| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is 17545927
Identifier: 17545927
GI number: 17545927
Start: 1276644
End: 1277513
Strand: Reverse
Name: 17545927
Synonym: RSc1208
Alternate gene names: NA
Gene position: 1277513-1276644 (Counterclockwise)
Preceding gene: 17545929
Following gene: 17545922
Centisome position: 34.37
GC content: 68.16
Gene sequence:
>870_bases ATGGGCACCATCATCCTGACATGGAACATCCAGTGGGGCCGCGGTGCGGATGGCCGGGTCGACCTGTCGCGCATGCTGGC CGAAGCGCGCGCCATGGGGTCGTTCGACGTGCTGTGCCTGCAGGAGGTCACGTCGGGCTTCGGCCATCTGCCCGGCCAAC CGGGCGAGGACCAGTGGCAGGAACTGGCCGGAGCGCTCGGACAGGCATTCACCCTGATCGACGGCATCGCACTGGAGCGC CACGAGGGCGCACAGATCCGGCGCTTCGGCAATGCCATCGCCACGCGGCTGCCGGTGCTGCACGTCGCGCGGCATGCCCT GCCCTGTCCGGCCGATGCCGGCCCGACCATGCCGCGCATGGCCATCGAGGCGATTGTGCAGGCGCCATTCGGGCCGCTGC GCGTGGTCAGCACGCACCTGGAGTATTACTCGGAAACGCAGCGCATCGCGCAAATTGACGCCCTGCGCGCGCTTCATGTG GAGGGCTGCATGCGCGCGGCCCATCCACCCACGCTGGGGCCGGAACCCACCGATGGCCCGTTTCGTCCGCTCGCGCAGAC ACGCGCCACCGTCATCTGCGGCGATTTCAACTGCAAGCCGGATTCCAAGCCCAAGCGGCTCGCCACCGTACCGTTCTCAC ATGAGGCAGCAGCCCTGTACGACGCCTGGGAAACCGCACACGGCCCCACGCCGCAACCGCCGACATTCGGCGTGCATGAC CGGACCGGGTGGACGGAGCCGGCCTACGCCTGCGATTTCATGCTGGTCAGCGAACCGCTGAAGACGCGCGTGACCCGCGT GGAAGTCAACAGCACGACGCAGGCATCCGACCACCAGCCAACGCTGCTGGAGCTGCGCGACGCGGAATAG
Upstream 100 bases:
>100_bases AACCGGCGACGAGGGCAAAGCAGGAGGTGCGGCTTGAGACACGGGCGAGCCTGGGCGAATTGGGGACAAGGGCGGCATTG TAAGACACCGGAGGACAGGC
Downstream 100 bases:
>100_bases ACAACGTGGATGAATTAAGCGCTGGGCGGCGCCTTACAGCACCGCATCCTTGCGCACGCCTTGCGAGGCGAAGTGCCGCT TGAGCTTGACCAGCGCTTCC
Product: hypothetical protein
Products: NA
Alternate protein names: Metal-Dependent Hydrolase; Phosphatase; Endonuclease/Exonuclease/Phosphatase Family Protein; Phosphatase Protein; Endonuclease / Exonuclease / Phosphatase; Metal-Dependent Exonuclease Protein
Number of amino acids: Translated: 289; Mature: 288
Protein sequence:
>289_residues MGTIILTWNIQWGRGADGRVDLSRMLAEARAMGSFDVLCLQEVTSGFGHLPGQPGEDQWQELAGALGQAFTLIDGIALER HEGAQIRRFGNAIATRLPVLHVARHALPCPADAGPTMPRMAIEAIVQAPFGPLRVVSTHLEYYSETQRIAQIDALRALHV EGCMRAAHPPTLGPEPTDGPFRPLAQTRATVICGDFNCKPDSKPKRLATVPFSHEAAALYDAWETAHGPTPQPPTFGVHD RTGWTEPAYACDFMLVSEPLKTRVTRVEVNSTTQASDHQPTLLELRDAE
Sequences:
>Translated_289_residues MGTIILTWNIQWGRGADGRVDLSRMLAEARAMGSFDVLCLQEVTSGFGHLPGQPGEDQWQELAGALGQAFTLIDGIALER HEGAQIRRFGNAIATRLPVLHVARHALPCPADAGPTMPRMAIEAIVQAPFGPLRVVSTHLEYYSETQRIAQIDALRALHV EGCMRAAHPPTLGPEPTDGPFRPLAQTRATVICGDFNCKPDSKPKRLATVPFSHEAAALYDAWETAHGPTPQPPTFGVHD RTGWTEPAYACDFMLVSEPLKTRVTRVEVNSTTQASDHQPTLLELRDAE >Mature_288_residues GTIILTWNIQWGRGADGRVDLSRMLAEARAMGSFDVLCLQEVTSGFGHLPGQPGEDQWQELAGALGQAFTLIDGIALERH EGAQIRRFGNAIATRLPVLHVARHALPCPADAGPTMPRMAIEAIVQAPFGPLRVVSTHLEYYSETQRIAQIDALRALHVE GCMRAAHPPTLGPEPTDGPFRPLAQTRATVICGDFNCKPDSKPKRLATVPFSHEAAALYDAWETAHGPTPQPPTFGVHDR TGWTEPAYACDFMLVSEPLKTRVTRVEVNSTTQASDHQPTLLELRDAE
Specific function: Unknown
COG id: COG3568
COG function: function code R; Metal-dependent hydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31523; Mature: 31392
Theoretical pI: Translated: 6.12; Mature: 6.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTIILTWNIQWGRGADGRVDLSRMLAEARAMGSFDVLCLQEVTSGFGHLPGQPGEDQWQ CCEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHH ELAGALGQAFTLIDGIALERHEGAQIRRFGNAIATRLPVLHVARHALPCPADAGPTMPRM HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH AIEAIVQAPFGPLRVVSTHLEYYSETQRIAQIDALRALHVEGCMRAAHPPTLGPEPTDGP HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC FRPLAQTRATVICGDFNCKPDSKPKRLATVPFSHEAAALYDAWETAHGPTPQPPTFGVHD CCHHHHCCEEEEEECCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC RTGWTEPAYACDFMLVSEPLKTRVTRVEVNSTTQASDHQPTLLELRDAE CCCCCCCHHHHHHHHHCCHHHHHEEEEEECCCCCCCCCCCCEEEEECCC >Mature Secondary Structure GTIILTWNIQWGRGADGRVDLSRMLAEARAMGSFDVLCLQEVTSGFGHLPGQPGEDQWQ CEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHH ELAGALGQAFTLIDGIALERHEGAQIRRFGNAIATRLPVLHVARHALPCPADAGPTMPRM HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH AIEAIVQAPFGPLRVVSTHLEYYSETQRIAQIDALRALHVEGCMRAAHPPTLGPEPTDGP HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC FRPLAQTRATVICGDFNCKPDSKPKRLATVPFSHEAAALYDAWETAHGPTPQPPTFGVHD CCHHHHCCEEEEEECCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC RTGWTEPAYACDFMLVSEPLKTRVTRVEVNSTTQASDHQPTLLELRDAE CCCCCCCHHHHHHHHHCCHHHHHEEEEEECCCCCCCCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA