Click here to switch to the map view.

The map label for this gene is ybdD [H]

Identifier: 17544742

GI number: 17544742

Start: 28493

End: 28687

Strand: Direct

Name: ybdD [H]

Synonym: RSc0023

Alternate gene names: 17544742

Gene position: 28493-28687 (Clockwise)

Preceding gene: 17544741

Following gene: 17544749

Centisome position: 0.77

GC content: 63.08

Gene sequence:

>195_bases
ATGCGCGAAGAGATCGAATCCCTCGGCCGGTACCTGGGCCAGGCGATGCGCCTGATGGTCGGCGTGCCGGACTACGACAC
GTATGTCCGGCACATGCAGGAAACCCATCCCGACCAGCCGGTCATGACGTACGAGGAATTCTTCCGCGAACGCCAGGACG
CACGCTACAAGGGCCGCGTGGGACGGTGTTGTTGA

Upstream 100 bases:

>100_bases
CGCCCGACGGTCAACGAAACGCCGTACGAAGCGCTGGGCGCCACGCACTGACGCCCGCATCCGAGGGCGGCATGCCGCCC
TCGCTCAAGGAGACACGACC

Downstream 100 bases:

>100_bases
CGACGAACGTGTCGGGTAGACCCAGAGAGCAGGACGACCGCCGCGGCATGGCGACATGCCCGGCGGTTTTTTCTTGGCGG
GTGCGCTACATGGCGGGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 64; Mature: 64

Protein sequence:

>64_residues
MREEIESLGRYLGQAMRLMVGVPDYDTYVRHMQETHPDQPVMTYEEFFRERQDARYKGRVGRCC

Sequences:

>Translated_64_residues
MREEIESLGRYLGQAMRLMVGVPDYDTYVRHMQETHPDQPVMTYEEFFRERQDARYKGRVGRCC
>Mature_64_residues
MREEIESLGRYLGQAMRLMVGVPDYDTYVRHMQETHPDQPVMTYEEFFRERQDARYKGRVGRCC

Specific function: Unknown

COG id: COG2879

COG function: function code S; Uncharacterized small protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yjiX [H]

Homologues:

Organism=Escherichia coli, GI87081761, Length=65, Percent_Identity=64.6153846153846, Blast_Score=92, Evalue=6e-21,
Organism=Escherichia coli, GI1790813, Length=58, Percent_Identity=62.0689655172414, Blast_Score=83, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007423 [H]

Pfam domain/function: PF04328 DUF466 [H]

EC number: NA

Molecular weight: Translated: 7733; Mature: 7733

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
7.8 %Met     (Translated Protein)
10.9 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
7.8 %Met     (Mature Protein)
10.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREEIESLGRYLGQAMRLMVGVPDYDTYVRHMQETHPDQPVMTYEEFFRERQDARYKGRV
CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHCCC
GRCC
CCCC
>Mature Secondary Structure
MREEIESLGRYLGQAMRLMVGVPDYDTYVRHMQETHPDQPVMTYEEFFRERQDARYKGRV
CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHCCC
GRCC
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]