| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is ywrD [H]
Identifier: 17547220
GI number: 17547220
Start: 2707244
End: 2708902
Strand: Direct
Name: ywrD [H]
Synonym: RSc2501
Alternate gene names: 17547220
Gene position: 2707244-2708902 (Clockwise)
Preceding gene: 17547218
Following gene: 17547222
Centisome position: 72.85
GC content: 70.58
Gene sequence:
>1659_bases ATGAGCCGCCTCCCTTTCCTCGCGCGCATGTCCCACCATCGCTTCGCCTGGCAGAACCCCTATCCCACCGTGCGCATTCC GCTGTTCGCGCGCAATGTCGTATCGACCTCGCATCCGCTGGCGGCGCAGGCGGGACTGCGCATGCTGCTGGCCGGCGGCA GCGCGGTCGACGCGGCGATCGCGGCGGCGGCCATGCTCACCATCGTCGAACCGGTGTCGTGCGGCCTGGGCAGCGATGCT TTCGCCATCCTGTGGGACGGTGCCCGCCTGTACGGCCTCAATGCGTCGGGCGCCGCGCCGCGGGACTGGAGCCTCGGCTA CTTCCGCCGCAAGTACGGCGAAGACGCCCACGGCCACCCCAGGCGCCCCACGCGCGGCTGGGACACGGTGACGGTGCCGG GCGCCGTCTCGGCCTGGGCGACCCTGCATGAACGCTTCGGCAAGCTACCGTTCGCCGATGTGCTGGAGCCGGCGGCGGAG ATCGCAGAACGCGGCCACGCCATCGCCCCCATCGTCGCGCATAAGTGGGCGGCGGCGATCCCCGAACTGCACGGCCAGCC CGGCTACGCACAGGCCTTCATGCCGCACGGCCGCGCGCCCGGCGTGGGCGAGAAATTCCTCCTGCGCGATGCGGCCGCCA CGCTGCGCCGCATCGGCGAAACGCGCGGGCGCGACTTCTATGAAGGCGAGCTTGCCAAGCGCATCGCCGCGCATGCGCAT GCATGCGGCGGCGCGCTGACCGCGCAAGACCTGCGCGACCACCGGCCCGAATGGGTCACGCCGATCCAGCAGCGCTACCG CGGCTACGACGTGCACGAGCTTCCGCCCAACGGCCAGGGCATCGCTGCGCTCGCGGCGCTGGGCATCCTCGAGCGCTTCG ACCTCGGCGCCCTGCCGGTCGATTCGGCGGATACGCTGCACCTGCAGATCGAGGCGATGAAGCTGGCGTTCGCCGATCTC TACCGCTACGTGGCCGACCCGCGCGCGATGGACGTCACGCCGGAGCAGATGCTCGACGACAGCTACCTCGACGCGCGTGC CAGGCGCATCGACATGGGCCGCGCCGGCCATCCGGGCTTCGGCATGCCGCGTGCCGGCGGCACCGTCTATCTGAGCGCGG CCGACGAGCGCGGCATGATGGTCTCGTTCATCCAGTCCAACTACATGGGCTTCGGGTCGGGCGTGGTGGTGCCGGGTACC GGCATCAGCCTGCAGAACCGGGGCGTCGGCTTCTCGATGGATGCGCGCTCGGCCAACGTGGTGGAAGGCGGCAAGCGGCC GTTCCATACCATCATCCCGGCGTTCCTGACGCGGGACGGCGCGCCGGTGATGAGCTTCGGCGTGATGGGCGGCGACATGC AGCCGCAAGGCCATCTGCAAACGCTGGTGCGCATGCTCGACTACCACCAGCAGCCGCAGGCCGCCTGCGATGCGCCGCGC TGGAAGGTCAACCGCGATTTCACGCTCGACGTGGAAGCCGCGCTGAACGCCGACACCGTCGCCGCCCTGCAGGCGCGGGG CCACCGGCTCAAGGCGGTGGCCGATCCGTATATGGATTTCGGCGCGGGCCAGTTCATCTGGCGCCTGTCCGACGATGCCG ACCACGGCTACGTGGCCGCCAGCGACAGCCGCCGCGACGGGCACGCCGTCGGATACTGA
Upstream 100 bases:
>100_bases GCGGCCTCCAGGCCGAGTGGCAGATACCTCAAGTCTAGGCGCTGACCGTGCCAAGTGTGGTTTCGAGCGCATCGAGTATG GGCCGAATCACACGTAATCT
Downstream 100 bases:
>100_bases GCGCCAAACCCATCCGACACATCGCCGCTGGCTCCCAAGCCCCCTGCTCAGGTCGTGCGATGCGCCCGCTCCGCGCCCCC TTCACGCCCGCGCGCACCGG
Product: gamma-glutamyltranspeptidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 552; Mature: 551
Protein sequence:
>552_residues MSRLPFLARMSHHRFAWQNPYPTVRIPLFARNVVSTSHPLAAQAGLRMLLAGGSAVDAAIAAAAMLTIVEPVSCGLGSDA FAILWDGARLYGLNASGAAPRDWSLGYFRRKYGEDAHGHPRRPTRGWDTVTVPGAVSAWATLHERFGKLPFADVLEPAAE IAERGHAIAPIVAHKWAAAIPELHGQPGYAQAFMPHGRAPGVGEKFLLRDAAATLRRIGETRGRDFYEGELAKRIAAHAH ACGGALTAQDLRDHRPEWVTPIQQRYRGYDVHELPPNGQGIAALAALGILERFDLGALPVDSADTLHLQIEAMKLAFADL YRYVADPRAMDVTPEQMLDDSYLDARARRIDMGRAGHPGFGMPRAGGTVYLSAADERGMMVSFIQSNYMGFGSGVVVPGT GISLQNRGVGFSMDARSANVVEGGKRPFHTIIPAFLTRDGAPVMSFGVMGGDMQPQGHLQTLVRMLDYHQQPQAACDAPR WKVNRDFTLDVEAALNADTVAALQARGHRLKAVADPYMDFGAGQFIWRLSDDADHGYVAASDSRRDGHAVGY
Sequences:
>Translated_552_residues MSRLPFLARMSHHRFAWQNPYPTVRIPLFARNVVSTSHPLAAQAGLRMLLAGGSAVDAAIAAAAMLTIVEPVSCGLGSDA FAILWDGARLYGLNASGAAPRDWSLGYFRRKYGEDAHGHPRRPTRGWDTVTVPGAVSAWATLHERFGKLPFADVLEPAAE IAERGHAIAPIVAHKWAAAIPELHGQPGYAQAFMPHGRAPGVGEKFLLRDAAATLRRIGETRGRDFYEGELAKRIAAHAH ACGGALTAQDLRDHRPEWVTPIQQRYRGYDVHELPPNGQGIAALAALGILERFDLGALPVDSADTLHLQIEAMKLAFADL YRYVADPRAMDVTPEQMLDDSYLDARARRIDMGRAGHPGFGMPRAGGTVYLSAADERGMMVSFIQSNYMGFGSGVVVPGT GISLQNRGVGFSMDARSANVVEGGKRPFHTIIPAFLTRDGAPVMSFGVMGGDMQPQGHLQTLVRMLDYHQQPQAACDAPR WKVNRDFTLDVEAALNADTVAALQARGHRLKAVADPYMDFGAGQFIWRLSDDADHGYVAASDSRRDGHAVGY >Mature_551_residues SRLPFLARMSHHRFAWQNPYPTVRIPLFARNVVSTSHPLAAQAGLRMLLAGGSAVDAAIAAAAMLTIVEPVSCGLGSDAF AILWDGARLYGLNASGAAPRDWSLGYFRRKYGEDAHGHPRRPTRGWDTVTVPGAVSAWATLHERFGKLPFADVLEPAAEI AERGHAIAPIVAHKWAAAIPELHGQPGYAQAFMPHGRAPGVGEKFLLRDAAATLRRIGETRGRDFYEGELAKRIAAHAHA CGGALTAQDLRDHRPEWVTPIQQRYRGYDVHELPPNGQGIAALAALGILERFDLGALPVDSADTLHLQIEAMKLAFADLY RYVADPRAMDVTPEQMLDDSYLDARARRIDMGRAGHPGFGMPRAGGTVYLSAADERGMMVSFIQSNYMGFGSGVVVPGTG ISLQNRGVGFSMDARSANVVEGGKRPFHTIIPAFLTRDGAPVMSFGVMGGDMQPQGHLQTLVRMLDYHQQPQAACDAPRW KVNRDFTLDVEAALNADTVAALQARGHRLKAVADPYMDFGAGQFIWRLSDDADHGYVAASDSRRDGHAVGY
Specific function: GGT PLAYS A KEY ROLE IN THE GAMMA-GLUTAMYL CYCLE, A PATHWAY FOR THE SYNTHESIS AND DEGRADATION OF GLUTATHIONE. [C]
COG id: COG0405
COG function: function code E; Gamma-glutamyltransferase
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the gamma-glutamyltransferase family [H]
Homologues:
Organism=Homo sapiens, GI73915092, Length=552, Percent_Identity=26.6304347826087, Blast_Score=145, Evalue=8e-35, Organism=Homo sapiens, GI73915090, Length=552, Percent_Identity=26.6304347826087, Blast_Score=145, Evalue=8e-35, Organism=Homo sapiens, GI73915096, Length=552, Percent_Identity=26.6304347826087, Blast_Score=145, Evalue=8e-35, Organism=Homo sapiens, GI73915094, Length=552, Percent_Identity=26.6304347826087, Blast_Score=145, Evalue=8e-35, Organism=Homo sapiens, GI113429324, Length=551, Percent_Identity=25.9528130671506, Blast_Score=135, Evalue=8e-32, Organism=Homo sapiens, GI113429326, Length=556, Percent_Identity=25.7194244604317, Blast_Score=132, Evalue=1e-30, Organism=Homo sapiens, GI109148539, Length=519, Percent_Identity=29.2870905587669, Blast_Score=126, Evalue=4e-29, Organism=Homo sapiens, GI153266885, Length=550, Percent_Identity=24.7272727272727, Blast_Score=109, Evalue=6e-24, Organism=Homo sapiens, GI153266901, Length=551, Percent_Identity=24.8638838475499, Blast_Score=107, Evalue=3e-23, Organism=Homo sapiens, GI153266907, Length=548, Percent_Identity=24.0875912408759, Blast_Score=103, Evalue=3e-22, Organism=Homo sapiens, GI30581157, Length=207, Percent_Identity=29.4685990338164, Blast_Score=67, Evalue=5e-11, Organism=Homo sapiens, GI30581155, Length=207, Percent_Identity=29.4685990338164, Blast_Score=67, Evalue=5e-11, Organism=Escherichia coli, GI1789856, Length=504, Percent_Identity=27.7777777777778, Blast_Score=181, Evalue=2e-46, Organism=Caenorhabditis elegans, GI72000294, Length=515, Percent_Identity=25.0485436893204, Blast_Score=112, Evalue=4e-25, Organism=Caenorhabditis elegans, GI212646519, Length=515, Percent_Identity=25.2427184466019, Blast_Score=112, Evalue=4e-25, Organism=Caenorhabditis elegans, GI17506189, Length=560, Percent_Identity=24.4642857142857, Blast_Score=106, Evalue=4e-23, Organism=Caenorhabditis elegans, GI17542894, Length=566, Percent_Identity=23.8515901060071, Blast_Score=102, Evalue=5e-22, Organism=Drosophila melanogaster, GI24642670, Length=568, Percent_Identity=23.943661971831, Blast_Score=129, Evalue=5e-30, Organism=Drosophila melanogaster, GI24642666, Length=568, Percent_Identity=23.943661971831, Blast_Score=129, Evalue=5e-30, Organism=Drosophila melanogaster, GI161077880, Length=568, Percent_Identity=24.1197183098592, Blast_Score=129, Evalue=6e-30, Organism=Drosophila melanogaster, GI161077878, Length=568, Percent_Identity=23.943661971831, Blast_Score=129, Evalue=7e-30, Organism=Drosophila melanogaster, GI45551474, Length=568, Percent_Identity=23.943661971831, Blast_Score=129, Evalue=7e-30, Organism=Drosophila melanogaster, GI18859893, Length=485, Percent_Identity=24.7422680412371, Blast_Score=112, Evalue=6e-25, Organism=Drosophila melanogaster, GI18859741, Length=562, Percent_Identity=25.4448398576512, Blast_Score=107, Evalue=3e-23, Organism=Drosophila melanogaster, GI161077496, Length=512, Percent_Identity=22.65625, Blast_Score=94, Evalue=2e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000101 [H]
Pfam domain/function: PF01019 G_glu_transpept [H]
EC number: =2.3.2.2 [H]
Molecular weight: Translated: 59825; Mature: 59693
Theoretical pI: Translated: 7.63; Mature: 7.63
Prosite motif: PS00678 WD_REPEATS_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRLPFLARMSHHRFAWQNPYPTVRIPLFARNVVSTSHPLAAQAGLRMLLAGGSAVDAAI CCCCCHHHHHHCCCCCCCCCCCEEEEEHHHHHHHCCCCCHHHHHCCEEEEECCCHHHHHH AAAAMLTIVEPVSCGLGSDAFAILWDGARLYGLNASGAAPRDWSLGYFRRKYGEDAHGHP HHHHHHHHHHHHHCCCCCCCEEEEECCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCC RRPTRGWDTVTVPGAVSAWATLHERFGKLPFADVLEPAAEIAERGHAIAPIVAHKWAAAI CCCCCCCCEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHH PELHGQPGYAQAFMPHGRAPGVGEKFLLRDAAATLRRIGETRGRDFYEGELAKRIAAHAH HHHCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH ACGGALTAQDLRDHRPEWVTPIQQRYRGYDVHELPPNGQGIAALAALGILERFDLGALPV HCCCCCCHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC DSADTLHLQIEAMKLAFADLYRYVADPRAMDVTPEQMLDDSYLDARARRIDMGRAGHPGF CCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCHHHHHCHHHHHHHHHHCCCCCCCCCCC GMPRAGGTVYLSAADERGMMVSFIQSNYMGFGSGVVVPGTGISLQNRGVGFSMDARSANV CCCCCCCEEEEEECCCCCCCCEEHHHCCCCCCCCEEECCCCCEECCCCCCEEECCCCCCH VEGGKRPFHTIIPAFLTRDGAPVMSFGVMGGDMQPQGHLQTLVRMLDYHQQPQAACDAPR HCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCHHHCCCCC WKVNRDFTLDVEAALNADTVAALQARGHRLKAVADPYMDFGAGQFIWRLSDDADHGYVAA EECCCCEEEEEHHHCCCHHHHHHHHCCCEEEHHHCHHHHCCCCEEEEEECCCCCCCEEEE SDSRRDGHAVGY CCCCCCCCCCCC >Mature Secondary Structure SRLPFLARMSHHRFAWQNPYPTVRIPLFARNVVSTSHPLAAQAGLRMLLAGGSAVDAAI CCCCHHHHHHCCCCCCCCCCCEEEEEHHHHHHHCCCCCHHHHHCCEEEEECCCHHHHHH AAAAMLTIVEPVSCGLGSDAFAILWDGARLYGLNASGAAPRDWSLGYFRRKYGEDAHGHP HHHHHHHHHHHHHCCCCCCCEEEEECCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCC RRPTRGWDTVTVPGAVSAWATLHERFGKLPFADVLEPAAEIAERGHAIAPIVAHKWAAAI CCCCCCCCEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHH PELHGQPGYAQAFMPHGRAPGVGEKFLLRDAAATLRRIGETRGRDFYEGELAKRIAAHAH HHHCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH ACGGALTAQDLRDHRPEWVTPIQQRYRGYDVHELPPNGQGIAALAALGILERFDLGALPV HCCCCCCHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC DSADTLHLQIEAMKLAFADLYRYVADPRAMDVTPEQMLDDSYLDARARRIDMGRAGHPGF CCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCHHHHHCHHHHHHHHHHCCCCCCCCCCC GMPRAGGTVYLSAADERGMMVSFIQSNYMGFGSGVVVPGTGISLQNRGVGFSMDARSANV CCCCCCCEEEEEECCCCCCCCEEHHHCCCCCCCCEEECCCCCEECCCCCCEEECCCCCCH VEGGKRPFHTIIPAFLTRDGAPVMSFGVMGGDMQPQGHLQTLVRMLDYHQQPQAACDAPR HCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCHHHCCCCC WKVNRDFTLDVEAALNADTVAALQARGHRLKAVADPYMDFGAGQFIWRLSDDADHGYVAA EECCCCEEEEEHHHCCCHHHHHHHHCCCEEEHHHCHHHHCCCCEEEEEECCCCCCCEEEE SDSRRDGHAVGY CCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9353933; 9384377 [H]