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The map label for this gene is ydcN [C]

Identifier: 17545878

GI number: 17545878

Start: 1218451

End: 1218999

Strand: Direct

Name: ydcN [C]

Synonym: RSc1159

Alternate gene names: 17545878

Gene position: 1218451-1218999 (Clockwise)

Preceding gene: 17545875

Following gene: 17545880

Centisome position: 32.79

GC content: 72.5

Gene sequence:

>549_bases
ATGACCGTCCGCCTCAAACCGCTGCGCAAGGATCGCGGCTGGACACTCGAAGTGCTGGCCGAACGCACCGGCCTGACCAA
GAGCTACCTGTCCAAGGTCGAGCGCGGCCTGTCCGTGCCGTCGATCGCCGTGGCGATGAAGCTGGCGGGAGCGCTCGGCG
TGCCCGCCGAAACCCTGTTCGGCGAACCCGCCGCCGCCTCGGCCATCACCGTGGTCCGCGCGGGCGAGCGCACCGCCGCG
GGCGCGCCCGGCGCGCAGCCGCGCTACGAGGGCATCGCGACCCAGCGCGGCGGCAAGGCGCTGCTGCCGTTCATGATCTA
CCCGCCGGCCGATTTCAGCGCCTCGCCGTTCAAGGAGCACGAGGGCGAGGAGATGCTGTTCGTGCATCGCGGCGAGGTCG
AGATCGCCTTCGCCGGGCAGACCGTGCGCCTGGCCGCGGGCGATGCGGTGGTGTTCGATGCGCGGATTCCGCATCGCACG
CGCTCGGTGGGGGAGGAGCCGGCGCAGGCGCTGGTGGTGGTGAGCGCCGCGCCGGCCGGCGCGCAATAA

Upstream 100 bases:

>100_bases
GTTTTCATGATCGGCACAGACGGAATGAGGGAATCCGCATTCTATGACACAGGGTGTCTTATGTGACAATTGTTCAAATA
GCCATGACACCCGTAGACCG

Downstream 100 bases:

>100_bases
AAAAGCCCGCGTTCCGGCGGGCTTCGTCGATCGGGCGTGGCGTGATCAGACCACGGCCTGCGAGCGCGAGAACGGCGTGG
TCAGCTTGATCATCTGCACG

Product: transcription regulator protein

Products: NA

Alternate protein names: Transcriptional Regulator; XRE Family Transcriptional Regulator; Regulatory Protein; Cupin 2 Domain-Containing Protein; MerR Family Transcriptional Regulator; Transcriptional Regulator XRE Family With Cupin Sensor; Helix-Turn-Helix Domain-Containing Protein; Cro/CI Family Transcriptional Regulator; Transcriptional Regulator MerR Family; Transcriptional Regulator HTH_3 Family; Transcriptional Regulator Protein; Cupin 2 Conserved Barrel Domain Protein; Helix-Turn-Helix Domain Protein; Transcriptional Regulator-Like Protein; Cupin 2 Conserved Barrel Domain-Containing Protein; Cupin Domain Protein; Helix-Turn-Helix Family; Transcriptional Regulatory Protein; Epoxidase; Transcriptional Regulator Merr Family; Helix-Turn-Helix Transcriptional Regulator; Helix-Turn-Helix Family Protein; Transcription Regulator Protein; Transcription Regulator; XRE Family-Like Protein; HTH_3family Transcriptional Regulator

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MTVRLKPLRKDRGWTLEVLAERTGLTKSYLSKVERGLSVPSIAVAMKLAGALGVPAETLFGEPAAASAITVVRAGERTAA
GAPGAQPRYEGIATQRGGKALLPFMIYPPADFSASPFKEHEGEEMLFVHRGEVEIAFAGQTVRLAAGDAVVFDARIPHRT
RSVGEEPAQALVVVSAAPAGAQ

Sequences:

>Translated_182_residues
MTVRLKPLRKDRGWTLEVLAERTGLTKSYLSKVERGLSVPSIAVAMKLAGALGVPAETLFGEPAAASAITVVRAGERTAA
GAPGAQPRYEGIATQRGGKALLPFMIYPPADFSASPFKEHEGEEMLFVHRGEVEIAFAGQTVRLAAGDAVVFDARIPHRT
RSVGEEPAQALVVVSAAPAGAQ
>Mature_181_residues
TVRLKPLRKDRGWTLEVLAERTGLTKSYLSKVERGLSVPSIAVAMKLAGALGVPAETLFGEPAAASAITVVRAGERTAAG
APGAQPRYEGIATQRGGKALLPFMIYPPADFSASPFKEHEGEEMLFVHRGEVEIAFAGQTVRLAAGDAVVFDARIPHRTR
SVGEEPAQALVVVSAAPAGAQ

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19131; Mature: 19000

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVRLKPLRKDRGWTLEVLAERTGLTKSYLSKVERGLSVPSIAVAMKLAGALGVPAETLF
CCEECCCCCCCCCCEEEEEHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHC
GEPAAASAITVVRAGERTAAGAPGAQPRYEGIATQRGGKALLPFMIYPPADFSASPFKEH
CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEEECCCCCCCCCCCCC
EGEEMLFVHRGEVEIAFAGQTVRLAAGDAVVFDARIPHRTRSVGEEPAQALVVVSAAPAG
CCCEEEEEECCCEEEEECCCEEEEECCCEEEEECCCCCHHHHCCCCCCEEEEEEECCCCC
AQ
CC
>Mature Secondary Structure 
TVRLKPLRKDRGWTLEVLAERTGLTKSYLSKVERGLSVPSIAVAMKLAGALGVPAETLF
CEECCCCCCCCCCEEEEEHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHC
GEPAAASAITVVRAGERTAAGAPGAQPRYEGIATQRGGKALLPFMIYPPADFSASPFKEH
CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEEECCCCCCCCCCCCC
EGEEMLFVHRGEVEIAFAGQTVRLAAGDAVVFDARIPHRTRSVGEEPAQALVVVSAAPAG
CCCEEEEEECCCEEEEECCCEEEEECCCEEEEECCCCCHHHHCCCCCCEEEEEEECCCCC
AQ
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA