Click here to switch to the map view.

The map label for this gene is 17545914

Identifier: 17545914

GI number: 17545914

Start: 1263160

End: 1264665

Strand: Reverse

Name: 17545914

Synonym: RSc1195

Alternate gene names: NA

Gene position: 1264665-1263160 (Counterclockwise)

Preceding gene: 17545922

Following gene: 17545907

Centisome position: 34.03

GC content: 68.46

Gene sequence:

>1506_bases
TTGCGCCCCGTTTACCATGGCGGAGTTTCCGCCCGCCCGGGCACAAGCCTGGAATTCTACCGGCTGCCCCTGTCGCCGAG
CCCCATGCCCTTGCTGTTTCCCCGCCAGATCGCCCGCCCTTTGCCCCGGCACACGGAACGTGCCGCCGCCCGCCGCCTGC
GCAACACCCTTGCGGCCCTCGCGCTCGGCCTGGGCCTGCACGGCACGGCACTGGCCGATCCGGCCGCCCCCAATGCCCCC
GAGCCCGCGGCCACGCAAGACCTGCCCGAGCCGCAGCCGTGGAATCTGCATGGGCAATTCACTAGCGTCACGCAGTGGCA
CCCCGCCTTCAGCGCGCGCTACAGCGGCCCCAACAGCCTGGCGCCCGCCAGCGAAGACCGCGCAACGACGGACCTGACCC
TGTTCCTCGGCGTGCGCCTGTGGAAGGGCGCCGAGCTGTATGCAAACCCGGAGATCGACCAGGGTTTCGGTCTGAACAAC
ACGCTGGGCATGGCCGGCTTTCCGAGCGCCGAAGCGTACAAGGTCGGCAAGAACGATCCGTACCACAAGCTGCCTCGCCT
CTTCCTGCGGCAGGTCATCGACCTCGGCGGCGCGCCGCAGGCGATGGAGTCGGCGCCCAACCAGCTCGGCGGGACCCGCG
CGGCGGACAACCTGACCCTCACCATCGGCAAGTTCTCGGTAATCGACATCTTCGACACCAATGCCTACGCGCACGATCCG
CGCGGGGATTTCCTGAACTGGTCCGTGGTCGATGCCGGCGCATTCGATTACGCGGCCGATGCCTGGGGCTATACCCATGG
CGCGGCGGTGGAATGGACCCAGTCGTGGTGGACGGTCCGCGGCGGCTTCTTCGCGCTGTCGAAGGTGCCGAACAGCGCGA
CGATCGACACGTCGTATAAGCAATACGCCTGGGTCGGCGAATTCGAAGCGCGCCATCAGTGGCTCGGGCGCCCCGGCAAG
GTCAAGCTGCTCGCCTTCGCCAACCGCGCCAGGATGGGTGGCTACGGCGATGCCCTGAGCCTCGCGCAGCAGACCGGGGA
CACCCCCGATACGTCCCTCGTCCGGCACCTCGCGTGGCGCGCCGGCATCGCGCTGAACGTGGAGCAGGAGCTGGCACCCG
ATCTCGGCTTCTTCGCCCGCGCCAGCATGAACGACGGCAGCAAGGAAACGTACGAGTTCACCGACATCAACCGGTCCGTC
TCCGCCGGCTTCTCGCTCAAGGGCGACCGCTGGGGCCGCCACGACGACACGGTGGGCGTGGCGGTCGTGGTCAACGGCCT
GTCACGCGCGGCGCGGCGGTATTTCGAGGCCGGCGGCCTGGGCGTGCTGATCGGCGACGGCGCGCTGAACTACGGCACGG
AGCGCATCGCCGAGCTGTACTACAACTGGGCCGCGATGCGGCACCTCACGCTCGGTCTCAACTACCAGTATGTGGTGCAC
CCCGCCTACAACCGGGATCGGGGCCCGGTGTCCATCGTGGGCCTGCGGGTTCACGCGGATTTCTGA

Upstream 100 bases:

>100_bases
GATCGAAGCGAGCGAGATTCATCGTTGGAAGCCATCCGGCAAGGTTGGGAAAAAATGCAACAGGGCCGACCCGATCGGCG
CGGTTTTCACGGGCAAATCG

Downstream 100 bases:

>100_bases
CGCGAAGGCGCCGGGCCGGGCTTCAGAGCTGGCGCCGGTCCAGCACCGCGCGGGCGATGGTGCCCGCGTCCACGTATTCC
AGCTCGCCGCCCACCGGCAC

Product: hypothetical protein

Products: NA

Alternate protein names: OmpA-Like Transmembrane Domain-Containing Protein; Carbohydrate-Selective Porin Oprb; OmpA-Like Transmembrane Domain Protein; OmpA Domain-Containing Protein; Outer Membrane Protein A-Like; Carbohydrate-Selective Porin

Number of amino acids: Translated: 501; Mature: 501

Protein sequence:

>501_residues
MRPVYHGGVSARPGTSLEFYRLPLSPSPMPLLFPRQIARPLPRHTERAAARRLRNTLAALALGLGLHGTALADPAAPNAP
EPAATQDLPEPQPWNLHGQFTSVTQWHPAFSARYSGPNSLAPASEDRATTDLTLFLGVRLWKGAELYANPEIDQGFGLNN
TLGMAGFPSAEAYKVGKNDPYHKLPRLFLRQVIDLGGAPQAMESAPNQLGGTRAADNLTLTIGKFSVIDIFDTNAYAHDP
RGDFLNWSVVDAGAFDYAADAWGYTHGAAVEWTQSWWTVRGGFFALSKVPNSATIDTSYKQYAWVGEFEARHQWLGRPGK
VKLLAFANRARMGGYGDALSLAQQTGDTPDTSLVRHLAWRAGIALNVEQELAPDLGFFARASMNDGSKETYEFTDINRSV
SAGFSLKGDRWGRHDDTVGVAVVVNGLSRAARRYFEAGGLGVLIGDGALNYGTERIAELYYNWAAMRHLTLGLNYQYVVH
PAYNRDRGPVSIVGLRVHADF

Sequences:

>Translated_501_residues
MRPVYHGGVSARPGTSLEFYRLPLSPSPMPLLFPRQIARPLPRHTERAAARRLRNTLAALALGLGLHGTALADPAAPNAP
EPAATQDLPEPQPWNLHGQFTSVTQWHPAFSARYSGPNSLAPASEDRATTDLTLFLGVRLWKGAELYANPEIDQGFGLNN
TLGMAGFPSAEAYKVGKNDPYHKLPRLFLRQVIDLGGAPQAMESAPNQLGGTRAADNLTLTIGKFSVIDIFDTNAYAHDP
RGDFLNWSVVDAGAFDYAADAWGYTHGAAVEWTQSWWTVRGGFFALSKVPNSATIDTSYKQYAWVGEFEARHQWLGRPGK
VKLLAFANRARMGGYGDALSLAQQTGDTPDTSLVRHLAWRAGIALNVEQELAPDLGFFARASMNDGSKETYEFTDINRSV
SAGFSLKGDRWGRHDDTVGVAVVVNGLSRAARRYFEAGGLGVLIGDGALNYGTERIAELYYNWAAMRHLTLGLNYQYVVH
PAYNRDRGPVSIVGLRVHADF
>Mature_501_residues
MRPVYHGGVSARPGTSLEFYRLPLSPSPMPLLFPRQIARPLPRHTERAAARRLRNTLAALALGLGLHGTALADPAAPNAP
EPAATQDLPEPQPWNLHGQFTSVTQWHPAFSARYSGPNSLAPASEDRATTDLTLFLGVRLWKGAELYANPEIDQGFGLNN
TLGMAGFPSAEAYKVGKNDPYHKLPRLFLRQVIDLGGAPQAMESAPNQLGGTRAADNLTLTIGKFSVIDIFDTNAYAHDP
RGDFLNWSVVDAGAFDYAADAWGYTHGAAVEWTQSWWTVRGGFFALSKVPNSATIDTSYKQYAWVGEFEARHQWLGRPGK
VKLLAFANRARMGGYGDALSLAQQTGDTPDTSLVRHLAWRAGIALNVEQELAPDLGFFARASMNDGSKETYEFTDINRSV
SAGFSLKGDRWGRHDDTVGVAVVVNGLSRAARRYFEAGGLGVLIGDGALNYGTERIAELYYNWAAMRHLTLGLNYQYVVH
PAYNRDRGPVSIVGLRVHADF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54741; Mature: 54741

