| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is maeB2 [H]
Identifier: 17547486
GI number: 17547486
Start: 2977669
End: 2980014
Strand: Reverse
Name: maeB2 [H]
Synonym: RSc2767
Alternate gene names: 17547486
Gene position: 2980014-2977669 (Counterclockwise)
Preceding gene: 17547490
Following gene: 17547485
Centisome position: 80.19
GC content: 65.9
Gene sequence:
>2346_bases ATGACCACGGTGGATACCCAGCCTCAACAGCCCGCCCGCACGGACGAAGAACTCAAGGCGCAACAACGCGCCGCCTTGCG CAAGGCCGCGCTGGAGTACCACGAGTTTCCGACCCCGGGCAAGATTTCCGTGACGCCGACCAAGCCGCTGTCCAACCAGC GCGACCTGGCCCTGGCGTACTCCCCCGGCGTCGCCGCGGCCTGCGAAGAGATCGTCGCCGACGTCTCCAACTCCTTCCGC TACACCGCCCGCGGCAACCTGGTCGCCGTGGTGACCAACGGCACCGCCGTGCTCGGCCTGGGCGATATCGGCCCCGAAGC CGCCAAGCCGGTCATGGAAGGCAAGGCGGGCCTGTTCAAGAAGTTTGCCGGGATCGATGTGTTTGACATCGAGATCAACG AAAAAGACCCGCAGAAGCTGGTCGATATCGTCGCTTCGCTGGAGCCGACCTTCGGCGGCATCAACCTGGAAGACATCAAG GCGCCGGAGTGCTTCTTCGTCGAGCGCGAGCTGCGCAAGCGCATGAAGATTCCCGTCTTCCACGATGACCAGCACGGCAC CGCCATCGTGGTGGGCGCAGGCATCACCAACGCGCTGAAGGTGGTCGGCAAGGACATCAAGCAGGTCAAGCTGGTGGCCT CGGGCGCCGGCGCGGCCGCGCTGGCCTGCCTGGACCTGCTGGTCGACCTGGGCCTGCCGCGCGAGAACATCTGGGTGACG GACCTGGCCGGCGTGGTCTACGAGGGCCGTACCGAGCTGATGGACCCGGACAAGGCCGTCTTCGCGCAAAAAACCGACAA GCGCACGCTGGCCGAGGTCATCGACGGCGCCGACATCTTCCTGGGCCTGTCCGCCGCCGGCGTGCTCAAGCAGGACATGG TCAAGCGCATGGCCGACCGGCCGATCATCTTCGCGTTGGCCAACCCGAACCCGGAAATCATGCCGGAGCTGGCCAAGGAA GTGCGCCCGGACGTCATCATGGGCACCGGCCGCACCGATTACCCGAACCAGGTCAACAACGTCCTGTGCTTCCCGTTCAT CTTCCGCGGCGCGCTGGACGTGGGCGCGACCACCATCACGCGCGAGATGGAAGTCGCCGCCGTGCACGCCGTGGCCGAGC TGGCCCGCCAGGAGCAGAGCGACATCGTTGCCACGGCGTACGGCATCCAGGACCTGTCGTTCGGACCGGAATACCTGATT CCGAAGCCCTTCGATCCGCGCCTGATCGTGAAGATCGCGCCGGCGGTGGCGCAGGCCGCCATGGACTCCGGCGTGGCGCA GCGCCCGATCGAGGACATGGACGCCTATCGCCAGCACCTGCAGCAGTTCGTCTACCACTCGGGCACGCTGATGAAGCCGA TCTTCTCGACGGCCAAGAAGGTGCCGATGGAGCACAAGCGCATCGTCTTCGCCGAGGGCGAAGAGGAGCGCGTGCTGCGC GCCGTGCAGGTCGTCGTCGATGAGAAGCTGGCCAACCCGATCCTGATCGGCCGCCCGGGCGTGATCGCCCATCGCATCGA GCGCTTCGGCCTGCGCCTGCGCGAGGGCGTCGACTTCACCATCGTCAACCCCGAGCACGACCAGCGGTTCCGCGAGTACT GGGAGACCTACTACAAGCTGATGGCGCGCAAGGGCGTCACGCCGCAGTACGCCAAGCTAGAGGTGCGCCGCCGCTCCACG CTGATCGGCGCCGTGATGATCCACAAGGGCGAGGCCGACGGCATGATCTGCGGTACGGTCAGCAACACCGCCGCCCATCT GCGCTATATCGACCAGGTCATCGGCGGCACCAACTGCGTGTACGCGGCGATGAACGGCCTGGTGCTGCCGGGCCGCCAGA TCTTCCTGACCGACACGCACGTCAACATCGATCCGAGCGCCGAGCAACTGGCCGAGATCACCATCATGGCCGCTGAAGAG CTGTGCCGTTTCGGCATCAAGCCGAAGGTGGCGCTGGTCTCGCACTCGAATTTCGGCTCGTCCGAGGCGCCTTCTGCCGC CAAGATGCGTGAAACCCTCGCCATCCTGCGTGAACGTGCCCCGCAACTGGAAGTGGACGGTGAAATGCACGGCGATGCCG CGCTCGACCAGAAGCTGCGCGACTCGCTGGTGCCGGATTCCACGCTGACCGGCGAAGCCAACCTGCTGGTGATGCCGAAC ATCGACGCCGCCAACATCGCCTACAACCTGCTGAAGACGGCGGCCGGCAACAACATCGCCATCGGCCCGATCCTGCTGGG TGCCAAGCGTCCGGTGCACATCCTGACGCCGTCGGCCACGGTGCGCCGCATTCTGAACATGACGGCACTGACTGTCGTGG ACGCCGCAGCACAGGCGCAACGCTGA
Upstream 100 bases:
>100_bases AGGCGGACCGCAATCCCGTGATCCCGTTGTGTGGTGATTCGGTGGCCCGCCGGATGTGACGGTCGACCCGTGTCGACCAC CCGATGACGAGAGACACCTC
Downstream 100 bases:
>100_bases AGCAGGGCGCCATGAGGAGGGGAGCGCACGATGCTGCGCTCCCTTTTTTTTGCCTGGAAGGTTTGCGTGCGCTCACATCT TTGCAGGCTTAATCCCTGAT
Product: malic enzyme
Products: NA
Alternate protein names: NADP-ME [H]
Number of amino acids: Translated: 781; Mature: 780
Protein sequence:
>781_residues MTTVDTQPQQPARTDEELKAQQRAALRKAALEYHEFPTPGKISVTPTKPLSNQRDLALAYSPGVAAACEEIVADVSNSFR YTARGNLVAVVTNGTAVLGLGDIGPEAAKPVMEGKAGLFKKFAGIDVFDIEINEKDPQKLVDIVASLEPTFGGINLEDIK APECFFVERELRKRMKIPVFHDDQHGTAIVVGAGITNALKVVGKDIKQVKLVASGAGAAALACLDLLVDLGLPRENIWVT DLAGVVYEGRTELMDPDKAVFAQKTDKRTLAEVIDGADIFLGLSAAGVLKQDMVKRMADRPIIFALANPNPEIMPELAKE VRPDVIMGTGRTDYPNQVNNVLCFPFIFRGALDVGATTITREMEVAAVHAVAELARQEQSDIVATAYGIQDLSFGPEYLI PKPFDPRLIVKIAPAVAQAAMDSGVAQRPIEDMDAYRQHLQQFVYHSGTLMKPIFSTAKKVPMEHKRIVFAEGEEERVLR AVQVVVDEKLANPILIGRPGVIAHRIERFGLRLREGVDFTIVNPEHDQRFREYWETYYKLMARKGVTPQYAKLEVRRRST LIGAVMIHKGEADGMICGTVSNTAAHLRYIDQVIGGTNCVYAAMNGLVLPGRQIFLTDTHVNIDPSAEQLAEITIMAAEE LCRFGIKPKVALVSHSNFGSSEAPSAAKMRETLAILRERAPQLEVDGEMHGDAALDQKLRDSLVPDSTLTGEANLLVMPN IDAANIAYNLLKTAAGNNIAIGPILLGAKRPVHILTPSATVRRILNMTALTVVDAAAQAQR
Sequences:
>Translated_781_residues MTTVDTQPQQPARTDEELKAQQRAALRKAALEYHEFPTPGKISVTPTKPLSNQRDLALAYSPGVAAACEEIVADVSNSFR YTARGNLVAVVTNGTAVLGLGDIGPEAAKPVMEGKAGLFKKFAGIDVFDIEINEKDPQKLVDIVASLEPTFGGINLEDIK APECFFVERELRKRMKIPVFHDDQHGTAIVVGAGITNALKVVGKDIKQVKLVASGAGAAALACLDLLVDLGLPRENIWVT DLAGVVYEGRTELMDPDKAVFAQKTDKRTLAEVIDGADIFLGLSAAGVLKQDMVKRMADRPIIFALANPNPEIMPELAKE VRPDVIMGTGRTDYPNQVNNVLCFPFIFRGALDVGATTITREMEVAAVHAVAELARQEQSDIVATAYGIQDLSFGPEYLI PKPFDPRLIVKIAPAVAQAAMDSGVAQRPIEDMDAYRQHLQQFVYHSGTLMKPIFSTAKKVPMEHKRIVFAEGEEERVLR AVQVVVDEKLANPILIGRPGVIAHRIERFGLRLREGVDFTIVNPEHDQRFREYWETYYKLMARKGVTPQYAKLEVRRRST LIGAVMIHKGEADGMICGTVSNTAAHLRYIDQVIGGTNCVYAAMNGLVLPGRQIFLTDTHVNIDPSAEQLAEITIMAAEE LCRFGIKPKVALVSHSNFGSSEAPSAAKMRETLAILRERAPQLEVDGEMHGDAALDQKLRDSLVPDSTLTGEANLLVMPN IDAANIAYNLLKTAAGNNIAIGPILLGAKRPVHILTPSATVRRILNMTALTVVDAAAQAQR >Mature_780_residues TTVDTQPQQPARTDEELKAQQRAALRKAALEYHEFPTPGKISVTPTKPLSNQRDLALAYSPGVAAACEEIVADVSNSFRY TARGNLVAVVTNGTAVLGLGDIGPEAAKPVMEGKAGLFKKFAGIDVFDIEINEKDPQKLVDIVASLEPTFGGINLEDIKA PECFFVERELRKRMKIPVFHDDQHGTAIVVGAGITNALKVVGKDIKQVKLVASGAGAAALACLDLLVDLGLPRENIWVTD LAGVVYEGRTELMDPDKAVFAQKTDKRTLAEVIDGADIFLGLSAAGVLKQDMVKRMADRPIIFALANPNPEIMPELAKEV RPDVIMGTGRTDYPNQVNNVLCFPFIFRGALDVGATTITREMEVAAVHAVAELARQEQSDIVATAYGIQDLSFGPEYLIP KPFDPRLIVKIAPAVAQAAMDSGVAQRPIEDMDAYRQHLQQFVYHSGTLMKPIFSTAKKVPMEHKRIVFAEGEEERVLRA VQVVVDEKLANPILIGRPGVIAHRIERFGLRLREGVDFTIVNPEHDQRFREYWETYYKLMARKGVTPQYAKLEVRRRSTL IGAVMIHKGEADGMICGTVSNTAAHLRYIDQVIGGTNCVYAAMNGLVLPGRQIFLTDTHVNIDPSAEQLAEITIMAAEEL CRFGIKPKVALVSHSNFGSSEAPSAAKMRETLAILRERAPQLEVDGEMHGDAALDQKLRDSLVPDSTLTGEANLLVMPNI DAANIAYNLLKTAAGNNIAIGPILLGAKRPVHILTPSATVRRILNMTALTVVDAAAQAQR
Specific function: Unknown
COG id: COG0281
COG function: function code C; Malic enzyme
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the phosphate acetyltransferase and butyryltransferase family [H]
Homologues:
Organism=Homo sapiens, GI62420882, Length=410, Percent_Identity=27.5609756097561, Blast_Score=91, Evalue=6e-18, Organism=Homo sapiens, GI62420880, Length=410, Percent_Identity=27.5609756097561, Blast_Score=91, Evalue=6e-18, Organism=Homo sapiens, GI239049447, Length=410, Percent_Identity=27.5609756097561, Blast_Score=91, Evalue=6e-18, Organism=Homo sapiens, GI4505143, Length=402, Percent_Identity=26.3681592039801, Blast_Score=90, Evalue=8e-18, Organism=Homo sapiens, GI4505145, Length=319, Percent_Identity=31.0344827586207, Blast_Score=74, Evalue=5e-13, Organism=Homo sapiens, GI270265879, Length=319, Percent_Identity=31.0344827586207, Blast_Score=73, Evalue=8e-13, Organism=Escherichia coli, GI1788806, Length=756, Percent_Identity=62.6984126984127, Blast_Score=981, Evalue=0.0, Organism=Escherichia coli, GI1788635, Length=317, Percent_Identity=33.1230283911672, Blast_Score=157, Evalue=3e-39, Organism=Escherichia coli, GI1788800, Length=321, Percent_Identity=32.0872274143302, Blast_Score=148, Evalue=2e-36, Organism=Caenorhabditis elegans, GI17537199, Length=474, Percent_Identity=25.7383966244726, Blast_Score=77, Evalue=5e-14, Organism=Saccharomyces cerevisiae, GI6322823, Length=239, Percent_Identity=31.7991631799163, Blast_Score=92, Evalue=4e-19, Organism=Drosophila