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The map label for this gene is yccA [H]

Identifier: 17545929

GI number: 17545929

Start: 1279105

End: 1279806

Strand: Reverse

Name: yccA [H]

Synonym: RSc1210

Alternate gene names: 17545929

Gene position: 1279806-1279105 (Counterclockwise)

Preceding gene: 17545950

Following gene: 17545927

Centisome position: 34.44

GC content: 61.54

Gene sequence:

>702_bases
ATGGACAACCAACTCAACACGTACGGTTTTGGCGCTTCCGGCACCGCCGGCGCGTTGGCCGTCCGCAACCGCGTGCTGCG
CAATACCTATTGGCTGCTCGCACTTTCGATGATCCCCACCATCCTGGGTGCATGGATCGGTGTCGCCACGGGCTTCAACC
TGATGGCCGGCCGGCCGCTGATGGGCTTCCTGATCTTCATGGGGGTGGCCTTCGGCTTCTTCTACGCCATCGAACGCTTC
AAGAACAGCGGCATGGGCGTTGCCTTGCTGCTCGGCTTCACGTTCTTCATGGGGCTCATGCTGTCGCGGCTGATCGGCAT
GATCCTCGGCTTCTCGAACGGCGCAGCACTGATCATGACGGCGTTCGGCGGCACGGCAACCATCTTTGCTGTGATGGCCA
CCGTGGCCACCGTCAGCAAGCGCGATTTCTCCGGCCTGGGCAAGTGGCTGTTCATGGGCGTGCTGGTGCTGATCGTCGGC
TCCGTGGCCAACATCTGGCTGCAGCTGCCGTCGATGATGCTGACGATCTCGGTACTGGCCATCGCCATCTTCTCGGCCTA
CATCCTGTACGACGTGCAGCGCATCGTGAACGGCGGCGAGACCAACTACGTGACGGCCACGCTGGCGATCTACCTGGACG
TCTACAACGTCTTCACGAATCTGCTGGCGATCCTGGGCATCTTTGGCGGCAACCGCAACTGA

Upstream 100 bases:

>100_bases
TGCTCAAACCAGCGATGATGCGGCTTGCAAAACCGCACTCCGGATGCCACATTCTGGCCGATCCGCATTGTCTGCAATGT
CACCCACCCAAGGAGTTCGC

Downstream 100 bases:

>100_bases
TGCCGCGCCTGCGCCGGATCCGGCGCAGCAGACGAAAAAAAAACCGGCGCCCGATGCGCCGGTTTTTCTTTGCCGGAACG
CGCCTCAGGCGCGCTCGAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MDNQLNTYGFGASGTAGALAVRNRVLRNTYWLLALSMIPTILGAWIGVATGFNLMAGRPLMGFLIFMGVAFGFFYAIERF
KNSGMGVALLLGFTFFMGLMLSRLIGMILGFSNGAALIMTAFGGTATIFAVMATVATVSKRDFSGLGKWLFMGVLVLIVG
SVANIWLQLPSMMLTISVLAIAIFSAYILYDVQRIVNGGETNYVTATLAIYLDVYNVFTNLLAILGIFGGNRN

Sequences:

>Translated_233_residues
MDNQLNTYGFGASGTAGALAVRNRVLRNTYWLLALSMIPTILGAWIGVATGFNLMAGRPLMGFLIFMGVAFGFFYAIERF
KNSGMGVALLLGFTFFMGLMLSRLIGMILGFSNGAALIMTAFGGTATIFAVMATVATVSKRDFSGLGKWLFMGVLVLIVG
SVANIWLQLPSMMLTISVLAIAIFSAYILYDVQRIVNGGETNYVTATLAIYLDVYNVFTNLLAILGIFGGNRN
>Mature_233_residues
MDNQLNTYGFGASGTAGALAVRNRVLRNTYWLLALSMIPTILGAWIGVATGFNLMAGRPLMGFLIFMGVAFGFFYAIERF
KNSGMGVALLLGFTFFMGLMLSRLIGMILGFSNGAALIMTAFGGTATIFAVMATVATVSKRDFSGLGKWLFMGVLVLIVG
SVANIWLQLPSMMLTISVLAIAIFSAYILYDVQRIVNGGETNYVTATLAIYLDVYNVFTNLLAILGIFGGNRN

Specific function: Unknown

COG id: COG0670

COG function: function code R; Integral membrane protein, interacts with FtsH

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BI1 family [H]

Homologues:

Organism=Escherichia coli, GI1787205, Length=216, Percent_Identity=33.7962962962963, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1787004, Length=164, Percent_Identity=31.0975609756098, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006213
- InterPro:   IPR006214 [H]

Pfam domain/function: PF01027 UPF0005 [H]

EC number: NA

Molecular weight: Translated: 25046; Mature: 25046

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.0 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNQLNTYGFGASGTAGALAVRNRVLRNTYWLLALSMIPTILGAWIGVATGFNLMAGRPL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHH
MGFLIFMGVAFGFFYAIERFKNSGMGVALLLGFTFFMGLMLSRLIGMILGFSNGAALIMT
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
AFGGTATIFAVMATVATVSKRDFSGLGKWLFMGVLVLIVGSVANIWLQLPSMMLTISVLA
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAIFSAYILYDVQRIVNGGETNYVTATLAIYLDVYNVFTNLLAILGIFGGNRN
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDNQLNTYGFGASGTAGALAVRNRVLRNTYWLLALSMIPTILGAWIGVATGFNLMAGRPL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHH
MGFLIFMGVAFGFFYAIERFKNSGMGVALLLGFTFFMGLMLSRLIGMILGFSNGAALIMT
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
AFGGTATIFAVMATVATVSKRDFSGLGKWLFMGVLVLIVGSVANIWLQLPSMMLTISVLA
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAIFSAYILYDVQRIVNGGETNYVTATLAIYLDVYNVFTNLLAILGIFGGNRN
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]