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPVYHGGVSARPGTSLEFYRLPLSPSPMPLLFPRQIARPLPRHTERAAARRLRNTLAAL
CCCCCCCCCCCCCCCCEEEEECCCCCCCCCEECHHHHHCCCCCHHHHHHHHHHHHHHHHH
ALGLGLHGTALADPAAPNAPEPAATQDLPEPQPWNLHGQFTSVTQWHPAFSARYSGPNSL
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCHHCCCCCCCCC
APASEDRATTDLTLFLGVRLWKGAELYANPEIDQGFGLNNTLGMAGFPSAEAYKVGKNDP
CCCCCCCCCCEEEEEEEEEHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
YHKLPRLFLRQVIDLGGAPQAMESAPNQLGGTRAADNLTLTIGKFSVIDIFDTNAYAHDP
HHHHHHHHHHHHHHCCCCCHHHHHCCHHHCCCCCCCCEEEEECCEEEEEEEECCCCCCCC
RGDFLNWSVVDAGAFDYAADAWGYTHGAAVEWTQSWWTVRGGFFALSKVPNSATIDTSYK
CCCCEEEEEEECCCCCCHHHHCCCCCCCEEEEECCEEEECCCEEEEECCCCCCEECCCHH
QYAWVGEFEARHQWLGRPGKVKLLAFANRARMGGYGDALSLAQQTGDTPDTSLVRHLAWR
HEEEECCHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHH
AGIALNVEQELAPDLGFFARASMNDGSKETYEFTDINRSVSAGFSLKGDRWGRHDDTVGV
CCEEEEEHHHHCCCCCHHEECCCCCCCCCEEEEECCCCHHHCCCEECCCCCCCCCCCEEE
AVVVNGLSRAARRYFEAGGLGVLIGDGALNYGTERIAELYYNWAAMRHLTLGLNYQYVVH
EEEHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHEEECCCEEEEEE
PAYNRDRGPVSIVGLRVHADF
CCCCCCCCCEEEEEEEEEECC
>Mature Secondary Structure
MRPVYHGGVSARPGTSLEFYRLPLSPSPMPLLFPRQIARPLPRHTERAAARRLRNTLAAL
CCCCCCCCCCCCCCCCEEEEECCCCCCCCCEECHHHHHCCCCCHHHHHHHHHHHHHHHHH
ALGLGLHGTALADPAAPNAPEPAATQDLPEPQPWNLHGQFTSVTQWHPAFSARYSGPNSL
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCHHCCCCCCCCC
APASEDRATTDLTLFLGVRLWKGAELYANPEIDQGFGLNNTLGMAGFPSAEAYKVGKNDP
CCCCCCCCCCEEEEEEEEEHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
YHKLPRLFLRQVIDLGGAPQAMESAPNQLGGTRAADNLTLTIGKFSVIDIFDTNAYAHDP
HHHHHHHHHHHHHHCCCCCHHHHHCCHHHCCCCCCCCEEEEECCEEEEEEEECCCCCCCC
RGDFLNWSVVDAGAFDYAADAWGYTHGAAVEWTQSWWTVRGGFFALSKVPNSATIDTSYK
CCCCEEEEEEECCCCCCHHHHCCCCCCCEEEEECCEEEECCCEEEEECCCCCCEECCCHH
QYAWVGEFEARHQWLGRPGKVKLLAFANRARMGGYGDALSLAQQTGDTPDTSLVRHLAWR
HEEEECCHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHH
AGIALNVEQELAPDLGFFARASMNDGSKETYEFTDINRSVSAGFSLKGDRWGRHDDTVGV
CCEEEEEHHHHCCCCCHHEECCCCCCCCCEEEEECCCCHHHCCCEECCCCCCCCCCCEEE
AVVVNGLSRAARRYFEAGGLGVLIGDGALNYGTERIAELYYNWAAMRHLTLGLNYQYVVH
EEEHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHEEECCCEEEEEE
PAYNRDRGPVSIVGLRVHADF
CCCCCCCCCEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA