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The map label for this gene is alc [H]

Identifier: 17547991

GI number: 17547991

Start: 3524919

End: 3525929

Strand: Reverse

Name: alc [H]

Synonym: RSc3274

Alternate gene names: 17547991

Gene position: 3525929-3524919 (Counterclockwise)

Preceding gene: 17547995

Following gene: 17547990

Centisome position: 94.87

GC content: 68.45

Gene sequence:

>1011_bases
ATGGCGATGCCTACGCTCGATCCGAACGCCCCCGACTTCACGCGCCGTTATCCGAACCTGGCGGACCCCCGCCTGGGCGC
CGTGGCCACGTTCGCGACCGATGAATTCTTCGCGCCCAAGGACCGCATGCTCAATCCCGAGCCGGCCGTCTTCATTCCCG
GCAAGTACGACGACCACGGCAAGTGGATGGACGGCTGGGAAACGCGTCGCCGCCGCAACGGCGGCTATGACCACTGCATC
GTCAAGCTGGCCCGGCCGGGCGTGGTCAAGGGCGTGGACATCGATACCAGCCACTTCACCGGCAACTTCCCGCCGGCCGC
GTCCATCGACGCCGCCTACCTGCCGCACGGCGAGCCGACCGACGCCACGCAGTGGACCGAGATCGTTCCGTCCACCACCC
TGCAGGGCAACAGCCACCACTATCTGGACGTGTTCGGCACCCACGCCTACACCCACCTGCGCGTGAACATCTACCCGGAC
GGCGGCATCGCGCGCCTGCGCGTGTATGGCCAACCGCAGGTCGACTGGAAGGGCGCGGACCGCGCCACGCTGTTCGACCT
GGCCGCGATGGAGAACGGCGCCTACGTGGTCGAGGTCAACAACCAGCACTTCGGGCTGGCCTCCAGCCTGCTGATGCCGG
GCCGCGGCATCAACATGGGCGACGGCTGGGAAACCCGCCGCCGCCGCGAGCCGGGCAACGACTGGTGCATCATCGCGCTG
GCGCACCCGGGCCGCATCCGCAAGATCGAAGTCGACACCGCCCACTTCAAGGGCAACTTCGCCGACCGCGTCTCCCTCCA
GGCCGCGCGCGTGACCGGCGGCACCGACGCCACGCTCAAGACGCAGGCCATGTTCTGGCAGACACTGCTGCCCGAGCAGA
AGCTGCAGATGGACCACCAGCACTACTACGAGGCCGAGCTCGCCGACCTGGGCCCCGTCACCCACGTGCGCTTCAACATG
TTCCCGGACGGCGGCGTCTCGCGCCTGCGCCTGTGGGGAGCGCTCGAATGA

Upstream 100 bases:

>100_bases
CGCCTCCATAAAATGCTGCACACCGGCCCGCCCGTCGCACGCTTGTCCGACGCGGCCCGCCCTATAACATCCACGAGACC
CATACCAAGGAGTGCCTTCC

Downstream 100 bases:

>100_bases
GCCGCGACACCGCCGCCGCCGAGGCCCGGACCGCGCTCGCGATCGAGCCGCTCACGCGCGAAGCCTTCGCGCCGTTCGGC
GATGTGATCGAACTGGAGGG

Product: allantoicase

Products: NA

Alternate protein names: Allantoate amidinohydrolase [H]

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MAMPTLDPNAPDFTRRYPNLADPRLGAVATFATDEFFAPKDRMLNPEPAVFIPGKYDDHGKWMDGWETRRRRNGGYDHCI
VKLARPGVVKGVDIDTSHFTGNFPPAASIDAAYLPHGEPTDATQWTEIVPSTTLQGNSHHYLDVFGTHAYTHLRVNIYPD
GGIARLRVYGQPQVDWKGADRATLFDLAAMENGAYVVEVNNQHFGLASSLLMPGRGINMGDGWETRRRREPGNDWCIIAL
AHPGRIRKIEVDTAHFKGNFADRVSLQAARVTGGTDATLKTQAMFWQTLLPEQKLQMDHQHYYEAELADLGPVTHVRFNM
FPDGGVSRLRLWGALE

Sequences:

