Click here to switch to the map view.

The map label for this gene is rbpD

Identifier: 17231514

GI number: 17231514

Start: 4843778

End: 4844062

Strand: Reverse

Name: rbpD

Synonym: asl4022

Alternate gene names: 17231514

Gene position: 4844062-4843778 (Counterclockwise)

Preceding gene: 17231515

Following gene: 17231513

Centisome position: 75.53

GC content: 44.91

Gene sequence:

>285_bases
ATGACTATCTACGTTGGAAATCTCTCATACCGCGCCACCGAAGCAGACTTAAAAGCCGTATTTGCAGACTACGGTGAGGT
CAAAAGAGTCGTATTACCTACAGACCGTGAAACCGGTCGGATGCGTGGTTTTGCCTTTGTTGAAATGAATGAAGATGCCC
AAGAAGATGCAGCTATTACCGAATTAGATGGTGCAGAATGGATGGGTCGTCAGCTGAGAGTCAATAAAGCTAAACCGCGA
GAAGATGACCGACGAGGTAGTTGGGGTAAAAAACAAGATTATTAA

Upstream 100 bases:

>100_bases
AACATTTGCCGTCTGCAACTAAAGAAGACTATGCAATATTTGCTTAGAACTTTTTTAAAGCTGAACTAGCCGCTCTTTGT
TAAGAATTACGTGATCCCAC

Downstream 100 bases:

>100_bases
TCAAAAATGGCTCCCTACACTAGCAAATTTTATCCTACTTATCAAGACACATAAGGCCGATATTTGCTAGAAATATCTCG
GACAATGCAATAAAAATTCC

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 94; Mature: 93

Protein sequence:

>94_residues
MTIYVGNLSYRATEADLKAVFADYGEVKRVVLPTDRETGRMRGFAFVEMNEDAQEDAAITELDGAEWMGRQLRVNKAKPR
EDDRRGSWGKKQDY

Sequences:

>Translated_94_residues
MTIYVGNLSYRATEADLKAVFADYGEVKRVVLPTDRETGRMRGFAFVEMNEDAQEDAAITELDGAEWMGRQLRVNKAKPR
EDDRRGSWGKKQDY
>Mature_93_residues
TIYVGNLSYRATEADLKAVFADYGEVKRVVLPTDRETGRMRGFAFVEMNEDAQEDAAITELDGAEWMGRQLRVNKAKPRE
DDRRGSWGKKQDY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain

Homologues:

Organism=Homo sapiens, GI4502847, Length=83, Percent_Identity=42.1686746987952, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI14149675, Length=81, Percent_Identity=38.2716049382716, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI4557493, Length=81, Percent_Identity=38.2716049382716, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI5174637, Length=89, Percent_Identity=38.2022471910112, Blast_Score=62, Evalue=8e-11,
Organism=Homo sapiens, GI45439316, Length=89, Percent_Identity=38.2022471910112, Blast_Score=62, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI17508587, Length=82, Percent_Identity=45.1219512195122, Blast_Score=77, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17508567, Length=78, Percent_Identity=47.4358974358974, Blast_Score=77, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17508585, Length=78, Percent_Identity=43.5897435897436, Blast_Score=77, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17539498, Length=86, Percent_Identity=40.6976744186046, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=36.8421052631579, Blast_Score=62, Evalue=5e-11,
Organism=Drosophila melanogaster, GI17647301, Length=91, Percent_Identity=39.5604395604396, Blast_Score=68, Evalue=9e-13,
Organism=Drosophila melanogaster, GI17137710, Length=76, Percent_Identity=40.7894736842105, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBPD_NOSS1 (Q44556)

Other databases:

- EMBL:   BA000019
- PIR:   AG2308
- PIR:   S58674
- RefSeq:   NP_488062.1
- HSSP:   Q9UNP9
- ProteinModelPortal:   Q44556
- SMR:   Q44556
- GeneID:   1107620
- GenomeReviews:   BA000019_GR
- KEGG:   ana:asl4022
- eggNOG:   COG0724
- HOGENOM:   HBG756718
- OMA:   SKATPRE
- ProtClustDB:   CLSK379320
- BioCyc:   NSP103690:ASL4022-MONOMER
- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465
- Gene3D:   G3DSA:3.30.70.330
- PANTHER:   PTHR10432:SF31
- SMART:   SM00360

Pfam domain/function: PF00076 RRM_1

EC number: NA

Molecular weight: Translated: 10792; Mature: 10661

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIYVGNLSYRATEADLKAVFADYGEVKRVVLPTDRETGRMRGFAFVEMNEDAQEDAAIT
CEEEECCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCEEE
ELDGAEWMGRQLRVNKAKPREDDRRGSWGKKQDY
ECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TIYVGNLSYRATEADLKAVFADYGEVKRVVLPTDRETGRMRGFAFVEMNEDAQEDAAIT
EEEECCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCEEE
ELDGAEWMGRQLRVNKAKPREDDRRGSWGKKQDY
ECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840