Click here to switch to the map view.

The map label for this gene is yejH [C]

Identifier: 17230443

GI number: 17230443

Start: 3590670

End: 3592223

Strand: Reverse

Name: yejH [C]

Synonym: all2951

Alternate gene names: 17230443

Gene position: 3592223-3590670 (Counterclockwise)

Preceding gene: 17230444

Following gene: 17230442

Centisome position: 56.01

GC content: 45.05

Gene sequence:

>1554_bases
ATGGCTCGCACTCCCACCTTAAGCTACGATCGCGGTACACTAATTCTGCATCCACCACCACGGGGCAAAGCCTGGATGGA
TTATGCTACGTGGGATGATAGAGTAGAAAAATTTCGGATTCCGGCGATGAGATATCGCGCTGTGGTGGAAGCACTGCAAG
CGGAAGACGTATTTTTCATCGATGAAGCCAAGCAATTTTACCCCATAGATTTGGTTCCTAGTTTAGAAATGGAACCCTAT
CCCCATCAGAGTGAGGCTCTAGCAGCTTGGAAACTAGCGGGAAGACAGGGGGTGGTGGTGTTACCAACGGCGGCGGGAAA
GACTTATCTGGCGCAGTTGGCGATGCAGGCCACACCACGGACTACCTTAATTGTTGTGCCGACTTTAGACTTGATGCACC
AATGGTATGCTCATTTGGTGGCGGCGTTTCCCGATGCTGAAGTGGGGTTACTTGGGGGTGGTTCGCGGGATAAATCACCA
GTTTTAGTTGCAACTTACGATAGTGCAGCCATTCACGCCGAAGCCTTGGGGAATCAGTATGCTTTGATTGTCTTTGATGA
GTGCCATCATTTACCTACCGATTTTAGCAAAGTGATTGCCGAGTATGCGATCGCTCCCTACCGTCTGGGATTATCAGCCA
CCCCAGAACGCACCGATGGTAAACACGCCGATTTGAATATTCTCATTGGTCAGGAAGTGTACCGCAAACGTGCTGAAGAT
TTGGCGGGGAAGGCGCTAGCTGAACACGAAATTGTGCAAATTAAGGTGAAGTTATCCCAGCAGGAACGGGAAAGATACAA
CAATTTAATTCAAATTCGCAACGATTTTTTGCGCCAATCAAAGGTTTCCTTGGGTAGTATACAAGGCTGGCAGATGTTTG
TGCAGATGAGTGCGCGATCGCAATCTGGACGTAGAGCTATGTTAGCGCACCGTGAAGCCAAAGAAATCGCCTTGGGTACT
GATAGCAAGTTAAGAATTTTAGCTAATTTACTCGCCAAGCATTATCCAGAACGAGTGTTAATTTTCACGGCTGATAATGC
TACCGTTTATAAAATATCTCAAGATTTACTAATTCCCGCCATTACTCATCAAACACCAGTCAAAGAACGCCACGAAATTT
TAACTAAATTTCGAGAAGGTGAATATAATACTTTAGTTGCTTCCCATGTGTTGAATGAAGGTGTTGATGTGCCGGCTGCT
GCTATCGCCATTATTTTATCTGGGACAGGTTCAACTAGAGAATATATTCAACGTTTAGGAAGAATTTTACGTAAGGGAAA
TATTCAAAATAAACAGGCGATTTTATATGAAGTGATAGCGGAAGATACCAGTGAGGAAAATACTTCGGCACGGCGACGCG
GGGAAGATAAGAAAGCAAATTTACAAGTAGTTTATGGCAGTGGTAAGGGAACAACCGCTAAAGCTGCCGAGCAAATAGAA
ATCAATTATGTAGTCGATAATTCATCAGCTAACAACCAGGGAAATGCTACCAACGGAACTCCTCAGCCATCGCCTAAACG
GCGAAGAAATAATACCAAAAAGACTGAAGATTGA

Upstream 100 bases:

>100_bases
GCAGGGGAGGGGTTCTTCTTGGAACACGGAATTGGTATTCTAGTATCAGTTACCATCACCCCTTATTCTTAGAGAGGTTC
CCAAATTCCCCAATTTTCCA

Downstream 100 bases:

>100_bases
TCAGAAAACCATAGATTTAACTAATGAATTAATCAGTTGTTTTCAAGCAGCACAAGGTAAGACTCAAGGCTTTTTAGAAA
ATCAACTTTTGGATTTAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: DNA Repair Helicase; Type III Restriction Res Subunit; Helicase Domain-Containing Protein; Helicase Domain Protein; ATP-Dependent DNA Helicase; DNA Repair Helicase RAD; Type III Restriction Res Subunit Family; DNA Repair Helicase Rad; DNA Repair Protein Rad; Superfamily II DNA/RNA Helicase; Helicase; DNA Repair Protein; DNA Repair Protein RAD; DNA/RNA Helicase; DNA Helicase; DNA/RNA Helicase Superfamily II; Helicase-Like Protein; Helicase Protein; ATP-Dependent Helicase; DNA Or RNA Helicase Of Superfamily II; DNA/RNA Repair Helicase; Helicase DNA Repair; Helicase DNA Repair Rad; XPB/RAD25-Related Helicase; DEAD/DEAH Box Helicase-Like; DNA-Helicase; DNA Or RNA Helicase Of Superfamily Protein II; DEAD/DEAH Box Helicase; Helicase ATP-Dependent; DNA Or RNA Helicase; RAD25-Type DNA Repair Helicase; DNA Repair Related Protein; Restriction; Restriction Endonuclease Family Protein; Helicase ATP-Dependent Intein-Containing; DNA-Repair Protein; DEAD/DEAH Box Helicase Domain-Containing Protein; RNA Polymerase Sigma

Number of amino acids: Translated: 517; Mature: 516

Protein sequence:

>517_residues
MARTPTLSYDRGTLILHPPPRGKAWMDYATWDDRVEKFRIPAMRYRAVVEALQAEDVFFIDEAKQFYPIDLVPSLEMEPY
PHQSEALAAWKLAGRQGVVVLPTAAGKTYLAQLAMQATPRTTLIVVPTLDLMHQWYAHLVAAFPDAEVGLLGGGSRDKSP
VLVATYDSAAIHAEALGNQYALIVFDECHHLPTDFSKVIAEYAIAPYRLGLSATPERTDGKHADLNILIGQEVYRKRAED
LAGKALAEHEIVQIKVKLSQQERERYNNLIQIRNDFLRQSKVSLGSIQGWQMFVQMSARSQSGRRAMLAHREAKEIALGT
DSKLRILANLLAKHYPERVLIFTADNATVYKISQDLLIPAITHQTPVKERHEILTKFREGEYNTLVASHVLNEGVDVPAA
AIAIILSGTGSTREYIQRLGRILRKGNIQNKQAILYEVIAEDTSEENTSARRRGEDKKANLQVVYGSGKGTTAKAAEQIE
INYVVDNSSANNQGNATNGTPQPSPKRRRNNTKKTED

Sequences:

>Translated_517_residues
MARTPTLSYDRGTLILHPPPRGKAWMDYATWDDRVEKFRIPAMRYRAVVEALQAEDVFFIDEAKQFYPIDLVPSLEMEPY
PHQSEALAAWKLAGRQGVVVLPTAAGKTYLAQLAMQATPRTTLIVVPTLDLMHQWYAHLVAAFPDAEVGLLGGGSRDKSP
VLVATYDSAAIHAEALGNQYALIVFDECHHLPTDFSKVIAEYAIAPYRLGLSATPERTDGKHADLNILIGQEVYRKRAED
LAGKALAEHEIVQIKVKLSQQERERYNNLIQIRNDFLRQSKVSLGSIQGWQMFVQMSARSQSGRRAMLAHREAKEIALGT
DSKLRILANLLAKHYPERVLIFTADNATVYKISQDLLIPAITHQTPVKERHEILTKFREGEYNTLVASHVLNEGVDVPAA
AIAIILSGTGSTREYIQRLGRILRKGNIQNKQAILYEVIAEDTSEENTSARRRGEDKKANLQVVYGSGKGTTAKAAEQIE
INYVVDNSSANNQGNATNGTPQPSPKRRRNNTKKTED
>Mature_516_residues
ARTPTLSYDRGTLILHPPPRGKAWMDYATWDDRVEKFRIPAMRYRAVVEALQAEDVFFIDEAKQFYPIDLVPSLEMEPYP
HQSEALAAWKLAGRQGVVVLPTAAGKTYLAQLAMQATPRTTLIVVPTLDLMHQWYAHLVAAFPDAEVGLLGGGSRDKSPV
LVATYDSAAIHAEALGNQYALIVFDECHHLPTDFSKVIAEYAIAPYRLGLSATPERTDGKHADLNILIGQEVYRKRAEDL
AGKALAEHEIVQIKVKLSQQERERYNNLIQIRNDFLRQSKVSLGSIQGWQMFVQMSARSQSGRRAMLAHREAKEIALGTD
SKLRILANLLAKHYPERVLIFTADNATVYKISQDLLIPAITHQTPVKERHEILTKFREGEYNTLVASHVLNEGVDVPAAA
IAIILSGTGSTREYIQRLGRILRKGNIQNKQAILYEVIAEDTSEENTSARRRGEDKKANLQVVYGSGKGTTAKAAEQIEI
NYVVDNSSANNQGNATNGTPQPSPKRRRNNTKKTED

Specific function: Unknown

COG id: COG1061

COG function: function code KL; DNA or RNA helicases of superfamily II

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI4557563, Length=411, Percent_Identity=26.7639902676399, Blast_Score=103, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17556358, Length=420, Percent_Identity=25, Blast_Score=112, Evalue=6e-25,
Organism=Saccharomyces cerevisiae, GI6322048, Length=410, Percent_Identity=24.1463414634146, Blast_Score=110, Evalue=5e-25,
Organism=Drosophila melanogaster, GI221331068, Length=444, Percent_Identity=25.4504504504505, Blast_Score=103, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24662247, Length=444, Percent_Identity=25.4504504504505, Blast_Score=103, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57642; Mature: 57511

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: PS00201 FLAVODOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARTPTLSYDRGTLILHPPPRGKAWMDYATWDDRVEKFRIPAMRYRAVVEALQAEDVFFI
CCCCCCCCCCCCEEEECCCCCCCCEEEECCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEE
DEAKQFYPIDLVPSLEMEPYPHQSEALAAWKLAGRQGVVVLPTAAGKTYLAQLAMQATPR
ECCCCEECEEECCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCC
TTLIVVPTLDLMHQWYAHLVAAFPDAEVGLLGGGSRDKSPVLVATYDSAAIHAEALGNQY
EEEEEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEECCCHHHHHHHCCCEE
ALIVFDECHHLPTDFSKVIAEYAIAPYRLGLSATPERTDGKHADLNILIGQEVYRKRAED
EEEEEECCCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHH
LAGKALAEHEIVQIKVKLSQQERERYNNLIQIRNDFLRQSKVSLGSIQGWQMFVQMSARS
HHHHHHCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHEEEHHCC
QSGRRAMLAHREAKEIALGTDSKLRILANLLAKHYPERVLIFTADNATVYKISQDLLIPA
CCCCCHHHHHHHHHHEECCCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEEECCCCEEEE
ITHQTPVKERHEILTKFREGEYNTLVASHVLNEGVDVPAAAIAIILSGTGSTREYIQRLG
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHH
RILRKGNIQNKQAILYEVIAEDTSEENTSARRRGEDKKANLQVVYGSGKGTTAKAAEQIE
HHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEEE
INYVVDNSSANNQGNATNGTPQPSPKRRRNNTKKTED
EEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC
>Mature Secondary Structure 
ARTPTLSYDRGTLILHPPPRGKAWMDYATWDDRVEKFRIPAMRYRAVVEALQAEDVFFI
CCCCCCCCCCCEEEECCCCCCCCEEEECCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEE
DEAKQFYPIDLVPSLEMEPYPHQSEALAAWKLAGRQGVVVLPTAAGKTYLAQLAMQATPR
ECCCCEECEEECCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCC
TTLIVVPTLDLMHQWYAHLVAAFPDAEVGLLGGGSRDKSPVLVATYDSAAIHAEALGNQY
EEEEEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEECCCHHHHHHHCCCEE
ALIVFDECHHLPTDFSKVIAEYAIAPYRLGLSATPERTDGKHADLNILIGQEVYRKRAED
EEEEEECCCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHH
LAGKALAEHEIVQIKVKLSQQERERYNNLIQIRNDFLRQSKVSLGSIQGWQMFVQMSARS
HHHHHHCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHEEEHHCC
QSGRRAMLAHREAKEIALGTDSKLRILANLLAKHYPERVLIFTADNATVYKISQDLLIPA
CCCCCHHHHHHHHHHEECCCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEEECCCCEEEE
ITHQTPVKERHEILTKFREGEYNTLVASHVLNEGVDVPAAAIAIILSGTGSTREYIQRLG
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHH
RILRKGNIQNKQAILYEVIAEDTSEENTSARRRGEDKKANLQVVYGSGKGTTAKAAEQIE
HHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEEE
INYVVDNSSANNQGNATNGTPQPSPKRRRNNTKKTED
EEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA