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The map label for this gene is yqhC [H]

Identifier: 17545344

GI number: 17545344

Start: 672486

End: 673451

Strand: Direct

Name: yqhC [H]

Synonym: RSc0625

Alternate gene names: 17545344

Gene position: 672486-673451 (Clockwise)

Preceding gene: 17545340

Following gene: 17545345

Centisome position: 18.1

GC content: 61.08

Gene sequence:

>966_bases
ATGGACTCCTCGGGCAGCACACAGCAACACGGCAGCACGCACGTCGCGGCATTGCATGAAGCACTGGCACAGTCCATCGG
GCGATGGACCGAGGGGCTGGAAGACTGTTCAACATCGATCCCCAACCTGGGGCTTTTCCGGCGGGACACTGCCGTGGAGC
CGTGCGTATGCCTGGTGGAGCCCAGTGTTGTTCTGGTTGCTCAGGGCGCCAAGCAACTACAGGTGGGTGATGAGGCATAC
ACCTATGACATTGAGCGTTTTCTGGTCACATCGCTGGATATGCCCGCCGTTTCGCGCGTATTGGATGCCAGCCCGGAGAG
GCCATGCCTGGGGCTGGTGTTCAAGCTCGACTTGCGGATCACCGCGGAGCTGATCGCACAGAGCGGCCTGCCGCCACCGA
CCGAGCCCGCTGCAGAACGAGGCATGGCGCTGGGTACCCTCACGCCGCTCCTGCTGGAGCCGCTGAAGCGATTGGTTGAT
TTGCTGGACGAGCCGGAGGCCGTTCCGGTACTTGCGCCGCTCATCCAGCGTGAAATTCATTTCCGCCTGCTGATGAGTGA
CCAGGCGACACGCCTGTGGCAGATCGCGTCGGCAGGCAGCCAGGGACACCGGATTGCCACGGCAATAGACTGGCTGAAGG
TGAATTTCGCCCTGCCGCTTCGAATCGACGAACTTGCAGCGCGGGTACAAATGAGTACCTCTAGCCTCCATCACCATTTC
CGTCAGCTCACCACCATGAGCCCGCTGCAGTATCAGAAATGGCTGCGGCTAAACGAGGCACGGCGCCTGATGCTCAATGA
GCATCTGGATGCGGCAACGGCCGCCTTCCGCGTCGGCTACGAAAGTCCTTCGCAGTTCAGTCGCGAATACAGTCGCCTGT
TTGGTCAGCCGCCCAAGCGTGATATTGAGGGACTGCTTCGCAAGGCCGAGGACGCGAGCTATTCGCAAGCGGTGGCCAAC
GCCTAA

Upstream 100 bases:

>100_bases
TCGGGGATCTTCTTGCCTGATCCTCCATTGCCCCGGACTACCATGGTCAACCAAGGCACGCCATGAATTACCATCGCACC
AGATAGGTTTGGAGGTTCAG

Downstream 100 bases:

>100_bases
GCCCCGATGCTGTTGGAGAATCGGGCAAGAAAGCTGGAGGATCGAGCTATCGAGTTTGCCAGGTGGATCCGCAGAATGCG
TGACGGCATTCCTCTGCCCG

Product: transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MDSSGSTQQHGSTHVAALHEALAQSIGRWTEGLEDCSTSIPNLGLFRRDTAVEPCVCLVEPSVVLVAQGAKQLQVGDEAY
TYDIERFLVTSLDMPAVSRVLDASPERPCLGLVFKLDLRITAELIAQSGLPPPTEPAAERGMALGTLTPLLLEPLKRLVD
LLDEPEAVPVLAPLIQREIHFRLLMSDQATRLWQIASAGSQGHRIATAIDWLKVNFALPLRIDELAARVQMSTSSLHHHF
RQLTTMSPLQYQKWLRLNEARRLMLNEHLDAATAAFRVGYESPSQFSREYSRLFGQPPKRDIEGLLRKAEDASYSQAVAN
A

Sequences:

>Translated_321_residues
MDSSGSTQQHGSTHVAALHEALAQSIGRWTEGLEDCSTSIPNLGLFRRDTAVEPCVCLVEPSVVLVAQGAKQLQVGDEAY
TYDIERFLVTSLDMPAVSRVLDASPERPCLGLVFKLDLRITAELIAQSGLPPPTEPAAERGMALGTLTPLLLEPLKRLVD
LLDEPEAVPVLAPLIQREIHFRLLMSDQATRLWQIASAGSQGHRIATAIDWLKVNFALPLRIDELAARVQMSTSSLHHHF
RQLTTMSPLQYQKWLRLNEARRLMLNEHLDAATAAFRVGYESPSQFSREYSRLFGQPPKRDIEGLLRKAEDASYSQAVAN
A
>Mature_321_residues
MDSSGSTQQHGSTHVAALHEALAQSIGRWTEGLEDCSTSIPNLGLFRRDTAVEPCVCLVEPSVVLVAQGAKQLQVGDEAY
TYDIERFLVTSLDMPAVSRVLDASPERPCLGLVFKLDLRITAELIAQSGLPPPTEPAAERGMALGTLTPLLLEPLKRLVD
LLDEPEAVPVLAPLIQREIHFRLLMSDQATRLWQIASAGSQGHRIATAIDWLKVNFALPLRIDELAARVQMSTSSLHHHF
RQLTTMSPLQYQKWLRLNEARRLMLNEHLDAATAAFRVGYESPSQFSREYSRLFGQPPKRDIEGLLRKAEDASYSQAVAN
A

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=281, Percent_Identity=29.5373665480427, Blast_Score=136, Evalue=1e-33,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35522; Mature: 35522

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSSGSTQQHGSTHVAALHEALAQSIGRWTEGLEDCSTSIPNLGLFRRDTAVEPCVCLVE
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC
PSVVLVAQGAKQLQVGDEAYTYDIERFLVTSLDMPAVSRVLDASPERPCLGLVFKLDLRI
CCEEEEECCCHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEEEEEHHHH
TAELIAQSGLPPPTEPAAERGMALGTLTPLLLEPLKRLVDLLDEPEAVPVLAPLIQREIH
HHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
FRLLMSDQATRLWQIASAGSQGHRIATAIDWLKVNFALPLRIDELAARVQMSTSSLHHHF
HHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHH
RQLTTMSPLQYQKWLRLNEARRLMLNEHLDAATAAFRVGYESPSQFSREYSRLFGQPPKR
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH
DIEGLLRKAEDASYSQAVANA
HHHHHHHHHCCCHHHHHHHCC
>Mature Secondary Structure
MDSSGSTQQHGSTHVAALHEALAQSIGRWTEGLEDCSTSIPNLGLFRRDTAVEPCVCLVE
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC
PSVVLVAQGAKQLQVGDEAYTYDIERFLVTSLDMPAVSRVLDASPERPCLGLVFKLDLRI
CCEEEEECCCHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEEEEEHHHH
TAELIAQSGLPPPTEPAAERGMALGTLTPLLLEPLKRLVDLLDEPEAVPVLAPLIQREIH
HHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
FRLLMSDQATRLWQIASAGSQGHRIATAIDWLKVNFALPLRIDELAARVQMSTSSLHHHF
HHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHH
RQLTTMSPLQYQKWLRLNEARRLMLNEHLDAATAAFRVGYESPSQFSREYSRLFGQPPKR
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH
DIEGLLRKAEDASYSQAVANA
HHHHHHHHHCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]