAGGTAGAATTAAGTGACAAGAAAAACA AAGAGATAAAAAATGGATGGGAAATTATAAATGATAAGTGGTATTATCATGAAAGTGATGGAAGTTTAGCTACTGGGTTT AAAAAAATAAATGATGAATGGTATCGTTTTGATAATAATGGAGAAATGCAAGTTGGATGGCAATATATAAATGATATATG GTACCATTTTAGAGATAATGGCCCTATGGATACTGGTTGGAGAAAGATTAATAATGATTGGTATTATTTTAATAATGATG GAGAAATGCAAACAGGATGGCAGTCTATAGGGAATAAAAGATATCATTTCAGAGATAATGGAGTAATGGACACTGGTTGG AGATCATTAGGAAGTGATTGGTATCTATTAAACTCAGATGGAGAAATGCAGACAGGTTGGCAACATATAAATAATATATG GTATCATCTTGAAGATGACGGTAAAATGAATACTGGATGGCAAGATATAAATGGAGACAAATATTATTTTAATAATAGCG GCGAAATGCAAACAGGTTGGCAATATATAAATGATATATGGTACCATTTAAGAGAAAATGGACCTGCAGATACTGGTTGG AGAAAAATAAATAATGACTGGTATTACTTTGATAATATAGGTAAAATGCAGACAAGCTGGCAAGATATTGATAACTCAAC ATATTATTTCAATGATAATGGAGTTATGAGTATTGGATGGAGAACTATAGAAAGTGAATGGTATTATTTTAATAATAGTG GAGCAAAAGAAAGCAACAAAGTTATAGATGATTGGTATTTAGATAAAAATGGAGTAGGAAATCAGATTGTAACTGAAGGT GTATATGGAAAGAGTGGAAATGGCAGAGATTTAGAATATTATAGAATAGGACATGGTAAAAAGGTATTATTCTCAGTGTT TGGAGTACATGGATATGAAGATGCTTGGAGTGGTGATTCACAAGAACTTAAAATAATAGCTGAAAAGTCAGTAAATAGAT TAAGAAGTGAATATAATACTAAAGGAATAGATTTAAGTGAATGGAGTGTATATATTATACCTTCAGCTAATCCAGATGGA AGAATTGATGGATGGACAAACAATGGACCAGGTAGAACTACAGTAACAACTAAGAATGATATAAATAGATCATTCCCTAC AGGATTTTCTCCTTTTTATAGTGCTAGAAACTATACAGGACCAACAGCATTAGGTTCTCCAGAGGCAAAGGCTTTATATG GTTTCATAAATAAAACTATGGAAGGAGCAACTGAAAAAGTTCTTTTAGATGTACATGGATGGGAAAACAAAACAATAGGT AATCCTAGCATTGCTAGATATTTTGATAATGAATTTGGCTTTAGAAATATAAATAAATATCCAGGTGGATTTGTAATAAC TTATGGAAATGCTATAGGAGCTAAATCAGTTTTAGTAGAATTTCCAGTTCCTTATTCACATCAAGATATATTAAGAAGAG ATTTTTCAGGTAAATTTGCTAATGGATTAGTAAATATTCTTTTAAATAACTAA
Upstream 100 bases:
>100_bases TATTATAGAATAAATTTCTAATATTGATAAATATAACGTAATAAGGTAATATTTAAGTATAAGCAAGTTTATACGCTAAT TCAAAAAAAGAGGTGGACAA
Downstream 100 bases:
>100_bases AAATAAGTATAACTAAACTATATGATAGAATTTTAAAAATAATTTTATCATATAGTTTTTTTATGTTGTTTAAATTTTAA TTTATACATAATTTAGATAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 550; Mature: 550
Protein sequence:
>550_residues MKRKSIALVLSLGLLGSVTLGSIETVYAEGNKNTTNISEVKVDNKVELSDKKNKEIKNGWEIINDKWYYHESDGSLATGF KKINDEWYRFDNNGEMQVGWQYINDIWYHFRDNGPMDTGWRKINNDWYYFNNDGEMQTGWQSIGNKRYHFRDNGVMDTGW RSLGSDWYLLNSDGEMQTGWQHINNIWYHLEDDGKMNTGWQDINGDKYYFNNSGEMQTGWQYINDIWYHLRENGPADTGW RKINNDWYYFDNIGKMQTSWQDIDNSTYYFNDNGVMSIGWRTIESEWYYFNNSGAKESNKVIDDWYLDKNGVGNQIVTEG VYGKSGNGRDLEYYRIGHGKKVLFSVFGVHGYEDAWSGDSQELKIIAEKSVNRLRSEYNTKGIDLSEWSVYIIPSANPDG RIDGWTNNGPGRTTVTTKNDINRSFPTGFSPFYSARNYTGPTALGSPEAKALYGFINKTMEGATEKVLLDVHGWENKTIG NPSIARYFDNEFGFRNINKYPGGFVITYGNAIGAKSVLVEFPVPYSHQDILRRDFSGKFANGLVNILLNN
Sequences:
>Translated_550_residues MKRKSIALVLSLGLLGSVTLGSIETVYAEGNKNTTNISEVKVDNKVELSDKKNKEIKNGWEIINDKWYYHESDGSLATGF KKINDEWYRFDNNGEMQVGWQYINDIWYHFRDNGPMDTGWRKINNDWYYFNNDGEMQTGWQSIGNKRYHFRDNGVMDTGW RSLGSDWYLLNSDGEMQTGWQHINNIWYHLEDDGKMNTGWQDINGDKYYFNNSGEMQTGWQYINDIWYHLRENGPADTGW RKINNDWYYFDNIGKMQTSWQDIDNSTYYFNDNGVMSIGWRTIESEWYYFNNSGAKESNKVIDDWYLDKNGVGNQIVTEG VYGKSGNGRDLEYYRIGHGKKVLFSVFGVHGYEDAWSGDSQELKIIAEKSVNRLRSEYNTKGIDLSEWSVYIIPSANPDG RIDGWTNNGPGRTTVTTKNDINRSFPTGFSPFYSARNYTGPTALGSPEAKALYGFINKTMEGATEKVLLDVHGWENKTIG NPSIARYFDNEFGFRNINKYPGGFVITYGNAIGAKSVLVEFPVPYSHQDILRRDFSGKFANGLVNILLNN >Mature_550_residues MKRKSIALVLSLGLLGSVTLGSIETVYAEGNKNTTNISEVKVDNKVELSDKKNKEIKNGWEIINDKWYYHESDGSLATGF KKINDEWYRFDNNGEMQVGWQYINDIWYHFRDNGPMDTGWRKINNDWYYFNNDGEMQTGWQSIGNKRYHFRDNGVMDTGW RSLGSDWYLLNSDGEMQTGWQHINNIWYHLEDDGKMNTGWQDINGDKYYFNNSGEMQTGWQYINDIWYHLRENGPADTGW RKINNDWYYFDNIGKMQTSWQDIDNSTYYFNDNGVMSIGWRTIESEWYYFNNSGAKESNKVIDDWYLDKNGVGNQIVTEG VYGKSGNGRDLEYYRIGHGKKVLFSVFGVHGYEDAWSGDSQELKIIAEKSVNRLRSEYNTKGIDLSEWSVYIIPSANPDG RIDGWTNNGPGRTTVTTKNDINRSFPTGFSPFYSARNYTGPTALGSPEAKALYGFINKTMEGATEKVLLDVHGWENKTIG NPSIARYFDNEFGFRNINKYPGGFVITYGNAIGAKSVLVEFPVPYSHQDILRRDFSGKFANGLVNILLNN
Specific function: May function as an ionophore [H]
COG id: COG5263
COG function: function code R; FOG: Glucan-binding domain (YG repeat)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000834 - InterPro: IPR003646 - InterPro: IPR013247 [H]
Pfam domain/function: PF00246 Peptidase_M14; PF08239 SH3_3 [H]
EC number: NA
Molecular weight: Translated: 63368; Mature: 63368
