| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is 17545854
Identifier: 17545854
GI number: 17545854
Start: 1192363
End: 1193286
Strand: Direct
Name: 17545854
Synonym: RSc1135
Alternate gene names: NA
Gene position: 1192363-1193286 (Clockwise)
Preceding gene: 17545853
Following gene: 17545859
Centisome position: 32.08
GC content: 69.7
Gene sequence:
>924_bases ATGGACTCCACCACCCCCACGCTACCGGCCGCGCGTCTGGCTTCCCGCTCGACCTATCTGCCCGTGCGCGGCTTGCGCTA CCACATCCGCGAATGGGGCGAGCCGGGCGCGCCGATCCTGTTCCTGTTCCACGGGTGGATGGATGTGTCGGCCTCGTTCC AGTTCCTGGTGGAGGCGTTGCGCGAGCGCTGGCATGTCGTCGCGCCGGACTGGCGCGGCTACGGCCTGACCGCGTGGGCG ACCGACGCGCCCGGTGTCGATTCGTACTGGTTCGCCGATTACCTGGCCGACCTGGAGGCCATCGTCGATCACTATCAGCC GGATGGCCAGGTCACTCTGGTCGGCCACAGCCTGGGCGCCAACGTGGTGTGCCTCTACGCCGGCGTGCGGCCCGAGCGCG TGCGCCGCGTGGTCGACCTGGAAGGCTTCGGCATGCCCGCGTCCAGGCCGTCGCAGGCCGCGCGCCGCTATGCACGCTGG CTCGACGAACTGAAGGACAAGCCGCGCCTGATCACCTATGCCACCCTCGACGACGTGGCCGCCCGGCTGCAGAAGACCAA CCCGCGCCTGCCGGCCGACAAGGCGGCCTTCCTGGCGCGGCACTGGTCGCGCCAGAACGCGGACGGCCGCTGGGAAATCC TCGGCGATCCCGCCCACAAGATCGTCAACCCGCAGCTGTACCGGCTCGATGAGGTGATGGAGATCTGGCGCCGCGTGGCC GCGCCCGTGCTGCACGTCGAGGCGGTCGATTCTCCGACGCTGATCGCGCTGGCGGGCGACGTGCCGCTGCCCGAGTTCAG GTCGCGCTTCGCGGCGTTCCCGGATTTGCGCGAAGCGAGGATCACCGATGCGGGCCACATGCTGCATCATGACCAGCCGG AGCAGGTGGCGGCACTGGTGGAGGCCTTCTGCAAGGCGGCGTGA
Upstream 100 bases:
>100_bases GCGCTCGAGGCCAGCTTCTAAGCCGCGCGCGCCGGGCGGGGCACCGGTATAATCGCCAGAAAAACGAACGACCGTTCGAT TCCTTCCCGGCGAGGCAACC
Downstream 100 bases:
>100_bases GCGTGGCCGTTCAGTCGAGAAACCGCTGTGCCGCACCGGGCGGCGGCAGGATGCAGGTGTCCGAGCAGCCGAACCAGCGA TAGCGGTTGCGCGCCACGCA
Product: hydrolase
Products: NA
Alternate protein names: Hydrolase; Alpha/Beta Hydrolase Fold Protein; Alpha/Beta Fold Family Hydrolase; Alpha/Beta Hydrolase; Hydrolase Alpha/Beta Fold Family; Hydrolase Protein; Hydrolase/Acyltransferase; Beta-Ketoacyl Synthase; Haloalkane Dehalogenase; Esterase; Lipase A; Hydrolases Or Acyltransferases; Hydrolase Or Acytransferase; Alpha/Beta Hydrolase Fold Family; Alpha/Beta Hydrolase Superfamily Protein; Lipase LipA; Hydrolase Or Acyltransferase; Hydrolase Or Acetyltransferase; Polyketide Synthase; Alpha/Beta Superfamily Hydrolase/Acyltransferase
Number of amino acids: Translated: 307; Mature: 307
Protein sequence:
>307_residues MDSTTPTLPAARLASRSTYLPVRGLRYHIREWGEPGAPILFLFHGWMDVSASFQFLVEALRERWHVVAPDWRGYGLTAWA TDAPGVDSYWFADYLADLEAIVDHYQPDGQVTLVGHSLGANVVCLYAGVRPERVRRVVDLEGFGMPASRPSQAARRYARW LDELKDKPRLITYATLDDVAARLQKTNPRLPADKAAFLARHWSRQNADGRWEILGDPAHKIVNPQLYRLDEVMEIWRRVA APVLHVEAVDSPTLIALAGDVPLPEFRSRFAAFPDLREARITDAGHMLHHDQPEQVAALVEAFCKAA
Sequences:
>Translated_307_residues MDSTTPTLPAARLASRSTYLPVRGLRYHIREWGEPGAPILFLFHGWMDVSASFQFLVEALRERWHVVAPDWRGYGLTAWA TDAPGVDSYWFADYLADLEAIVDHYQPDGQVTLVGHSLGANVVCLYAGVRPERVRRVVDLEGFGMPASRPSQAARRYARW LDELKDKPRLITYATLDDVAARLQKTNPRLPADKAAFLARHWSRQNADGRWEILGDPAHKIVNPQLYRLDEVMEIWRRVA APVLHVEAVDSPTLIALAGDVPLPEFRSRFAAFPDLREARITDAGHMLHHDQPEQVAALVEAFCKAA >Mature_307_residues MDSTTPTLPAARLASRSTYLPVRGLRYHIREWGEPGAPILFLFHGWMDVSASFQFLVEALRERWHVVAPDWRGYGLTAWA TDAPGVDSYWFADYLADLEAIVDHYQPDGQVTLVGHSLGANVVCLYAGVRPERVRRVVDLEGFGMPASRPSQAARRYARW LDELKDKPRLITYATLDDVAARLQKTNPRLPADKAAFLARHWSRQNADGRWEILGDPAHKIVNPQLYRLDEVMEIWRRVA APVLHVEAVDSPTLIALAGDVPLPEFRSRFAAFPDLREARITDAGHMLHHDQPEQVAALVEAFCKAA
Specific function: Unknown
COG id: COG0596
COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34591; Mature: 34591
Theoretical pI: Translated: 6.75; Mature: 6.75
Prosite motif: PS00120 LIPASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDSTTPTLPAARLASRSTYLPVRGLRYHIREWGEPGAPILFLFHGWMDVSASFQFLVEAL CCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHH RERWHVVAPDWRGYGLTAWATDAPGVDSYWFADYLADLEAIVDHYQPDGQVTLVGHSLGA HHCCEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC NVVCLYAGVRPERVRRVVDLEGFGMPASRPSQAARRYARWLDELKDKPRLITYATLDDVA CEEEEEECCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHH ARLQKTNPRLPADKAAFLARHWSRQNADGRWEILGDPAHKIVNPQLYRLDEVMEIWRRVA HHHHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCHHHHCCCHHHHHHHHHHHHHHHH APVLHVEAVDSPTLIALAGDVPLPEFRSRFAAFPDLREARITDAGHMLHHDQPEQVAALV CCEEEEEECCCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHCCCHHHHCCCCHHHHHHHH EAFCKAA HHHHCCC >Mature Secondary Structure MDSTTPTLPAARLASRSTYLPVRGLRYHIREWGEPGAPILFLFHGWMDVSASFQFLVEAL CCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHH RERWHVVAPDWRGYGLTAWATDAPGVDSYWFADYLADLEAIVDHYQPDGQVTLVGHSLGA HHCCEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC NVVCLYAGVRPERVRRVVDLEGFGMPASRPSQAARRYARWLDELKDKPRLITYATLDDVA CEEEEEECCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHH ARLQKTNPRLPADKAAFLARHWSRQNADGRWEILGDPAHKIVNPQLYRLDEVMEIWRRVA HHHHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCHHHHCCCHHHHHHHHHHHHHHHH APVLHVEAVDSPTLIALAGDVPLPEFRSRFAAFPDLREARITDAGHMLHHDQPEQVAALV CCEEEEEECCCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHCCCHHHHCCCCHHHHHHHH EAFCKAA HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA