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The map label for this gene is yjdA [H]

Identifier: 17544875

GI number: 17544875

Start: 176457

End: 177260

Strand: Direct

Name: yjdA [H]

Synonym: RSc0156

Alternate gene names: 17544875

Gene position: 176457-177260 (Clockwise)

Preceding gene: 17544873

Following gene: 17544876

Centisome position: 4.75

GC content: 71.14

Gene sequence:

>804_bases
ATGGCGCAGACGCCGAACGAATCGCCCATATTGCCCCGCATTGCCCTCGTGACCGGCGCCGCCCGCCGCGTAGGCCGCGT
GATCGCGCTGGCGCTGGCCCGGCAGGGCTGGGATGTCGCCGTGCATTGCCACCGCTCCCGCGCAGAGGCCGACGCGGTCG
CCGCCGAGATCATCGCCATGGGCCGGCGCGCCGCCGTGCTGCAAGCGGATCTGGCCGACGAGGCGGCCGCAGGCCGGCTC
ATTGCCGACTGCACCGCAGCGCTGGGTACGCCCACGTGCCTGGTCAACAATGCCTCCCTGTTCCAGTACGACGTGGCGAC
CAGCTTCAGCTACGCCTCGCTCGACACGCACATGCGCATCAACGTGGCGGCGCCGCTGCTGCTCGCGCGCGAGCTGCACC
GGGTGCTGGCGGCCGAGGACGGCGGCGCGGGCGAGGTGCGCGGCGTGGTCGTCAACCTGCTCGACCAGAAGCTGGACAAC
CTGAACCCGGACTTCCTGTCGTACACGCTGTCCAAGGCGGCGCTGGCGACCGCGACGACGCAATTGGCCCAGGCGCTCGC
GCCCACGCTGCGCGTGGTGGGCGTGGCGCCCGGGGCGACACTGGTGTCCTGGAAGCAGTCGGAGAGCGGGTTCGAGCGCG
CACACAAGATGGCGCCGCTGGGGCGCTCGTCCACGCCGGAAGACATTGCCGAGGCGGTGTGCTATCTGACCACCGCGCGG
GCCGTCACCGGCACCACGCTGTTCGTCGACGGCGGCCAGCACCTGATGCCGCTGGCCCGCGACGTGATGTTCCTGACCGA
ATAA

Upstream 100 bases:

>100_bases
GCGCGGACGATGGTGGAGAACAGGCGGTCGGACTGCGCCTGCGCGGCCTCGCTGGGAAGCGGTAAACTTACGGTTTTGCT
CATCGCCGGATTGTAAACAA

Downstream 100 bases:

>100_bases
GACCCCTCATCGCCTTATGCCTTTCCTGCTTTCCCATCCGCGCCTGGCGCACTGCCGCCGCCTGTTCCTGCGCAACTACG
AGGTGCAGATCAACATCGGC

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MAQTPNESPILPRIALVTGAARRVGRVIALALARQGWDVAVHCHRSRAEADAVAAEIIAMGRRAAVLQADLADEAAAGRL
IADCTAALGTPTCLVNNASLFQYDVATSFSYASLDTHMRINVAAPLLLARELHRVLAAEDGGAGEVRGVVVNLLDQKLDN
LNPDFLSYTLSKAALATATTQLAQALAPTLRVVGVAPGATLVSWKQSESGFERAHKMAPLGRSSTPEDIAEAVCYLTTAR
AVTGTTLFVDGGQHLMPLARDVMFLTE

Sequences:

>Translated_267_residues
MAQTPNESPILPRIALVTGAARRVGRVIALALARQGWDVAVHCHRSRAEADAVAAEIIAMGRRAAVLQADLADEAAAGRL
IADCTAALGTPTCLVNNASLFQYDVATSFSYASLDTHMRINVAAPLLLARELHRVLAAEDGGAGEVRGVVVNLLDQKLDN
LNPDFLSYTLSKAALATATTQLAQALAPTLRVVGVAPGATLVSWKQSESGFERAHKMAPLGRSSTPEDIAEAVCYLTTAR
AVTGTTLFVDGGQHLMPLARDVMFLTE
>Mature_266_residues
AQTPNESPILPRIALVTGAARRVGRVIALALARQGWDVAVHCHRSRAEADAVAAEIIAMGRRAAVLQADLADEAAAGRLI
ADCTAALGTPTCLVNNASLFQYDVATSFSYASLDTHMRINVAAPLLLARELHRVLAAEDGGAGEVRGVVVNLLDQKLDNL
NPDFLSYTLSKAALATATTQLAQALAPTLRVVGVAPGATLVSWKQSESGFERAHKMAPLGRSSTPEDIAEAVCYLTTARA
VTGTTLFVDGGQHLMPLARDVMFLTE

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=247, Percent_Identity=26.3157894736842, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI15277342, Length=254, Percent_Identity=27.1653543307087, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI2367175, Length=251, Percent_Identity=33.0677290836653, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1789378, Length=253, Percent_Identity=30.0395256916996, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788459, Length=247, Percent_Identity=26.7206477732794, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=26.7206477732794, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787891, Length=244, Percent_Identity=25.8196721311475, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87082160, Length=249, Percent_Identity=26.1044176706827, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787335, Length=249, Percent_Identity=28.5140562248996, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87082100, Length=257, Percent_Identity=26.0700389105058, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=258, Percent_Identity=27.906976744186, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17562904, Length=281, Percent_Identity=25.9786476868327, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17559104, Length=267, Percent_Identity=24.7191011235955, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI115534694, Length=250, Percent_Identity=28.8, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17562910, Length=269, Percent_Identity=24.1635687732342, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17562906, Length=267, Percent_Identity=26.5917602996255, Blast_Score=64, Evalue=1e-10,
Organism=Drosophila melanogaster, GI23397609, Length=255, Percent_Identity=28.2352941176471, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28571526, Length=261, Percent_Identity=28.3524904214559, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21357041, Length=257, Percent_Identity=27.6264591439689, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24644339, Length=260, Percent_Identity=26.5384615384615, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 28137; Mature: 28005

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQTPNESPILPRIALVTGAARRVGRVIALALARQGWDVAVHCHRSRAEADAVAAEIIAM
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHH
GRRAAVLQADLADEAAAGRLIADCTAALGTPTCLVNNASLFQYDVATSFSYASLDTHMRI
CCHHHHHHHHHHHHHHHCHHHHHHHHHHCCCEEEECCCHHEEEEHHCCCCEEECCCEEEE
NVAAPLLLARELHRVLAAEDGGAGEVRGVVVNLLDQKLDNLNPDFLSYTLSKAALATATT
EHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
QLAQALAPTLRVVGVAPGATLVSWKQSESGFERAHKMAPLGRSSTPEDIAEAVCYLTTAR
HHHHHHHHHHEEEEECCCCEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
AVTGTTLFVDGGQHLMPLARDVMFLTE
HHCCEEEEEECCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
AQTPNESPILPRIALVTGAARRVGRVIALALARQGWDVAVHCHRSRAEADAVAAEIIAM
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHH
GRRAAVLQADLADEAAAGRLIADCTAALGTPTCLVNNASLFQYDVATSFSYASLDTHMRI
CCHHHHHHHHHHHHHHHCHHHHHHHHHHCCCEEEECCCHHEEEEHHCCCCEEECCCEEEE
NVAAPLLLARELHRVLAAEDGGAGEVRGVVVNLLDQKLDNLNPDFLSYTLSKAALATATT
EHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
QLAQALAPTLRVVGVAPGATLVSWKQSESGFERAHKMAPLGRSSTPEDIAEAVCYLTTAR
HHHHHHHHHHEEEEECCCCEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
AVTGTTLFVDGGQHLMPLARDVMFLTE
HHCCEEEEEECCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]