>Translated_336_residues
MAMPTLDPNAPDFTRRYPNLADPRLGAVATFATDEFFAPKDRMLNPEPAVFIPGKYDDHGKWMDGWETRRRRNGGYDHCI
VKLARPGVVKGVDIDTSHFTGNFPPAASIDAAYLPHGEPTDATQWTEIVPSTTLQGNSHHYLDVFGTHAYTHLRVNIYPD
GGIARLRVYGQPQVDWKGADRATLFDLAAMENGAYVVEVNNQHFGLASSLLMPGRGINMGDGWETRRRREPGNDWCIIAL
AHPGRIRKIEVDTAHFKGNFADRVSLQAARVTGGTDATLKTQAMFWQTLLPEQKLQMDHQHYYEAELADLGPVTHVRFNM
FPDGGVSRLRLWGALE
>Mature_335_residues
AMPTLDPNAPDFTRRYPNLADPRLGAVATFATDEFFAPKDRMLNPEPAVFIPGKYDDHGKWMDGWETRRRRNGGYDHCIV
KLARPGVVKGVDIDTSHFTGNFPPAASIDAAYLPHGEPTDATQWTEIVPSTTLQGNSHHYLDVFGTHAYTHLRVNIYPDG
GIARLRVYGQPQVDWKGADRATLFDLAAMENGAYVVEVNNQHFGLASSLLMPGRGINMGDGWETRRRREPGNDWCIIALA
HPGRIRKIEVDTAHFKGNFADRVSLQAARVTGGTDATLKTQAMFWQTLLPEQKLQMDHQHYYEAELADLGPVTHVRFNMF
PDGGVSRLRLWGALE

Specific function: Unknown

COG id: COG4266

COG function: function code F; Allantoicase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the allantoicase family [H]

Homologues:

Organism=Homo sapiens, GI144953901, Length=366, Percent_Identity=36.6120218579235, Blast_Score=233, Evalue=1e-61,
Organism=Saccharomyces cerevisiae, GI6322220, Length=329, Percent_Identity=37.0820668693009, Blast_Score=204, Evalue=2e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005164
- InterPro:   IPR015908
- InterPro:   IPR008979 [H]

Pfam domain/function: PF03561 Allantoicase [H]

EC number: =3.5.3.4 [H]

Molecular weight: Translated: 37595; Mature: 37464

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMPTLDPNAPDFTRRYPNLADPRLGAVATFATDEFFAPKDRMLNPEPAVFIPGKYDDHG
CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHCCCCCCCEEECCCCCCCC
KWMDGWETRRRRNGGYDHCIVKLARPGVVKGVDIDTSHFTGNFPPAASIDAAYLPHGEPT
CCCCCHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCC
DATQWTEIVPSTTLQGNSHHYLDVFGTHAYTHLRVNIYPDGGIARLRVYGQPQVDWKGAD
CCCHHHHHCCCCEECCCCCEEEEEECCCEEEEEEEEEECCCCEEEEEEECCCCCCCCCCC
RATLFDLAAMENGAYVVEVNNQHFGLASSLLMPGRGINMGDGWETRRRREPGNDWCIIAL
CEEEEEEEEECCCEEEEEECCCCCCCHHHHHCCCCCCCCCCCCHHHHCCCCCCCEEEEEE
AHPGRIRKIEVDTAHFKGNFADRVSLQAARVTGGTDATLKTQAMFWQTLLPEQKLQMDHQ
ECCCCEEEEEEECCEECCCCCHHEEEEEEEECCCCCCEEEHHHHHHHHHCCHHHHHCCHH
HYYEAELADLGPVTHVRFNMFPDGGVSRLRLWGALE
HHHHHHHHHCCCEEEEEEEECCCCCCCEEEEEECCC
>Mature Secondary Structure 
AMPTLDPNAPDFTRRYPNLADPRLGAVATFATDEFFAPKDRMLNPEPAVFIPGKYDDHG
CCCCCCCCCCHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHCCCCCCCEEECCCCCCCC
KWMDGWETRRRRNGGYDHCIVKLARPGVVKGVDIDTSHFTGNFPPAASIDAAYLPHGEPT
CCCCCHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCC
DATQWTEIVPSTTLQGNSHHYLDVFGTHAYTHLRVNIYPDGGIARLRVYGQPQVDWKGAD
CCCHHHHHCCCCEECCCCCEEEEEECCCEEEEEEEEEECCCCEEEEEEECCCCCCCCCCC
RATLFDLAAMENGAYVVEVNNQHFGLASSLLMPGRGINMGDGWETRRRREPGNDWCIIAL
CEEEEEEEEECCCEEEEEECCCCCCCHHHHHCCCCCCCCCCCCHHHHCCCCCCCEEEEEE
AHPGRIRKIEVDTAHFKGNFADRVSLQAARVTGGTDATLKTQAMFWQTLLPEQKLQMDHQ
ECCCCEEEEEEECCEECCCCCHHEEEEEEEECCCCCCEEEHHHHHHHHHCCHHHHHCCHH
HYYEAELADLGPVTHVRFNMFPDGGVSRLRLWGALE
HHHHHHHHHCCCEEEEEEEECCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA