| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is purK [H]
Identifier: 17545295
GI number: 17545295
Start: 619859
End: 621100
Strand: Direct
Name: purK [H]
Synonym: RSc0576
Alternate gene names: 17545295
Gene position: 619859-621100 (Clockwise)
Preceding gene: 17545294
Following gene: 17545296
Centisome position: 16.68
GC content: 70.21
Gene sequence:
>1242_bases ATGGCCGACGACCTGAATCCGCGCCTCGCGCAGGCCCACACGCCCGAATCCCGCGCGCTGAACGTTCCCGACGCGATCCT GCCCGACAGCTGGCTGGGCATGCTCGGCGGCGGCCAGCTCGGCCGCATGTTCACGCACGCCGCACAGGCGATGGGCTACA AGGTGTGCGTGCTGGACCCCGACCCGAACAGCCCCGCCGGCACCGTCGCCGAGCGCCACCTGTGCGCGGCCTACACGGAT GAGGCCGCGCTGGCCGAGCTGGCCGCGCTGTGCCCGGCGGTCACCACCGAATTCGAGAACGTGCCGGCACAGGCGCTCGA CCGCCTCGAGCACCTCGGCGCCTTCGTCGCGCCGCGCGCCCACTGCGTGTCGATCGCGCAGAACCGCATCGCCGAGAAGA AATTCTTTGCGCTGTGCGCCGCCCGCACCGGCATCCACCCGGCGCCGAGCTGGGTGATCGAGCACGACGCCGACATCGAC CAGCTGCCGGCCGACCTGCTGCCCGGCATCCTGAAGATCGCCCGCATGGGCTACGACGGCAAGGGCCAGGCGCGCGTCTC CACGGTCGGCGAGCTGCGCGCGGCCTGGGGCGCGATGCAGCACGTGCCGTGCGTGCTGGAGAAGATGCTGCCGCTGGCCT ACGAAGTGTCCGTGCTGGCCGCCCGCGCCGCCGACGGCAGCACCGTTACCTGGCCGCTGGCCGAGAACATTCACCGCGAC GGCATCCTGTTCTCCACGGTCATGCCCTCGCGCAGCGTGTCGGACGACATCGCCACGCGCACCCGCGCCGCCGCCGCAAT GATCACCGAGGAGATGGGCTACGTGGGCGTGCTGTGCATCGAGTTCTTCGTGCTGCAGGACGGTTCGCTGATCGCCAACG AGATGGCGCCGCGCCCGCACAACTCGGGCCATATCACTATGGATGTGTGCGAGACCAGCCAGTTCGAGCAGCAGGTGCGT ACCATGGCCCGCCTGCCGCTGGGCAGCACGCGCCAGCATTCGCCGGGGCGCATGCTCAACGTGCTGGGCGACGTGTGGTT CGAGTACGGCCTGGAACGCACGCCCGCGTGGCACGATGTGATGCGGCATTCCGGCACCAAGGTGCACCTGTACGGCAAGG CCGACGCGCGTCCGGGCCGCAAGATGGGCCATGTCAATTGCGTCGGCACGTCGCCCGAGGTGGCGGACGAGGCGTTCCAC CATGCCGTGCAGGTGCTCGGCCTGCAATCGGCCCCGGCCTGA
Upstream 100 bases:
>100_bases CTGGCGGCCAAGCTCGAAGCCTTCCGCGCCCGGCAGACCGAAGTGGCGCGCGGCATGACGCTGCCCGTGCACAGTGCTTA AGTCCTTCGCCCAACCGCCC
Downstream 100 bases:
>100_bases CGGCCGCCACATCCGAAGCCATGCACAAGTCGACCACGCCCTTCGTCATGCCTCCCGCCGCGCGCCTCGATGAGGCCGCG CGCCGGCTGGAAGCGGGCGA
Product: phosphoribosylaminoimidazole carboxylase ATPase subunit
Products: NA
Alternate protein names: N5-CAIR synthase; 5-(carboxyamino)imidazole ribonucleotide synthetase [H]
Number of amino acids: Translated: 413; Mature: 412
Protein sequence:
>413_residues MADDLNPRLAQAHTPESRALNVPDAILPDSWLGMLGGGQLGRMFTHAAQAMGYKVCVLDPDPNSPAGTVAERHLCAAYTD EAALAELAALCPAVTTEFENVPAQALDRLEHLGAFVAPRAHCVSIAQNRIAEKKFFALCAARTGIHPAPSWVIEHDADID QLPADLLPGILKIARMGYDGKGQARVSTVGELRAAWGAMQHVPCVLEKMLPLAYEVSVLAARAADGSTVTWPLAENIHRD GILFSTVMPSRSVSDDIATRTRAAAAMITEEMGYVGVLCIEFFVLQDGSLIANEMAPRPHNSGHITMDVCETSQFEQQVR TMARLPLGSTRQHSPGRMLNVLGDVWFEYGLERTPAWHDVMRHSGTKVHLYGKADARPGRKMGHVNCVGTSPEVADEAFH HAVQVLGLQSAPA
Sequences:
>Translated_413_residues MADDLNPRLAQAHTPESRALNVPDAILPDSWLGMLGGGQLGRMFTHAAQAMGYKVCVLDPDPNSPAGTVAERHLCAAYTD EAALAELAALCPAVTTEFENVPAQALDRLEHLGAFVAPRAHCVSIAQNRIAEKKFFALCAARTGIHPAPSWVIEHDADID QLPADLLPGILKIARMGYDGKGQARVSTVGELRAAWGAMQHVPCVLEKMLPLAYEVSVLAARAADGSTVTWPLAENIHRD GILFSTVMPSRSVSDDIATRTRAAAAMITEEMGYVGVLCIEFFVLQDGSLIANEMAPRPHNSGHITMDVCETSQFEQQVR TMARLPLGSTRQHSPGRMLNVLGDVWFEYGLERTPAWHDVMRHSGTKVHLYGKADARPGRKMGHVNCVGTSPEVADEAFH HAVQVLGLQSAPA >Mature_412_residues ADDLNPRLAQAHTPESRALNVPDAILPDSWLGMLGGGQLGRMFTHAAQAMGYKVCVLDPDPNSPAGTVAERHLCAAYTDE AALAELAALCPAVTTEFENVPAQALDRLEHLGAFVAPRAHCVSIAQNRIAEKKFFALCAARTGIHPAPSWVIEHDADIDQ LPADLLPGILKIARMGYDGKGQARVSTVGELRAAWGAMQHVPCVLEKMLPLAYEVSVLAARAADGSTVTWPLAENIHRDG ILFSTVMPSRSVSDDIATRTRAAAAMITEEMGYVGVLCIEFFVLQDGSLIANEMAPRPHNSGHITMDVCETSQFEQQVRT MARLPLGSTRQHSPGRMLNVLGDVWFEYGLERTPAWHDVMRHSGTKVHLYGKADARPGRKMGHVNCVGTSPEVADEAFHH AVQVLGLQSAPA
Specific function: Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) [H]
COG id: COG0026
COG function: function code F; Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ATP-grasp domain [H]
Homologues:
Organism=Escherichia coli, GI1786733, Length=367, Percent_Identity=34.8773841961853, Blast_Score=143, Evalue=2e-35, Organism=Escherichia coli, GI1788155, Length=386, Percent_Identity=25.3886010362694, Blast_Score=96, Evalue=6e-21, Organism=Saccharomyces cerevisiae, GI6324702, Length=372, Percent_Identity=31.4516129032258, Blast_Score=187, Evalue=3e-48,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005875 - InterPro: IPR011761 - InterPro: IPR003135 - InterPro: IPR013816 - InterPro: IPR013817 - InterPro: IPR016185 - InterPro: IPR011054 [H]
Pfam domain/function: PF02222 ATP-grasp [H]
EC number: =6.3.4.18 [H]
Molecular weight: Translated: 44581; Mature: 44450
Theoretical pI: Translated: 6.22; Mature: 6.22
Prosite motif: PS50975 ATP_GRASP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADDLNPRLAQAHTPESRALNVPDAILPDSWLGMLGGGQLGRMFTHAAQAMGYKVCVLDP CCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCEEEEECC DPNSPAGTVAERHLCAAYTDEAALAELAALCPAVTTEFENVPAQALDRLEHLGAFVAPRA CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHH HCVSIAQNRIAEKKFFALCAARTGIHPAPSWVIEHDADIDQLPADLLPGILKIARMGYDG HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHCCHHHHHHHHHHHHCCCCC KGQARVSTVGELRAAWGAMQHVPCVLEKMLPLAYEVSVLAARAADGSTVTWPLAENIHRD CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHCCCCC GILFSTVMPSRSVSDDIATRTRAAAAMITEEMGYVGVLCIEFFVLQDGSLIANEMAPRPH CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHCCCCCC NSGHITMDVCETSQFEQQVRTMARLPLGSTRQHSPGRMLNVLGDVWFEYGLERTPAWHDV CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHH MRHSGTKVHLYGKADARPGRKMGHVNCVGTSPEVADEAFHHAVQVLGLQSAPA HHCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure ADDLNPRLAQAHTPESRALNVPDAILPDSWLGMLGGGQLGRMFTHAAQAMGYKVCVLDP CCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCEEEEECC DPNSPAGTVAERHLCAAYTDEAALAELAALCPAVTTEFENVPAQALDRLEHLGAFVAPRA CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHH HCVSIAQNRIAEKKFFALCAARTGIHPAPSWVIEHDADIDQLPADLLPGILKIARMGYDG HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHCCHHHHHHHHHHHHCCCCC KGQARVSTVGELRAAWGAMQHVPCVLEKMLPLAYEVSVLAARAADGSTVTWPLAENIHRD CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHCCCCC GILFSTVMPSRSVSDDIATRTRAAAAMITEEMGYVGVLCIEFFVLQDGSLIANEMAPRPH CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHCCCCCC NSGHITMDVCETSQFEQQVRTMARLPLGSTRQHSPGRMLNVLGDVWFEYGLERTPAWHDV CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHH MRHSGTKVHLYGKADARPGRKMGHVNCVGTSPEVADEAFHHAVQVLGLQSAPA HHCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11756688 [H]