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The map label for this gene is mmgC [H]

Identifier: 17544993

GI number: 17544993

Start: 305939

End: 307069

Strand: Reverse

Name: mmgC [H]

Synonym: RSc0274

Alternate gene names: 17544993

Gene position: 307069-305939 (Counterclockwise)

Preceding gene: 17544994

Following gene: 17544992

Centisome position: 8.26

GC content: 70.11

Gene sequence:

>1131_bases
ATGCTCCTGACACCCGAACAAGAGATGATCCGCGACGCCATCCGCACCTTCGTGCGCGAGGCGATCGTGCCGCACGCGGC
CGCGTGGGACCGCGACGCCACCTTCCCGAAGGACGTGCACCGCCAGCTCGGCGAGCTGGGCGCGTACGGCGTGGCGGTGC
CGGAGGCCTACGGCGGCGCCGGGCTGGATTACCTGTCGCTGGCGCTGATCCTGGAGGAGATCGCCGCCGGCGACGGCGGC
ACCTCCACCGTCATCAGCGTCAACAACTGCCCGGTGTGCAGCATGCTGATGGCCTATGCCGACGAGGCCCAGAAGCAGCG
CTGGCTGGCGCCGCTGGCGCGCGGCGAGATGCTGGGCGCGTTCTGCCTGACCGAGCCGCACGTGGGCTCGGATGCGGCCG
CGCTGCGCACCACCGCCACACGCGACGGCGAGCACTGGGTGCTCAACGGCGTGAAGCAGTTCATCACCAGCGGCAAGCAC
GCGGACGTGGCCATCGTGATGGCGGTGACCGACAAGGCCGCGGGCAAGCGCGGCATCAGCGCCTTCCTGGTGCCGACCGC
CACGCCCGGCTACATCGTCGCGCGGCTGGAGGACAAGCTCGGCCAGCACTCGTCCGACACCGCGCAGATCGTGCTGGAAG
ACTGCCGCATCCCCGCCGACTGCCTGCTCGGTTCGGCCGGCGAAGGCTACAGGATGGCGCTGTCCGGGCTGGAGGGCGGT
CGCATCGGCATCGCCGCGCAGAGCGTGGGGATGGCGCGCGCGGCCTTCGAGGCGGCGCTGGCCTATGCCAAGGAACGCGA
GAGCTTCGGCCAGCCGCTGTTCGCGCACCAGGCGGTGCAGTTCCGCCTGGCCGAGATGGCCACGCGCATCGACGTGGCGC
GGCAGATGGTCTGGCACGCCGCCAGCTTGAAGGACGCGGGGCGAGCGTGCCTGAAGGAGGCGGCCATGGCCAAGCTCAAC
GCCAGCGAGATGGCCGAGCGCGTGTGCTCGGATGCCATCCAGGTCTTCGGCGGCTACGGCTACGTGAGCGATTTTCCGGT
CGAGCGCATCTACCGCGACGTGCGCGTCTGCCAGATCTACGAAGGCACCAGCGACATCCAGAAGATCTTGATCGCCCGCG
CGCTCGCGTAG

Upstream 100 bases:

>100_bases
GTGGCGGGCATGCGCCGCGTGATCGCGGCCGCCACGCGCGGGGACAACGGCGCCTTCCGCAATTACGACGGCAGCGGCAT
CCAATGGTGAGGCCGGCACG

Downstream 100 bases:

>100_bases
CGGTTTTTTTGGGAAAACGGCAACAACCAAGGGGGAGTGCATCATGAACGGGGCCATCGATTTCTACTTCGACTTTTCGT
CGCCGTACGGCTACTTCGCC

Product: acyl CoA dehydrogenase oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MLLTPEQEMIRDAIRTFVREAIVPHAAAWDRDATFPKDVHRQLGELGAYGVAVPEAYGGAGLDYLSLALILEEIAAGDGG
TSTVISVNNCPVCSMLMAYADEAQKQRWLAPLARGEMLGAFCLTEPHVGSDAAALRTTATRDGEHWVLNGVKQFITSGKH
ADVAIVMAVTDKAAGKRGISAFLVPTATPGYIVARLEDKLGQHSSDTAQIVLEDCRIPADCLLGSAGEGYRMALSGLEGG
RIGIAAQSVGMARAAFEAALAYAKERESFGQPLFAHQAVQFRLAEMATRIDVARQMVWHAASLKDAGRACLKEAAMAKLN
ASEMAERVCSDAIQVFGGYGYVSDFPVERIYRDVRVCQIYEGTSDIQKILIARALA

Sequences:

>Translated_376_residues
MLLTPEQEMIRDAIRTFVREAIVPHAAAWDRDATFPKDVHRQLGELGAYGVAVPEAYGGAGLDYLSLALILEEIAAGDGG
TSTVISVNNCPVCSMLMAYADEAQKQRWLAPLARGEMLGAFCLTEPHVGSDAAALRTTATRDGEHWVLNGVKQFITSGKH
ADVAIVMAVTDKAAGKRGISAFLVPTATPGYIVARLEDKLGQHSSDTAQIVLEDCRIPADCLLGSAGEGYRMALSGLEGG
RIGIAAQSVGMARAAFEAALAYAKERESFGQPLFAHQAVQFRLAEMATRIDVARQMVWHAASLKDAGRACLKEAAMAKLN
ASEMAERVCSDAIQVFGGYGYVSDFPVERIYRDVRVCQIYEGTSDIQKILIARALA
>Mature_376_residues
MLLTPEQEMIRDAIRTFVREAIVPHAAAWDRDATFPKDVHRQLGELGAYGVAVPEAYGGAGLDYLSLALILEEIAAGDGG
TSTVISVNNCPVCSMLMAYADEAQKQRWLAPLARGEMLGAFCLTEPHVGSDAAALRTTATRDGEHWVLNGVKQFITSGKH
ADVAIVMAVTDKAAGKRGISAFLVPTATPGYIVARLEDKLGQHSSDTAQIVLEDCRIPADCLLGSAGEGYRMALSGLEGG
RIGIAAQSVGMARAAFEAALAYAKERESFGQPLFAHQAVQFRLAEMATRIDVARQMVWHAASLKDAGRACLKEAAMAKLN
ASEMAERVCSDAIQVFGGYGYVSDFPVERIYRDVRVCQIYEGTSDIQKILIARALA

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557233, Length=369, Percent_Identity=46.6124661246612, Blast_Score=348, Evalue=6e-96,
Organism=Homo sapiens, GI4501859, Length=373, Percent_Identity=38.8739946380697, Blast_Score=291, Evalue=5e-79,
Organism=Homo sapiens, GI7656849, Length=377, Percent_Identity=38.7267904509284, Blast_Score=273, Evalue=1e-73,
Organism=Homo sapiens, GI226958412, Length=377, Percent_Identity=37.4005305039788, Blast_Score=273, Evalue=2e-73,
Organism=Homo sapiens, GI187960098, Length=374, Percent_Identity=37.1657754010695, Blast_Score=265, Evalue=5e-71,
Organism=Homo sapiens, GI4557231, Length=374, Percent_Identity=37.1657754010695, Blast_Score=265, Evalue=6e-71,
Organism=Homo sapiens, GI226958414, Length=341, Percent_Identity=38.1231671554252, Blast_Score=254, Evalue=7e-68,
Organism=Homo sapiens, GI4501857, Length=376, Percent_Identity=35.9042553191489, Blast_Score=248, Evalue=5e-66,
Organism=Homo sapiens, GI21361497, Length=351, Percent_Identity=35.3276353276353, Blast_Score=214, Evalue=1e-55,
Organism=Homo sapiens, GI4557235, Length=338, Percent_Identity=35.7988165680473, Blast_Score=208, Evalue=6e-54,
Organism=Homo sapiens, GI76496475, Length=338, Percent_Identity=35.7988165680473, Blast_Score=208, Evalue=7e-54,
Organism=Homo sapiens, GI4503943, Length=380, Percent_Identity=30.2631578947368, Blast_Score=182, Evalue=5e-46,
Organism=Homo sapiens, GI7669494, Length=365, Percent_Identity=29.8630136986301, Blast_Score=167, Evalue=1e-41,
Organism=Homo sapiens, GI48976061, Length=339, Percent_Identity=31.5634218289086, Blast_Score=140, Evalue=2e-33,
Organism=Homo sapiens, GI211971008, Length=339, Percent_Identity=31.5634218289086, Blast_Score=140, Evalue=2e-33,
Organism=Homo sapiens, GI38505218, Length=342, Percent_Identity=31.2865497076023, Blast_Score=133, Evalue=2e-31,
Organism=Escherichia coli, GI87081958, Length=375, Percent_Identity=32.2666666666667, Blast_Score=177, Evalue=1e-45,
Organism=Escherichia coli, GI1786223, Length=374, Percent_Identity=28.8770053475936, Blast_Score=161, Evalue=5e-41,
Organism=Escherichia coli, GI87082384, Length=276, Percent_Identity=32.2463768115942, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI87081702, Length=367, Percent_Identity=25.0681198910082, Blast_Score=85, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17506239, Length=374, Percent_Identity=36.8983957219251, Blast_Score=272, Evalue=2e-73,
Organism=Caenorhabditis elegans, GI17508101, Length=371, Percent_Identity=38.0053908355795, Blast_Score=266, Evalue=9e-72,
Organism=Caenorhabditis elegans, GI17533517, Length=376, Percent_Identity=38.2978723404255, Blast_Score=264, Evalue=5e-71,
Organism=Caenorhabditis elegans, GI17569725, Length=376, Percent_Identity=36.1702127659575, Blast_Score=264, Evalue=6e-71,
Organism=Caenorhabditis elegans, GI17570075, Length=376, Percent_Identity=36.436170212766, Blast_Score=263, Evalue=2e-70,
Organism=Caenorhabditis elegans, GI17534899, Length=379, Percent_Identity=35.8839050131926, Blast_Score=261, Evalue=4e-70,
Organism=Caenorhabditis elegans, GI17538396, Length=375, Percent_Identity=33.0666666666667, Blast_Score=246, Evalue=1e-65,
Organism=Caenorhabditis elegans, GI71985184, Length=379, Percent_Identity=34.5646437994723, Blast_Score=214, Evalue=8e-56,
Organism=Caenorhabditis elegans, GI71990804, Length=293, Percent_Identity=37.2013651877133, Blast_Score=213, Evalue=1e-55,
Organism=Caenorhabditis elegans, GI17551932, Length=368, Percent_Identity=30.4347826086957, Blast_Score=193, Evalue=1e-49,
Organism=Caenorhabditis elegans, GI17505929, Length=377, Percent_Identity=29.1777188328912, Blast_Score=183, Evalue=2e-46,
Organism=Caenorhabditis elegans, GI17534353, Length=376, Percent_Identity=30.0531914893617, Blast_Score=182, Evalue=3e-46,
Organism=Caenorhabditis elegans, GI32563615, Length=230, Percent_Identity=37.8260869565217, Blast_Score=177, Evalue=9e-45,
Organism=Caenorhabditis elegans, GI71982178, Length=271, Percent_Identity=31.3653136531365, Blast_Score=170, Evalue=1e-42,
Organism=Caenorhabditis elegans, GI71985192, Length=326, Percent_Identity=32.5153374233129, Blast_Score=162, Evalue=2e-40,
Organism=Caenorhabditis elegans, GI17531909, Length=241, Percent_Identity=33.6099585062241, Blast_Score=142, Evalue=3e-34,
Organism=Caenorhabditis elegans, GI17562446, Length=347, Percent_Identity=28.5302593659942, Blast_Score=113, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17531913, Length=179, Percent_Identity=33.5195530726257, Blast_Score=101, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI86563381, Length=276, Percent_Identity=29.7101449275362, Blast_Score=79, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI86563383, Length=276, Percent_Identity=29.7101449275362, Blast_Score=79, Evalue=5e-15,
Organism=Drosophila melanogaster, GI21356377, Length=373, Percent_Identity=43.9678284182306, Blast_Score=338, Evalue=3e-93,
Organism=Drosophila melanogaster, GI24646207, Length=373, Percent_Identity=43.9678284182306, Blast_Score=321, Evalue=5e-88,
Organism=Drosophila melanogaster, GI24666513, Length=374, Percent_Identity=37.7005347593583, Blast_Score=281, Evalue=7e-76,
Organism=Drosophila melanogaster, GI24660351, Length=377, Percent_Identity=36.3395225464191, Blast_Score=264, Evalue=9e-71,
Organism=Drosophila melanogaster, GI21355753, Length=378, Percent_Identity=34.3915343915344, Blast_Score=221, Evalue=5e-58,
Organism=Drosophila melanogaster, GI281363737, Length=381, Percent_Identity=34.6456692913386, Blast_Score=216, Evalue=2e-56,
Organism=Drosophila melanogaster, GI19920834, Length=377, Percent_Identity=31.2997347480106, Blast_Score=179, Evalue=3e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 40325; Mature: 40325

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: PS00073 ACYL_COA_DH_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLTPEQEMIRDAIRTFVREAIVPHAAAWDRDATFPKDVHRQLGELGAYGVAVPEAYGGA
CCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
GLDYLSLALILEEIAAGDGGTSTVISVNNCPVCSMLMAYADEAQKQRWLAPLARGEMLGA
CHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FCLTEPHVGSDAAALRTTATRDGEHWVLNGVKQFITSGKHADVAIVMAVTDKAAGKRGIS
HHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCE
AFLVPTATPGYIVARLEDKLGQHSSDTAQIVLEDCRIPADCLLGSAGEGYRMALSGLEGG
EEEECCCCCCCEEEEEHHHHCCCCCCHHHHHHHHCCCCHHHHCCCCCCCHHHHCCCCCCC
RIGIAAQSVGMARAAFEAALAYAKERESFGQPLFAHQAVQFRLAEMATRIDVARQMVWHA
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASLKDAGRACLKEAAMAKLNASEMAERVCSDAIQVFGGYGYVSDFPVERIYRDVRVCQIY
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHEEE
EGTSDIQKILIARALA
CCHHHHHHHHHHHHCC
>Mature Secondary Structure
MLLTPEQEMIRDAIRTFVREAIVPHAAAWDRDATFPKDVHRQLGELGAYGVAVPEAYGGA
CCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
GLDYLSLALILEEIAAGDGGTSTVISVNNCPVCSMLMAYADEAQKQRWLAPLARGEMLGA
CHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FCLTEPHVGSDAAALRTTATRDGEHWVLNGVKQFITSGKHADVAIVMAVTDKAAGKRGIS
HHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCE
AFLVPTATPGYIVARLEDKLGQHSSDTAQIVLEDCRIPADCLLGSAGEGYRMALSGLEGG
EEEECCCCCCCEEEEEHHHHCCCCCCHHHHHHHHCCCCHHHHCCCCCCCHHHHCCCCCCC
RIGIAAQSVGMARAAFEAALAYAKERESFGQPLFAHQAVQFRLAEMATRIDVARQMVWHA
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASLKDAGRACLKEAAMAKLNASEMAERVCSDAIQVFGGYGYVSDFPVERIYRDVRVCQIY
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHEEE
EGTSDIQKILIARALA
CCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8759838; 8969508; 9384377 [H]