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The map label for this gene is cydB [H]

Identifier: 17231515

GI number: 17231515

Start: 4844455

End: 4845495

Strand: Reverse

Name: cydB [H]

Synonym: all4023

Alternate gene names: 17231515

Gene position: 4845495-4844455 (Counterclockwise)

Preceding gene: 17231516

Following gene: 17231514

Centisome position: 75.55

GC content: 43.23

Gene sequence:

>1041_bases
GTGTATGGTAAATCAATAGGTAATTGTATGGAGAATTTAGAACACTTTTTAGCCCAGGTATGGTTTATTATCTTGGCTCT
GTTTTTGTTTCTCTACGTTATGTTAGACGGGTTTGATCTAGGCGTAGGTATCCTGTCCCTAACCAGTTCCAATGAGGAGC
GACGGGACATTTTAATGACGAGTTTGGGTAATATTTGGGATGCCAATGAAACCTGGCTGGTGTTGATGGGAGGTGCATTA
TTTGGGGCATTTCCTCTGGCTTATGGCACCATTTTGAATGCGCTCTACATTCCCATTTTTGGCATGATATTTGGCTTGAT
TTTTCGGGCTGTGGCCTTTGAATTTCGGGAGCATTCGACAAACAAAGTATTTTGGAACGTCGCCTTTGGAGTTGGAAGTT
TCATGGCGGCGCTGTTTCAAGGATTTGCCTTGGGCAGCATTTTAGAAGGCATTAAGGTGGATGAATCGGGTCACTTTATC
GGTAGTATGTGGGACTGGCTCGATTGGCGATCGCTCTTAGTTGCCTTGACATTAATTCAAGGTTATGTGTTGATTGGCTC
CACCTATCTCATCTTAAAAACTGAGGGAGAACTGCAAACATCCCACTACCGCACAGCAAAAATCGCTGCTTGGACAACTC
TTATCGGTGCAATCTTAATCACCATCGCCACCCCTGTTGTGTATGAAAATGCCAGGGCAAAGTTATTTCACCAACCAGAA
GTGTATCTATTTTCACTTATTCCCGTGCTAGGTGTGCTGCTAATTGGCTTATTGATTCAAAGCCTGAACCGCAAAGCAGA
AACTACTCCCCTGGTTTGGACAGTGCTGCTTTTTCTACTTACCTTTGTGGGCTTGGGATTAGTTGTTTTTCCCTATATCA
TCCCCCCAGGTATCACCATTTATCAAGCAGCCGCAGCACCTAGTGCGTTAGTGTTCATGATTATCTTCATTGGATTTCTG
ATTCCCATTATGTTGTTCTACAACATCTACAATTACATTGTGTTTCGCGGGAAAGTCATAGGTACACATTATGGGGAATA
A

Upstream 100 bases:

>100_bases
ATTTGTTCCAGATCAACGTCCTGTGGAAGCACAGCAGTAAATCAATTCGCAATAGCCTGCGGCAAGGCTAACGCCAACGC
AATTTGCAATAAAGAGTGCT

Downstream 100 bases:

>100_bases
GTTAGGACTTACGCGTGAAAACGCAAGATCAAGGGTTTGGAGAAGGGTATAGGGATGTAGAGGTATAAATGTTTGAAACC
CTTACACCACTGCATCCTTA

Product: cytochrome D ubiquinol oxidase chain II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MYGKSIGNCMENLEHFLAQVWFIILALFLFLYVMLDGFDLGVGILSLTSSNEERRDILMTSLGNIWDANETWLVLMGGAL
FGAFPLAYGTILNALYIPIFGMIFGLIFRAVAFEFREHSTNKVFWNVAFGVGSFMAALFQGFALGSILEGIKVDESGHFI
GSMWDWLDWRSLLVALTLIQGYVLIGSTYLILKTEGELQTSHYRTAKIAAWTTLIGAILITIATPVVYENARAKLFHQPE
VYLFSLIPVLGVLLIGLLIQSLNRKAETTPLVWTVLLFLLTFVGLGLVVFPYIIPPGITIYQAAAAPSALVFMIIFIGFL
IPIMLFYNIYNYIVFRGKVIGTHYGE

Sequences:

>Translated_346_residues
MYGKSIGNCMENLEHFLAQVWFIILALFLFLYVMLDGFDLGVGILSLTSSNEERRDILMTSLGNIWDANETWLVLMGGAL
FGAFPLAYGTILNALYIPIFGMIFGLIFRAVAFEFREHSTNKVFWNVAFGVGSFMAALFQGFALGSILEGIKVDESGHFI
GSMWDWLDWRSLLVALTLIQGYVLIGSTYLILKTEGELQTSHYRTAKIAAWTTLIGAILITIATPVVYENARAKLFHQPE
VYLFSLIPVLGVLLIGLLIQSLNRKAETTPLVWTVLLFLLTFVGLGLVVFPYIIPPGITIYQAAAAPSALVFMIIFIGFL
IPIMLFYNIYNYIVFRGKVIGTHYGE
>Mature_346_residues
MYGKSIGNCMENLEHFLAQVWFIILALFLFLYVMLDGFDLGVGILSLTSSNEERRDILMTSLGNIWDANETWLVLMGGAL
FGAFPLAYGTILNALYIPIFGMIFGLIFRAVAFEFREHSTNKVFWNVAFGVGSFMAALFQGFALGSILEGIKVDESGHFI
GSMWDWLDWRSLLVALTLIQGYVLIGSTYLILKTEGELQTSHYRTAKIAAWTTLIGAILITIATPVVYENARAKLFHQPE
VYLFSLIPVLGVLLIGLLIQSLNRKAETTPLVWTVLLFLLTFVGLGLVVFPYIIPPGITIYQAAAAPSALVFMIIFIGFL
IPIMLFYNIYNYIVFRGKVIGTHYGE

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=357, Percent_Identity=27.1708683473389, Blast_Score=128, Evalue=6e-31,
Organism=Escherichia coli, GI1787213, Length=359, Percent_Identity=24.5125348189415, Blast_Score=113, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 38619; Mature: 38619

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYGKSIGNCMENLEHFLAQVWFIILALFLFLYVMLDGFDLGVGILSLTSSNEERRDILMT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHEECCCCHHHHHHHHH
SLGNIWDANETWLVLMGGALFGAFPLAYGTILNALYIPIFGMIFGLIFRAVAFEFREHST
HHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NKVFWNVAFGVGSFMAALFQGFALGSILEGIKVDESGHFIGSMWDWLDWRSLLVALTLIQ
CEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHHHHHHHHHHHHH
GYVLIGSTYLILKTEGELQTSHYRTAKIAAWTTLIGAILITIATPVVYENARAKLFHQPE
HHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCH
VYLFSLIPVLGVLLIGLLIQSLNRKAETTPLVWTVLLFLLTFVGLGLVVFPYIIPPGITI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
YQAAAAPSALVFMIIFIGFLIPIMLFYNIYNYIVFRGKVIGTHYGE
EEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCC
>Mature Secondary Structure
MYGKSIGNCMENLEHFLAQVWFIILALFLFLYVMLDGFDLGVGILSLTSSNEERRDILMT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHEECCCCHHHHHHHHH
SLGNIWDANETWLVLMGGALFGAFPLAYGTILNALYIPIFGMIFGLIFRAVAFEFREHST
HHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NKVFWNVAFGVGSFMAALFQGFALGSILEGIKVDESGHFIGSMWDWLDWRSLLVALTLIQ
CEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHHHHHHHHHHHHH
GYVLIGSTYLILKTEGELQTSHYRTAKIAAWTTLIGAILITIATPVVYENARAKLFHQPE
HHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCH
VYLFSLIPVLGVLLIGLLIQSLNRKAETTPLVWTVLLFLLTFVGLGLVVFPYIIPPGITI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
YQAAAAPSALVFMIIFIGFLIPIMLFYNIYNYIVFRGKVIGTHYGE
EEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]