Theoretical pI: Translated: 5.27; Mature: 5.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRKSIALVLSLGLLGSVTLGSIETVYAEGNKNTTNISEVKVDNKVELSDKKNKEIKNGW CCCCCEEEEEEHHHHCCEEECCEEEEEECCCCCCCCEEEEEECCEEECCCCCCCHHHCCC EIINDKWYYHESDGSLATGFKKINDEWYRFDNNGEMQVGWQYINDIWYHFRDNGPMDTGW EEECCEEEEECCCCCHHHHHHHHCCCCEEECCCCCEEEHHHHHHHHHEEECCCCCCCCCC RKINNDWYYFNNDGEMQTGWQSIGNKRYHFRDNGVMDTGWRSLGSDWYLLNSDGEMQTGW EEECCCEEEECCCCCCCHHHHHHCCCEEEECCCCCCCCCHHHCCCCEEEECCCCCCHHHH QHINNIWYHLEDDGKMNTGWQDINGDKYYFNNSGEMQTGWQYINDIWYHLRENGPADTGW HHHCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCC RKINNDWYYFDNIGKMQTSWQDIDNSTYYFNDNGVMSIGWRTIESEWYYFNNSGAKESNK EEECCCEEEECCCCCCCCCHHCCCCCEEEECCCCEEEEEEEEEECEEEEEECCCCCCCCC VIDDWYLDKNGVGNQIVTEGVYGKSGNGRDLEYYRIGHGKKVLFSVFGVHGYEDAWSGDS CEEEEEECCCCCCCCEEECCCCCCCCCCCCEEEEEECCCCEEEEHHHCCCCCCCCCCCCC QELKIIAEKSVNRLRSEYNTKGIDLSEWSVYIIPSANPDGRIDGWTNNGPGRTTVTTKND CCEEEEHHHHHHHHHHHHCCCCCEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCC INRSFPTGFSPFYSARNYTGPTALGSPEAKALYGFINKTMEGATEKVLLDVHGWENKTIG CCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC NPSIARYFDNEFGFRNINKYPGGFVITYGNAIGAKSVLVEFPVPYSHQDILRRDFSGKFA CCHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCHHHHHHHHCCCHHH NGLVNILLNN CCEEEEEECC >Mature Secondary Structure MKRKSIALVLSLGLLGSVTLGSIETVYAEGNKNTTNISEVKVDNKVELSDKKNKEIKNGW CCCCCEEEEEEHHHHCCEEECCEEEEEECCCCCCCCEEEEEECCEEECCCCCCCHHHCCC EIINDKWYYHESDGSLATGFKKINDEWYRFDNNGEMQVGWQYINDIWYHFRDNGPMDTGW EEECCEEEEECCCCCHHHHHHHHCCCCEEECCCCCEEEHHHHHHHHHEEECCCCCCCCCC RKINNDWYYFNNDGEMQTGWQSIGNKRYHFRDNGVMDTGWRSLGSDWYLLNSDGEMQTGW EEECCCEEEECCCCCCCHHHHHHCCCEEEECCCCCCCCCHHHCCCCEEEECCCCCCHHHH QHINNIWYHLEDDGKMNTGWQDINGDKYYFNNSGEMQTGWQYINDIWYHLRENGPADTGW HHHCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCC RKINNDWYYFDNIGKMQTSWQDIDNSTYYFNDNGVMSIGWRTIESEWYYFNNSGAKESNK EEECCCEEEECCCCCCCCCHHCCCCCEEEECCCCEEEEEEEEEECEEEEEECCCCCCCCC VIDDWYLDKNGVGNQIVTEGVYGKSGNGRDLEYYRIGHGKKVLFSVFGVHGYEDAWSGDS CEEEEEECCCCCCCCEEECCCCCCCCCCCCEEEEEECCCCEEEEHHHCCCCCCCCCCCCC QELKIIAEKSVNRLRSEYNTKGIDLSEWSVYIIPSANPDGRIDGWTNNGPGRTTVTTKND CCEEEEHHHHHHHHHHHHCCCCCEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCC INRSFPTGFSPFYSARNYTGPTALGSPEAKALYGFINKTMEGATEKVLLDVHGWENKTIG CCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC NPSIARYFDNEFGFRNINKYPGGFVITYGNAIGAKSVLVEFPVPYSHQDILRRDFSGKFA CCHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCHHHHHHHHCCCHHH NGLVNILLNN CCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2901768; 2877971; 2460717 [H]