| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is yjeE [C]
Identifier: 17547259
GI number: 17547259
Start: 2748839
End: 2749435
Strand: Reverse
Name: yjeE [C]
Synonym: RSc2540
Alternate gene names: 17547259
Gene position: 2749435-2748839 (Counterclockwise)
Preceding gene: 17547267
Following gene: 17547258
Centisome position: 73.98
GC content: 70.69
Gene sequence:
>597_bases ATGCCTAAATTGTACGCAATGCCTCCTGTGCCCACCGTGCCGCCCGCCGCCGCTCCCGCCGGCCCGACCGAACCGCTCGC CGAGCGCACCGTGCCGCTCGTCGATGAGGCCGCCACCGCCGTGTTCGGCGCGGCCTTCGCGCAGGCCGTGCGGGCGCTGG GCCCGCGACCCCTGCAGGTCCAGCTCTCGGGCGACCTGGGCGCGGGCAAGACTACGCTGTCGCGCGCCATCCTGCACGGC CTGGGCCACACCGGCCGCGTGCGCAGCCCCACCTATACACTGGTCGAGCCCTACGAGGTGCCCGGAGCTTCCGGCACGCA GAAGGTCTACCACTTCGACCTGTACCGTTTCGTCGATCCCGAGGAATGGACCGACGCGGGCTTCCGTGACTGCTTCGCCG AGCCCGCGCTGTGCCTGGTCGAATGGCCCGAGAAGGCGCAGGCGCTGCTCGGCACGCCCGACCTGCACATCGCCCTGGCC GTCGACACGGTGCACGAAACCTACGACGACGGCGTTGAACACGCACCACGCCTCGCGCGCCTGAGCGCACGCACGCCGAC CGGCCTTCAACTGTTGCAACTGCTGCCCCCATGCTGA
Upstream 100 bases:
>100_bases CCAGGAACGGATCTGTGCGACAAGCGCGGCCATCCCGGCCTCATCGGCGGGCAGGCGCGCATCGAGACCCGGTTCGGGCA GTGACGTGGGGGTTCCGGAC
Downstream 100 bases:
>100_bases TCAAGCATCTGCCGACCGACCAACCGGACGATTCCCACCTGCCCAGCCAGGCGCGCAGGCAATGGCTGTCGCGCATGGCC CGGGCGGGCGCCGGGACGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 198; Mature: 197
Protein sequence:
>198_residues MPKLYAMPPVPTVPPAAAPAGPTEPLAERTVPLVDEAATAVFGAAFAQAVRALGPRPLQVQLSGDLGAGKTTLSRAILHG LGHTGRVRSPTYTLVEPYEVPGASGTQKVYHFDLYRFVDPEEWTDAGFRDCFAEPALCLVEWPEKAQALLGTPDLHIALA VDTVHETYDDGVEHAPRLARLSARTPTGLQLLQLLPPC
Sequences:
>Translated_198_residues MPKLYAMPPVPTVPPAAAPAGPTEPLAERTVPLVDEAATAVFGAAFAQAVRALGPRPLQVQLSGDLGAGKTTLSRAILHG LGHTGRVRSPTYTLVEPYEVPGASGTQKVYHFDLYRFVDPEEWTDAGFRDCFAEPALCLVEWPEKAQALLGTPDLHIALA VDTVHETYDDGVEHAPRLARLSARTPTGLQLLQLLPPC >Mature_197_residues PKLYAMPPVPTVPPAAAPAGPTEPLAERTVPLVDEAATAVFGAAFAQAVRALGPRPLQVQLSGDLGAGKTTLSRAILHGL GHTGRVRSPTYTLVEPYEVPGASGTQKVYHFDLYRFVDPEEWTDAGFRDCFAEPALCLVEWPEKAQALLGTPDLHIALAV DTVHETYDDGVEHAPRLARLSARTPTGLQLLQLLPPC
Specific function: Unknown
COG id: COG0802
COG function: function code R; Predicted ATPase or kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0079 family [H]
Homologues:
Organism=Escherichia coli, GI1790610, Length=170, Percent_Identity=45.2941176470588, Blast_Score=126, Evalue=1e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003442 [H]
Pfam domain/function: PF02367 UPF0079 [H]
EC number: NA
Molecular weight: Translated: 21178; Mature: 21047
Theoretical pI: Translated: 5.23; Mature: 5.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKLYAMPPVPTVPPAAAPAGPTEPLAERTVPLVDEAATAVFGAAFAQAVRALGPRPLQV CCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE QLSGDLGAGKTTLSRAILHGLGHTGRVRSPTYTLVEPYEVPGASGTQKVYHFDLYRFVDP EECCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCCCCEEEEEHHHHHCCC EEWTDAGFRDCFAEPALCLVEWPEKAQALLGTPDLHIALAVDTVHETYDDGVEHAPRLAR HHHHCCHHHHHHCCCCEEEEECCHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHH LSARTPTGLQLLQLLPPC HCCCCCCHHHHHHHCCCC >Mature Secondary Structure PKLYAMPPVPTVPPAAAPAGPTEPLAERTVPLVDEAATAVFGAAFAQAVRALGPRPLQV CCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE QLSGDLGAGKTTLSRAILHGLGHTGRVRSPTYTLVEPYEVPGASGTQKVYHFDLYRFVDP EECCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCCCCEEEEEHHHHHCCC EEWTDAGFRDCFAEPALCLVEWPEKAQALLGTPDLHIALAVDTVHETYDDGVEHAPRLAR HHHHCCHHHHHHCCCCEEEEECCHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHH LSARTPTGLQLLQLLPPC HCCCCCCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP [C]
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800; 10675023 [H]