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The map label for this gene is ytbD [H]

Identifier: 17545872

GI number: 17545872

Start: 1210966

End: 1212168

Strand: Direct

Name: ytbD [H]

Synonym: RSc1153

Alternate gene names: 17545872

Gene position: 1210966-1212168 (Clockwise)

Preceding gene: 17545868

Following gene: 17545873

Centisome position: 32.58

GC content: 71.4

Gene sequence:

>1203_bases
ATGCCGATTGCTTTGCTTGCGCTCACGCTGAGCGCGTTCGCCATCGGGACGACCGAGTTCGTCATCGTTGGCCTGATCCC
GACGGTGGCGGCCGATCTCGGCATCACGCTGCCGTCGGCCGGATGGCTGGTCAGCCTGTATGCGCTGGGTGTGGCGGTCG
GCGCCCCGGTGCTCACGGCGCTGACGGGGCGGCTGCCGCGCAAGGCGCTGCTGCTGGCGCTGATGGCGCTGTTCACGCTC
GGCAACCTGCTGGCGTGGCGCGCGCCGGGCTATGCGCCGCTGGTGCTGGCGCGCGTGATGACGGGGCTGGCGCACGGCGT
GTTCTTTTCGATCGGCTCGACGCTCGCCACCAGCCTGGTGCCCAGGGAGAAGGCCGCGAGCGCCATCGCCATCATGTTCA
CGGGCCTGACGGTGGCGCTGGTGACGGGCGTGCCGCTGGGCACGTTCATCGGCCAGCACTTCGGCTGGCGCGAGACGTTC
CTGGCGGTGGCCGGGCTGGGTGTGATCGCCTTCGTCGGCAGCCTGGTGTTCGTGCCGCGCGACATCGCGCATGCGCCGCC
GGCGTCGCTGGCCAGGCAACTGCAGGTGCTGGCGCAGCCGCGCCTGCTGATGGTCTACGCGAAGACGGCCATCGGCTACG
GCGGCTCGTTCATCCCTTTTACCTTCCTGGCGCCGATCCTGCAGGACGTGGCCGGCTTCAGCGCCGGGGCGGTGGGCTGG
GTGATGCTGGTGTACGGCGTGTCGGTGGCGGCGGGGAACCTTTGGGGCGGCCGGCTGGCCGATCGCAAGGGGCCGATCGC
GGCGCTGCAGGTCATCTTCGCGCTGCTCGCGGCGGTGCTGTTCGCCTTCACGTTCACCGCGCGGTATCCGTGGACGGCGG
TGGCGACGGTGCTGCTGTGGGGCGCGGTGGCGTTCGGCAATGTGCCGGGGCTGCAGGCCTACGTGGTCAAGCAGGCGGAG
CGCTTCGCGCCGCAGGCCGTGGACGTGGCGTCGGGCCTGAACATTGCCGCGTTCAACCTGGGCATTGCCGGGGCGGCATG
GGCCGGCGGCTGGATCGTGACGCACCTGGGCCTGATGCATACGCCCTGGATCGGCGCGCTGGTGGTGCTGGTCTCGCTGG
GCCTGACCGCCTGGAGCGGAGCGCTGGATCGCCGCGGCGGCATCGGCCCGCGCCTGGATGGCCCGGCCCCGGTGGGGCAT
TGA

Upstream 100 bases:

>100_bases
CAGATTATCAATTTTTAGTCAAAAGTATTCTGCCCAATACGGGGTTTTTTGCAAAGGCGAGCGCCCTGACACTCCGTCCG
TCTGCATCACGGAGGGCACC

Downstream 100 bases:

>100_bases
GACGGATTCAACATCGAACACAAGGGAACGCCATGAACGACACTTTCACGATGCCCGCTTTCGGCCTCGGTACCTTCCGC
CTGACGGGCGAGGCCGCGAT

Product: transmembrane efflux transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 399

Protein sequence:

>400_residues
MPIALLALTLSAFAIGTTEFVIVGLIPTVAADLGITLPSAGWLVSLYALGVAVGAPVLTALTGRLPRKALLLALMALFTL
GNLLAWRAPGYAPLVLARVMTGLAHGVFFSIGSTLATSLVPREKAASAIAIMFTGLTVALVTGVPLGTFIGQHFGWRETF
LAVAGLGVIAFVGSLVFVPRDIAHAPPASLARQLQVLAQPRLLMVYAKTAIGYGGSFIPFTFLAPILQDVAGFSAGAVGW
VMLVYGVSVAAGNLWGGRLADRKGPIAALQVIFALLAAVLFAFTFTARYPWTAVATVLLWGAVAFGNVPGLQAYVVKQAE
RFAPQAVDVASGLNIAAFNLGIAGAAWAGGWIVTHLGLMHTPWIGALVVLVSLGLTAWSGALDRRGGIGPRLDGPAPVGH

Sequences:

>Translated_400_residues
MPIALLALTLSAFAIGTTEFVIVGLIPTVAADLGITLPSAGWLVSLYALGVAVGAPVLTALTGRLPRKALLLALMALFTL
GNLLAWRAPGYAPLVLARVMTGLAHGVFFSIGSTLATSLVPREKAASAIAIMFTGLTVALVTGVPLGTFIGQHFGWRETF
LAVAGLGVIAFVGSLVFVPRDIAHAPPASLARQLQVLAQPRLLMVYAKTAIGYGGSFIPFTFLAPILQDVAGFSAGAVGW
VMLVYGVSVAAGNLWGGRLADRKGPIAALQVIFALLAAVLFAFTFTARYPWTAVATVLLWGAVAFGNVPGLQAYVVKQAE
RFAPQAVDVASGLNIAAFNLGIAGAAWAGGWIVTHLGLMHTPWIGALVVLVSLGLTAWSGALDRRGGIGPRLDGPAPVGH
>Mature_399_residues
PIALLALTLSAFAIGTTEFVIVGLIPTVAADLGITLPSAGWLVSLYALGVAVGAPVLTALTGRLPRKALLLALMALFTLG
NLLAWRAPGYAPLVLARVMTGLAHGVFFSIGSTLATSLVPREKAASAIAIMFTGLTVALVTGVPLGTFIGQHFGWRETFL
AVAGLGVIAFVGSLVFVPRDIAHAPPASLARQLQVLAQPRLLMVYAKTAIGYGGSFIPFTFLAPILQDVAGFSAGAVGWV
MLVYGVSVAAGNLWGGRLADRKGPIAALQVIFALLAAVLFAFTFTARYPWTAVATVLLWGAVAFGNVPGLQAYVVKQAER
FAPQAVDVASGLNIAAFNLGIAGAAWAGGWIVTHLGLMHTPWIGALVVLVSLGLTAWSGALDRRGGIGPRLDGPAPVGH

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=365, Percent_Identity=42.7397260273973, Blast_Score=240, Evalue=1e-64,
Organism=Escherichia coli, GI1786595, Length=361, Percent_Identity=32.1329639889197, Blast_Score=180, Evalue=2e-46,
Organism=Escherichia coli, GI1787808, Length=381, Percent_Identity=27.8215223097113, Blast_Score=125, Evalue=6e-30,
Organism=Escherichia coli, GI145693198, Length=367, Percent_Identity=27.7929155313352, Blast_Score=103, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41229; Mature: 41098

Theoretical pI: Translated: 10.86; Mature: 10.86

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIALLALTLSAFAIGTTEFVIVGLIPTVAADLGITLPSAGWLVSLYALGVAVGAPVLTA
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
LTGRLPRKALLLALMALFTLGNLLAWRAPGYAPLVLARVMTGLAHGVFFSIGSTLATSLV
HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PREKAASAIAIMFTGLTVALVTGVPLGTFIGQHFGWRETFLAVAGLGVIAFVGSLVFVPR
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCH
DIAHAPPASLARQLQVLAQPRLLMVYAKTAIGYGGSFIPFTFLAPILQDVAGFSAGAVGW
HHCCCCHHHHHHHHHHHHCCCEEEEEEHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHH
VMLVYGVSVAAGNLWGGRLADRKGPIAALQVIFALLAAVLFAFTFTARYPWTAVATVLLW
HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
GAVAFGNVPGLQAYVVKQAERFAPQAVDVASGLNIAAFNLGIAGAAWAGGWIVTHLGLMH
HHHHHCCCCCHHHHHHHHHHHHCCHHHHHHCCCCEEEEECCCCCHHHHCHHHHHHHHHHH
TPWIGALVVLVSLGLTAWSGALDRRGGIGPRLDGPAPVGH
CCHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PIALLALTLSAFAIGTTEFVIVGLIPTVAADLGITLPSAGWLVSLYALGVAVGAPVLTA
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
LTGRLPRKALLLALMALFTLGNLLAWRAPGYAPLVLARVMTGLAHGVFFSIGSTLATSLV
HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PREKAASAIAIMFTGLTVALVTGVPLGTFIGQHFGWRETFLAVAGLGVIAFVGSLVFVPR
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCH
DIAHAPPASLARQLQVLAQPRLLMVYAKTAIGYGGSFIPFTFLAPILQDVAGFSAGAVGW
HHCCCCHHHHHHHHHHHHCCCEEEEEEHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHH
VMLVYGVSVAAGNLWGGRLADRKGPIAALQVIFALLAAVLFAFTFTARYPWTAVATVLLW
HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
GAVAFGNVPGLQAYVVKQAERFAPQAVDVASGLNIAAFNLGIAGAAWAGGWIVTHLGLMH
HHHHHCCCCCHHHHHHHHHHHHCCHHHHHHCCCCEEEEECCCCCHHHHCHHHHHHHHHHH
TPWIGALVVLVSLGLTAWSGALDRRGGIGPRLDGPAPVGH
CCHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]