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The map label for this gene is yurK [H]

Identifier: 17546716

GI number: 17546716

Start: 2173626

End: 2174450

Strand: Reverse

Name: yurK [H]

Synonym: RSc1997

Alternate gene names: 17546716

Gene position: 2174450-2173626 (Counterclockwise)

Preceding gene: 17546727

Following gene: 17546715

Centisome position: 58.51

GC content: 67.03

Gene sequence:

>825_bases
GTGGTGAAATCGACAGCTATGTCGAGTGCCTCCACTTCCAATTCCGCCGCCGTGCCGCCGTCTCCGGGCAGCGAGGCGGG
CGCGTCGCCCGCGGGCGTGGGAGCCGGGGCGCCCACCTTCAGCCCGCTGTACCAGCAGATCAAGACGCTGATCCTGCAGA
GCCTGCAGGCCGGCGAGTGGAAGCCGGGCGAGATGATCCCCTCCGAGATGGAACTGGCGGCCCGCTACAAGGTCAGCCAG
GGCACGGTGCGCAAGGCCATCGACGAACTGGCGGCCGAAAACCTGGTCGCGCGGCGGCAGGGCAAGGGCACCTTCGTTAC
CACGCATTACGAAGAGGGCGTGCAGTTCCGCTTCCTGCGGTTGATGCCGGAGCAGGGCGAGCAGCACTATCCGAGCAGCC
GCGTGCTGGAGTGCAAGCGCCTGCGCGCGCCCGCCGAGATCGCCCGCCTGCTCGACCTCAAGCCGGGCGACAGCGTGGTG
CAGATCCGCCGCGTGCTGTTCTTCTCCGGCGAGCCGACCGTGTTCGAAGAGATCTGGCTGCCCGGCTCGAGCTTCAAGGG
TCTGACGGCCGAAAAGCTCACCGACTGGAAGGGGCCGATGTACGCATTTTTTGAGGCCGAGTTCGGTGTGCGCATGTTGC
GTGCCACCGAGCGCATCCGCGCCGTGGCCGCGGATGCGGGCACGGCCGGGCTGCTGTCGGTGGCGCCGGGTTCGCCGTTG
CTGTCGGTCGAGCGGGTGTCGCACACGTTTGGTGACAAGCCGGTGGAGCTGCGTCGCGGCCTGTATGTCACGACGCGGCA
CTATTACCAGAATGAATTGAGTTGA

Upstream 100 bases:

>100_bases
GCGCGAGTGTAGGCCGGGGCCCTTGTGAAGTCAACGAATCTTCTGTCTTATATAAGACATAAGACATTCTATAAACGGGC
TGGACGCGTGGATCGCTTTT

Downstream 100 bases:

>100_bases
CGGTGCGCCGTCGTGCCGGCCCCACTGGCCCGGCGGCGCTTGATTTGTGGCGTGCGCAACAGTGTATTGCGCGCCGTGAA
GACGGGGGAGGGCAATCGTT

Product: transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MVKSTAMSSASTSNSAAVPPSPGSEAGASPAGVGAGAPTFSPLYQQIKTLILQSLQAGEWKPGEMIPSEMELAARYKVSQ
GTVRKAIDELAAENLVARRQGKGTFVTTHYEEGVQFRFLRLMPEQGEQHYPSSRVLECKRLRAPAEIARLLDLKPGDSVV
QIRRVLFFSGEPTVFEEIWLPGSSFKGLTAEKLTDWKGPMYAFFEAEFGVRMLRATERIRAVAADAGTAGLLSVAPGSPL
LSVERVSHTFGDKPVELRRGLYVTTRHYYQNELS

Sequences:

>Translated_274_residues
MVKSTAMSSASTSNSAAVPPSPGSEAGASPAGVGAGAPTFSPLYQQIKTLILQSLQAGEWKPGEMIPSEMELAARYKVSQ
GTVRKAIDELAAENLVARRQGKGTFVTTHYEEGVQFRFLRLMPEQGEQHYPSSRVLECKRLRAPAEIARLLDLKPGDSVV
QIRRVLFFSGEPTVFEEIWLPGSSFKGLTAEKLTDWKGPMYAFFEAEFGVRMLRATERIRAVAADAGTAGLLSVAPGSPL
LSVERVSHTFGDKPVELRRGLYVTTRHYYQNELS
>Mature_274_residues
MVKSTAMSSASTSNSAAVPPSPGSEAGASPAGVGAGAPTFSPLYQQIKTLILQSLQAGEWKPGEMIPSEMELAARYKVSQ
GTVRKAIDELAAENLVARRQGKGTFVTTHYEEGVQFRFLRLMPEQGEQHYPSSRVLECKRLRAPAEIARLLDLKPGDSVV
QIRRVLFFSGEPTVFEEIWLPGSSFKGLTAEKLTDWKGPMYAFFEAEFGVRMLRATERIRAVAADAGTAGLLSVAPGSPL
LSVERVSHTFGDKPVELRRGLYVTTRHYYQNELS

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082252, Length=219, Percent_Identity=29.6803652968037, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1790118, Length=210, Percent_Identity=28.5714285714286, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786950, Length=213, Percent_Identity=29.1079812206573, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1790540, Length=226, Percent_Identity=28.7610619469027, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788418, Length=237, Percent_Identity=24.0506329113924, Blast_Score=71, Evalue=8e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 29952; Mature: 29952

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKSTAMSSASTSNSAAVPPSPGSEAGASPAGVGAGAPTFSPLYQQIKTLILQSLQAGEW
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
KPGEMIPSEMELAARYKVSQGTVRKAIDELAAENLVARRQGKGTFVTTHYEEGVQFRFLR
CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEE
LMPEQGEQHYPSSRVLECKRLRAPAEIARLLDLKPGDSVVQIRRVLFFSGEPTVFEEIWL
ECCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHCC
PGSSFKGLTAEKLTDWKGPMYAFFEAEFGVRMLRATERIRAVAADAGTAGLLSVAPGSPL
CCCCCCCCCHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCC
LSVERVSHTFGDKPVELRRGLYVTTRHYYQNELS
HHHHHHHHHHCCCCHHHHCCEEEEEHHHHHCCCC
>Mature Secondary Structure
MVKSTAMSSASTSNSAAVPPSPGSEAGASPAGVGAGAPTFSPLYQQIKTLILQSLQAGEW
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
KPGEMIPSEMELAARYKVSQGTVRKAIDELAAENLVARRQGKGTFVTTHYEEGVQFRFLR
CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEE
LMPEQGEQHYPSSRVLECKRLRAPAEIARLLDLKPGDSVVQIRRVLFFSGEPTVFEEIWL
ECCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHCC
PGSSFKGLTAEKLTDWKGPMYAFFEAEFGVRMLRATERIRAVAADAGTAGLLSVAPGSPL
CCCCCCCCCHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCC
LSVERVSHTFGDKPVELRRGLYVTTRHYYQNELS
HHHHHHHHHHCCCCHHHHCCEEEEEHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]