melanogaster, GI281362672, Length=469, Percent_Identity=27.7185501066098, Blast_Score=96, Evalue=9e-20, Organism=Drosophila melanogaster, GI281362674, Length=469, Percent_Identity=27.7185501066098, Blast_Score=96, Evalue=1e-19, Organism=Drosophila melanogaster, GI21356279, Length=469, Percent_Identity=27.7185501066098, Blast_Score=96, Evalue=1e-19, Organism=Drosophila melanogaster, GI24646388, Length=350, Percent_Identity=29.7142857142857, Blast_Score=86, Evalue=9e-17, Organism=Drosophila melanogaster, GI78707242, Length=405, Percent_Identity=27.1604938271605, Blast_Score=86, Evalue=9e-17, Organism=Drosophila melanogaster, GI78707238, Length=405, Percent_Identity=27.1604938271605, Blast_Score=86, Evalue=9e-17, Organism=Drosophila melanogaster, GI24646386, Length=350, Percent_Identity=29.7142857142857, Blast_Score=86, Evalue=1e-16, Organism=Drosophila melanogaster, GI78707240, Length=427, Percent_Identity=26.9320843091335, Blast_Score=85, Evalue=2e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015884 - InterPro: IPR012301 - InterPro: IPR012302 - InterPro: IPR012188 - InterPro: IPR016040 - InterPro: IPR002505 [H]
Pfam domain/function: PF00390 malic; PF03949 Malic_M; PF01515 PTA_PTB [H]
EC number: =1.1.1.40 [H]
Molecular weight: Translated: 85026; Mature: 84895
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTVDTQPQQPARTDEELKAQQRAALRKAALEYHEFPTPGKISVTPTKPLSNQRDLALAY CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEE SPGVAAACEEIVADVSNSFRYTARGNLVAVVTNGTAVLGLGDIGPEAAKPVMEGKAGLFK CCCHHHHHHHHHHHHHCCEEEEECCCEEEEEECCEEEEEECCCCHHHHHHHHHCCHHHHH KFAGIDVFDIEINEKDPQKLVDIVASLEPTFGGINLEDIKAPECFFVERELRKRMKIPVF HHCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCEEHHHHHHHHCCCCEE HDDQHGTAIVVGAGITNALKVVGKDIKQVKLVASGAGAAALACLDLLVDLGLPRENIWVT ECCCCCCEEEEECCHHHHHHHHHCCHHHEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEE DLAGVVYEGRTELMDPDKAVFAQKTDKRTLAEVIDGADIFLGLSAAGVLKQDMVKRMADR HHHHHHCCCCHHCCCCCHHHHHCCCCHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCC PIIFALANPNPEIMPELAKEVRPDVIMGTGRTDYPNQVNNVLCFPFIFRGALDVGATTIT CEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCCCHHHCCEEEHHHHHHHHHHCCCHHHH REMEVAAVHAVAELARQEQSDIVATAYGIQDLSFGPEYLIPKPFDPRLIVKIAPAVAQAA HHHHHHHHHHHHHHHHHHHCCEEEEEECCEECCCCCCCCCCCCCCCEEEEEECHHHHHHH MDSGVAQRPIEDMDAYRQHLQQFVYHSGTLMKPIFSTAKKVPMEHKRIVFAEGEEERVLR HHCCHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHH AVQVVVDEKLANPILIGRPGVIAHRIERFGLRLREGVDFTIVNPEHDQRFREYWETYYKL HHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHH MARKGVTPQYAKLEVRRRSTLIGAVMIHKGEADGMICGTVSNTAAHLRYIDQVIGGTNCV HHHCCCCCHHHHHHHHHHHHEEEEEEEEECCCCCEEEECCCHHHHHHHHHHHHHCCCCEE YAAMNGLVLPGRQIFLTDTHVNIDPSAEQLAEITIMAAEELCRFGIKPKVALVSHSNFGS HHHHCCEECCCCEEEEEECEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC SEAPSAAKMRETLAILRERAPQLEVDGEMHGDAALDQKLRDSLVPDSTLTGEANLLVMPN CCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEECC IDAANIAYNLLKTAAGNNIAIGPILLGAKRPVHILTPSATVRRILNMTALTVVDAAAQAQ CCHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCC R C >Mature Secondary Structure TTVDTQPQQPARTDEELKAQQRAALRKAALEYHEFPTPGKISVTPTKPLSNQRDLALAY CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEE SPGVAAACEEIVADVSNSFRYTARGNLVAVVTNGTAVLGLGDIGPEAAKPVMEGKAGLFK CCCHHHHHHHHHHHHHCCEEEEECCCEEEEEECCEEEEEECCCCHHHHHHHHHCCHHHHH KFAGIDVFDIEINEKDPQKLVDIVASLEPTFGGINLEDIKAPECFFVERELRKRMKIPVF HHCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCEEHHHHHHHHCCCCEE HDDQHGTAIVVGAGITNALKVVGKDIKQVKLVASGAGAAALACLDLLVDLGLPRENIWVT ECCCCCCEEEEECCHHHHHHHHHCCHHHEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEE DLAGVVYEGRTELMDPDKAVFAQKTDKRTLAEVIDGADIFLGLSAAGVLKQDMVKRMADR HHHHHHCCCCHHCCCCCHHHHHCCCCHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCC PIIFALANPNPEIMPELAKEVRPDVIMGTGRTDYPNQVNNVLCFPFIFRGALDVGATTIT CEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCCCHHHCCEEEHHHHHHHHHHCCCHHHH REMEVAAVHAVAELARQEQSDIVATAYGIQDLSFGPEYLIPKPFDPRLIVKIAPAVAQAA HHHHHHHHHHHHHHHHHHHCCEEEEEECCEECCCCCCCCCCCCCCCEEEEEECHHHHHHH MDSGVAQRPIEDMDAYRQHLQQFVYHSGTLMKPIFSTAKKVPMEHKRIVFAEGEEERVLR HHCCHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHH AVQVVVDEKLANPILIGRPGVIAHRIERFGLRLREGVDFTIVNPEHDQRFREYWETYYKL HHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHH MARKGVTPQYAKLEVRRRSTLIGAVMIHKGEADGMICGTVSNTAAHLRYIDQVIGGTNCV HHHCCCCCHHHHHHHHHHHHEEEEEEEEECCCCCEEEECCCHHHHHHHHHHHHHCCCCEE YAAMNGLVLPGRQIFLTDTHVNIDPSAEQLAEITIMAAEELCRFGIKPKVALVSHSNFGS HHHHCCEECCCCEEEEEECEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC SEAPSAAKMRETLAILRERAPQLEVDGEMHGDAALDQKLRDSLVPDSTLTGEANLLVMPN CCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEECC IDAANIAYNLLKTAAGNNIAIGPILLGAKRPVHILTPSATVRRILNMTALTVVDAAAQAQ CCHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCC R C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503; 36376 [H]