| Definition | Nostoc sp. PCC 7120, complete genome. |
|---|---|
| Accession | NC_003272 |
| Length | 6,413,771 |
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The map label for this gene is ydiF [H]
Identifier: 17231675
GI number: 17231675
Start: 5032098
End: 5033792
Strand: Reverse
Name: ydiF [H]
Synonym: all4183
Alternate gene names: 17231675
Gene position: 5033792-5032098 (Counterclockwise)
Preceding gene: 17231676
Following gene: 17231674
Centisome position: 78.48
GC content: 44.37
Gene sequence:
>1695_bases ATGCTGCGATTAGAACATATTAGTAAAATTTATCCTACAGGCGAAGTTCTCAAAGATATCAACTGGGAAGTGAAACCAGG CGATCGCATTGGTTTAGTCGGTGTCAACGGTGCGGGTAAATCGACTCAGCTAAAAATTATTACTGGGGAGATAGAACCGA CGGCTGGGGAAATTATCCGTCCTTCTAGCCTGCACATAGCTTACCTCAACCAAGAGTTTGAGGTAGATCCTAGCCGCACC GTCAGAGAAGAGTTTTGGACTGTATTTAAGGAAGCCAACCAAGTACAATTGGCTCTAACCCAAGTACAACATGATATGCA AACAGCGACTCCAGAGGAACTGGATAAGCTAATCGACAAATTGGATCGTTTGCAGCGTCAGTTTGAAGGTTTGGATGGCT ATGGTTTAGAAGCGCGCATTGGGAAAATTCTCCCAGAAATGGGATTTGAGCAAGAAGATGGCGATCGCCTCGTCAGCGCT TTCTCCGGTGGTTGGCAAATGCGGATGAGTTTGGGTAAGATTCTTCTGCAAGCACCAGATATCTTACTGCTGGACGAGCC GACTAACCACTTAGACTTGGAAACTATTGAGTGGTTAGAAAATTACCTGAAAAAGCTAACTACACCAATGGTCATAGTCT CCCATGACCGGGAGTTTCTTGACCGCCTCTGTACCCAAATTGTGGAAACTGAACGAGGTGTTTCTAGTACTTATCTGGGT AACTACACATCTTATCTAGAACAAAAAGCCGAAAGCCAGTTAGCTCAAATGAGTGCTTACGAACGTCAGCAGAAAGAAAT CGAGAAACAGCAAGCTTTTGTTGATAGATTCCGCGCCAGTGCTACCCGCAGTACTCAAGCTAAAAGCCGAGAAAAGCAAC TAGATAAGATCGAACGCATCGAAGCGCCTGTGGCTGGTGTCAGAACCTTGCATTTCCGTTTTCCACCCGCACCCCGCAGT GGACGAGAGGTAGTGAAAATCAAGGATTTAACCCATACCTACGATGATAAAATTTTGTTCTTGGGTGCGAACCTTTTAAT TGAAAGGGGCGATCGCATTGCTTTCTTAGGCCCCAACGGTGCAGGTAAATCTACGCTGTTGCGGATAATTATGGGTTTAG AACCACCCACAGAAGGTAGCGTGGGCATAGGAGAACACGGTGTTATTCCTGGTTACTTTGAGCAAAATCAAGCCGAAGCT TTAGACTTGAAAAAAACGGTTATGGAAACTATCCACGATGAAGTTCCTGACTGGAAAAACGAAGAAGTCCGCACGCTTTT GGGTAAGTTTCTGTTTACAGGGGACACCGTATTTAAGCAAGTAGAAGCATTAAGTGGAGGAGAAAAAGCACGTTTAGCAT TGGCGAAAATGCTCTTACGTCCTGCTAACTTAATTATTCTCGATGAGCCTACTAACCACCTAGATATTCCCGCAAAAGAA ATGCTGGAAGAAGCACTACAAAATTATGATGGCACGGCGATTGTTGTCTCTCACGACCGTTATTTTATTTCTCAGGTAGC CAACAAAATCGTCGAAATTCGGGATGGTGAATTTCGTGTGTATCTAGGTGATTACCACTATTATCTAGACAAAATCGCCG AGGAAAAAGAAACGGCGAAATTAGAGGCGATCGCTGCTGAAAAAGCTGCGAAAAAAGCCGCTAAATCAGCTAAATCTTCT GCCAAAAAGAAGTGA
Upstream 100 bases:
>100_bases AGTTTCTTAAGACAAATTATTGGTTAATTTTTGTTAATATTGGACACAGTATTGGTACTTCGTCCGCAACTAACCATAAT TCCTAACTGAGAGAAACTTG
Downstream 100 bases:
>100_bases AGCATCTAAACTACTGGTAATAGGTAATGGGTAATAGGTAAGCTTTCTTCTCAATTACCAATTACCTATTACCCATCCCC TTTTATCACAAAATATATTC
Product: ATP-binding protein of ABC transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 564; Mature: 564
Protein sequence:
>564_residues MLRLEHISKIYPTGEVLKDINWEVKPGDRIGLVGVNGAGKSTQLKIITGEIEPTAGEIIRPSSLHIAYLNQEFEVDPSRT VREEFWTVFKEANQVQLALTQVQHDMQTATPEELDKLIDKLDRLQRQFEGLDGYGLEARIGKILPEMGFEQEDGDRLVSA FSGGWQMRMSLGKILLQAPDILLLDEPTNHLDLETIEWLENYLKKLTTPMVIVSHDREFLDRLCTQIVETERGVSSTYLG NYTSYLEQKAESQLAQMSAYERQQKEIEKQQAFVDRFRASATRSTQAKSREKQLDKIERIEAPVAGVRTLHFRFPPAPRS GREVVKIKDLTHTYDDKILFLGANLLIERGDRIAFLGPNGAGKSTLLRIIMGLEPPTEGSVGIGEHGVIPGYFEQNQAEA LDLKKTVMETIHDEVPDWKNEEVRTLLGKFLFTGDTVFKQVEALSGGEKARLALAKMLLRPANLIILDEPTNHLDIPAKE MLEEALQNYDGTAIVVSHDRYFISQVANKIVEIRDGEFRVYLGDYHYYLDKIAEEKETAKLEAIAAEKAAKKAAKSAKSS AKKK
Sequences:
>Translated_564_residues MLRLEHISKIYPTGEVLKDINWEVKPGDRIGLVGVNGAGKSTQLKIITGEIEPTAGEIIRPSSLHIAYLNQEFEVDPSRT VREEFWTVFKEANQVQLALTQVQHDMQTATPEELDKLIDKLDRLQRQFEGLDGYGLEARIGKILPEMGFEQEDGDRLVSA FSGGWQMRMSLGKILLQAPDILLLDEPTNHLDLETIEWLENYLKKLTTPMVIVSHDREFLDRLCTQIVETERGVSSTYLG NYTSYLEQKAESQLAQMSAYERQQKEIEKQQAFVDRFRASATRSTQAKSREKQLDKIERIEAPVAGVRTLHFRFPPAPRS GREVVKIKDLTHTYDDKILFLGANLLIERGDRIAFLGPNGAGKSTLLRIIMGLEPPTEGSVGIGEHGVIPGYFEQNQAEA LDLKKTVMETIHDEVPDWKNEEVRTLLGKFLFTGDTVFKQVEALSGGEKARLALAKMLLRPANLIILDEPTNHLDIPAKE MLEEALQNYDGTAIVVSHDRYFISQVANKIVEIRDGEFRVYLGDYHYYLDKIAEEKETAKLEAIAAEKAAKKAAKSAKSS AKKK >Mature_564_residues MLRLEHISKIYPTGEVLKDINWEVKPGDRIGLVGVNGAGKSTQLKIITGEIEPTAGEIIRPSSLHIAYLNQEFEVDPSRT VREEFWTVFKEANQVQLALTQVQHDMQTATPEELDKLIDKLDRLQRQFEGLDGYGLEARIGKILPEMGFEQEDGDRLVSA FSGGWQMRMSLGKILLQAPDILLLDEPTNHLDLETIEWLENYLKKLTTPMVIVSHDREFLDRLCTQIVETERGVSSTYLG NYTSYLEQKAESQLAQMSAYERQQKEIEKQQAFVDRFRASATRSTQAKSREKQLDKIERIEAPVAGVRTLHFRFPPAPRS GREVVKIKDLTHTYDDKILFLGANLLIERGDRIAFLGPNGAGKSTLLRIIMGLEPPTEGSVGIGEHGVIPGYFEQNQAEA LDLKKTVMETIHDEVPDWKNEEVRTLLGKFLFTGDTVFKQVEALSGGEKARLALAKMLLRPANLIILDEPTNHLDIPAKE MLEEALQNYDGTAIVVSHDRYFISQVANKIVEIRDGEFRVYLGDYHYYLDKIAEEKETAKLEAIAAEKAAKKAAKSAKSS AKKK
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=532, Percent_Identity=31.9548872180451, Blast_Score=266, Evalue=4e-71, Organism=Homo sapiens, GI10947137, Length=530, Percent_Identity=33.0188679245283, Blast_Score=258, Evalue=1e-68, Organism=Homo sapiens, GI27881506, Length=512, Percent_Identity=33.59375, Blast_Score=257, Evalue=2e-68, Organism=Homo sapiens, GI69354671, Length=551, Percent_Identity=32.3049001814882, Blast_Score=216, Evalue=4e-56, Organism=Homo sapiens, GI10947135, Length=551, Percent_Identity=32.3049001814882, Blast_Score=216, Evalue=5e-56, Organism=Homo sapiens, GI108773784, Length=517, Percent_Identity=24.5647969052224, Blast_Score=108, Evalue=1e-23, Organism=Homo sapiens, GI108773782, Length=517, Percent_Identity=24.5647969052224, Blast_Score=108, Evalue=1e-23, Organism=Homo sapiens, GI47078218, Length=240, Percent_Identity=28.3333333333333, Blast_Score=77, Evalue=6e-14, Organism=Homo sapiens, GI45446740, Length=240, Percent_Identity=28.3333333333333, Blast_Score=77, Evalue=6e-14, Organism=Homo sapiens, GI31657092, Length=195, Percent_Identity=27.1794871794872, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI157502201, Length=253, Percent_Identity=25.6916996047431, Blast_Score=67, Evalue=4e-11, Organism=Homo sapiens, GI157502203, Length=253, Percent_Identity=25.6916996047431, Blast_Score=66, Evalue=7e-11, Organism=Escherichia coli, GI1787041, Length=541, Percent_Identity=35.8595194085028, Blast_Score=330, Evalue=2e-91, Organism=Escherichia coli, GI1789751, Length=553, Percent_Identity=34.7197106690778, Blast_Score=329, Evalue=3e-91, Organism=Escherichia coli, GI2367384, Length=555, Percent_Identity=35.4954954954955, Blast_Score=299, Evalue=4e-82, Organism=Escherichia coli, GI1787182, Length=528, Percent_Identity=35.0378787878788, Blast_Score=281, Evalue=1e-76, Organism=Escherichia coli, GI87081791, Length=213, Percent_Identity=29.5774647887324, Blast_Score=80, Evalue=4e-16, Organism=Escherichia coli, GI1789672, Length=237, Percent_Identity=29.957805907173, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1788165, Length=186, Percent_Identity=29.5698924731183, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI48994943, Length=521, Percent_Identity=23.4165067178503, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI1787758, Length=219, Percent_Identity=27.3972602739726, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1790467, Length=234, Percent_Identity=27.7777777777778, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI48995001, Length=550, Percent_Identity=22, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1790544, Length=230, Percent_Identity=26.5217391304348, Blast_Score=74, Evalue=3e-14, Organism=Escherichia coli, GI1788225, Length=224, Percent_Identity=27.2321428571429, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1789873, Length=237, Percent_Identity=26.5822784810127, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI1787089, Length=239, Percent_Identity=28.0334728033473, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI1786319, Length=194, Percent_Identity=31.9587628865979, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1787029, Length=242, Percent_Identity=26.4462809917355, Blast_Score=66, Evalue=5e-12, Organism=Escherichia coli, GI1789891, Length=228, Percent_Identity=23.6842105263158, Blast_Score=66, Evalue=7e-12, Organism=Escherichia coli, GI1787164, Length=194, Percent_Identity=28.8659793814433, Blast_Score=66, Evalue=8e-12, Organism=Escherichia coli, GI1787105, Length=223, Percent_Identity=27.3542600896861, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI87082267, Length=217, Percent_Identity=24.8847926267281, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI87081834, Length=198, Percent_Identity=29.2929292929293, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1790525, Length=203, Percent_Identity=29.5566502463054, Blast_Score=63, Evalue=4e-11, Organism=Escherichia coli, GI1787112, Length=242, Percent_Identity=28.9256198347107, Blast_Score=63, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17553372, Length=517, Percent_Identity=33.4622823984526, Blast_Score=268, Evalue=4e-72, Organism=Caenorhabditis elegans, GI17559834, Length=523, Percent_Identity=31.1663479923518, Blast_Score=250, Evalue=2e-66, Organism=Caenorhabditis elegans, GI17555318, Length=515, Percent_Identity=31.8446601941748, Blast_Score=247, Evalue=1e-65, Organism=Caenorhabditis elegans, GI17555800, Length=507, Percent_Identity=23.0769230769231, Blast_Score=90, Evalue=3e-18, Organism=Caenorhabditis elegans, GI71992290, Length=226, Percent_Identity=27.4336283185841, Blast_Score=77, Evalue=3e-14, Organism=Caenorhabditis elegans, GI115533592, Length=216, Percent_Identity=28.7037037037037, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17543740, Length=198, Percent_Identity=31.8181818181818, Blast_Score=70, Evalue=3e-12, Organism=Caenorhabditis elegans, GI71992285, Length=218, Percent_Identity=29.3577981651376, Blast_Score=69, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17558664, Length=301, Percent_Identity=26.2458471760797, Blast_Score=65, Evalue=6e-11, Organism=Caenorhabditis elegans, GI212646699, Length=198, Percent_Identity=29.7979797979798, Blast_Score=65, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6320874, Length=556, Percent_Identity=32.0143884892086, Blast_Score=275, Evalue=1e-74, Organism=Saccharomyces cerevisiae, GI6321121, Length=546, Percent_Identity=31.8681318681319, Blast_Score=268, Evalue=1e-72, Organism=Saccharomyces cerevisiae, GI6325030, Length=378, Percent_Identity=29.1005291005291, Blast_Score=139, Evalue=2e-33, Organism=Saccharomyces cerevisiae, GI6324314, Length=384, Percent_Identity=29.1666666666667, Blast_Score=134, Evalue=4e-32, Organism=Saccharomyces cerevisiae, GI6323278, Length=381, Percent_Identity=28.3464566929134, Blast_Score=125, Evalue=1e-29, Organism=Drosophila melanogaster, GI24666836, Length=548, Percent_Identity=33.029197080292, Blast_Score=279, Evalue=3e-75, Organism=Drosophila melanogaster, GI24642252, Length=549, Percent_Identity=32.2404371584699, Blast_Score=270, Evalue=2e-72, Organism=Drosophila melanogaster, GI18859989, Length=549, Percent_Identity=32.2404371584699, Blast_Score=270, Evalue=2e-72, Organism=Drosophila melanogaster, GI24641342, Length=566, Percent_Identity=30.565371024735, Blast_Score=245, Evalue=6e-65, Organism=Drosophila melanogaster, GI24661270, Length=509, Percent_Identity=24.5579567779961, Blast_Score=104, Evalue=1e-22, Organism=Drosophila melanogaster, GI21355589, Length=509, Percent_Identity=24.5579567779961, Blast_Score=104, Evalue=1e-22, Organism=Drosophila melanogaster, GI28574259, Length=173, Percent_Identity=28.9017341040462, Blast_Score=71, Evalue=2e-12, Organism=Drosophila melanogaster, GI24659289, Length=236, Percent_Identity=26.6949152542373, Blast_Score=69, Evalue=6e-12, Organism=Drosophila melanogaster, GI281363262, Length=178, Percent_Identity=25.2808988764045, Blast_Score=69, Evalue=1e-11, Organism=Drosophila melanogaster, GI45550390, Length=231, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=1e-11, Organism=Drosophila melanogaster, GI24653245, Length=178, Percent_Identity=25.2808988764045, Blast_Score=69, Evalue=1e-11, Organism=Drosophila melanogaster, GI281361582, Length=195, Percent_Identity=29.7435897435897, Blast_Score=67, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 63635; Mature: 63635
Theoretical pI: Translated: 5.38; Mature: 5.38
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRLEHISKIYPTGEVLKDINWEVKPGDRIGLVGVNGAGKSTQLKIITGEIEPTAGEIIR CCCHHHHHHHCCCHHHHHHCCCEECCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCCCC PSSLHIAYLNQEFEVDPSRTVREEFWTVFKEANQVQLALTQVQHDMQTATPEELDKLIDK CCCEEEEEECCEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHH LDRLQRQFEGLDGYGLEARIGKILPEMGFEQEDGDRLVSAFSGGWQMRMSLGKILLQAPD HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCC ILLLDEPTNHLDLETIEWLENYLKKLTTPMVIVSHDREFLDRLCTQIVETERGVSSTYLG EEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHCCCCHHHHH NYTSYLEQKAESQLAQMSAYERQQKEIEKQQAFVDRFRASATRSTQAKSREKQLDKIERI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EAPVAGVRTLHFRFPPAPRSGREVVKIKDLTHTYDDKILFLGANLLIERGDRIAFLGPNG HCCHHCEEEEEEECCCCCCCCCCEEEEECCCCCCCCEEEEEECHHHEECCCEEEEECCCC AGKSTLLRIIMGLEPPTEGSVGIGEHGVIPGYFEQNQAEALDLKKTVMETIHDEVPDWKN CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC EEVRTLLGKFLFTGDTVFKQVEALSGGEKARLALAKMLLRPANLIILDEPTNHLDIPAKE HHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHH MLEEALQNYDGTAIVVSHDRYFISQVANKIVEIRDGEFRVYLGDYHYYLDKIAEEKETAK HHHHHHHCCCCCEEEEECCHHHHHHHHHHHHEECCCCEEEEECHHHHHHHHHHHHHHHHH LEAIAAEKAAKKAAKSAKSSAKKK HHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MLRLEHISKIYPTGEVLKDINWEVKPGDRIGLVGVNGAGKSTQLKIITGEIEPTAGEIIR CCCHHHHHHHCCCHHHHHHCCCEECCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCCCC PSSLHIAYLNQEFEVDPSRTVREEFWTVFKEANQVQLALTQVQHDMQTATPEELDKLIDK CCCEEEEEECCEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHH LDRLQRQFEGLDGYGLEARIGKILPEMGFEQEDGDRLVSAFSGGWQMRMSLGKILLQAPD HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCC ILLLDEPTNHLDLETIEWLENYLKKLTTPMVIVSHDREFLDRLCTQIVETERGVSSTYLG EEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHCCCCHHHHH NYTSYLEQKAESQLAQMSAYERQQKEIEKQQAFVDRFRASATRSTQAKSREKQLDKIERI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EAPVAGVRTLHFRFPPAPRSGREVVKIKDLTHTYDDKILFLGANLLIERGDRIAFLGPNG HCCHHCEEEEEEECCCCCCCCCCEEEEECCCCCCCCEEEEEECHHHEECCCEEEEECCCC AGKSTLLRIIMGLEPPTEGSVGIGEHGVIPGYFEQNQAEALDLKKTVMETIHDEVPDWKN CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC EEVRTLLGKFLFTGDTVFKQVEALSGGEKARLALAKMLLRPANLIILDEPTNHLDIPAKE HHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHH MLEEALQNYDGTAIVVSHDRYFISQVANKIVEIRDGEFRVYLGDYHYYLDKIAEEKETAK HHHHHHHCCCCCEEEEECCHHHHHHHHHHHHEECCCCEEEEECHHHHHHHHHHHHHHHHH LEAIAAEKAAKKAAKSAKSSAKKK HHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9202461; 9384377 [H]