| Definition | Nostoc sp. PCC 7120, complete genome. |
|---|---|
| Accession | NC_003272 |
| Length | 6,413,771 |
Click here to switch to the map view.
The map label for this gene is hsdM [H]
Identifier: 17230180
GI number: 17230180
Start: 3278898
End: 3280871
Strand: Reverse
Name: hsdM [H]
Synonym: all2688
Alternate gene names: 17230180
Gene position: 3280871-3278898 (Counterclockwise)
Preceding gene: 17230181
Following gene: 17230179
Centisome position: 51.15
GC content: 44.58
Gene sequence:
>1974_bases ATGCGGAACTTTGCGACACAATCAGGTAAAAGCAAGGGTCAATTTTATACTCCGGCGGAAGTTTCCCGTGTCATCTCTCA AGTTATTGGGGTTAATTCAGCCCAAAGCCAGAGTCAGACGATTTATGACCCGACTTGTGGTAGTGGTTCTCTGTTGTTAA AGTCGGCGGATGAAGCGGAACGGGGCTTAACTATCTACGGGCAAGAGATGGACAACGCTACCCGCGCCTTGGCTCGGATG AACATGATCCTGCACGGACACCCTACTGCTGAGATTTGGCAGGATAATACTTTATCAAGTCCTTACTTCAAAGATGCGGA TGGTAGCCTGAAAACTTTTGATTTTGCTGTGGCTAATCCTCCCTTTTCCTCCAAGGCTTGGAGTAATGGACTTGATCTAG CCAAGGATGAGTTTCAACGGTTTGATAACTATGGGATTCCTCCAGCTAAAAATGGGGACTATGCTTTTTTGCTGCACATG GTTTGCTCTCTGAAAAGTAATGGCAAAGGAGCGATTATTCTACCGCATGGGGTGCTGTTTCGGGGGAATGCGGAGGCAGA AATTCGGAAAAATCTGATTAGTAAGGGCATTATTAAAGGGATTATTGGGCTACCGCCGAACTTGTTTTATGGCACAGGGA TACCAGCCTGCATTATTGTGTTAGACAAAGAAGATGCCGAGAATCGCCAAGGCATTTTTATGATTGATGCCAGCAAGGGA TTTGTTAAAGACGGCAATAAAAACCGTCTGCGGGAGCAGGACATTCATAAGATTGTTGATGTCTTCAACAAACAGCTTGA GGTGGCGAAGTATTCGCGGATGGTTCCAGTTGAGGAAATTGCGGGGAATGAGTACAACCTGAATATTCCGCGCTATATCG ACTCTCAGGAAGAGGAAGATATTCAGGATATTGAGGCGCATCTGTTGGGGGGGATACCCAAGCGAGATATTGAGGCTTTG AGCGATTACTGGCAGGTTTACCCGACGCTGCAACAGGAATTATTTGAGGCGGCCGATCGCCCAGGATACCTGATGCTCAA AATTCCAGGCTCAGAAGTCAAAGCTTGTATTTTTGCCCATCCTGAATTTATCAGCTATGGGAAAGACATTCAAGCGGTTT TTGAGACGTGGCAAGGGAAACACACGCCTTTGCTGAAAGCCATCCAGCCGGGAGATAAGCCCAAGGCGATTATTTACGCG CTCTCGGAAGACTTGCTGCAAGGGTTTACGGGTAAAAGTCTGATTGATAAATACGATGTTTACCAGCACCTAATGACTTA TTGGGTGGAAAGTATGAAAGATGATGTTTATATTTTGGTTGAGGATGGCTGGAAGGCAGAACTGAAAGCGGTGACGAATA AGAAAGGTGTAGTAACAGATTATGTCTGCGAACTGATTCCGAAGGAGTTGATGATTAATCGCTATTTTCAAACTGAACAG GCGGCGATCGCAACTTTGGAAACGAAAAAAGATGAAATTGTTCGCCAGCAGGAAGAACTGCAAGAAGAACATGGCGGTGA TGATGGTTTGCTGGAGGAAGTCACTAACGATAGTGGGAAAATCACTAAAGCGAACATTAATCTTCGGATTAAGGAAATTC AGAAAAATCCTCTTTTTGCGGATGCGGATGAGTTGAAAGTTCTAAAGTCTTATTTGAAATTGATTGAGTCAGAAGCGGAA CTTAATAAAGAAATTAGAGAGGCTACCCAATCTTTACATAATCAGGTGTTAAAAAAATATCAGGAATTAACAGAGGATGA AATTAAAAACCTAGTAGTTGATGATAAGTGGATGCAGACGTTAAGACAGGCGATCGCTTCTGAGATGGATCAGATTTCGC AACGGTTGGCGCAGCGAATTCAGGAATTGGCTGAACGGTATGATACACCTTTACCGGAGTTGACGAGTCGGGTGGATGAG TTGACGACTAAGGTTGAGGGGCATCTTCAGCAGATGGGGATTGTGTGGTTATGA
Upstream 100 bases:
>100_bases GCTTTCCAACTTGGTGGCGATTTTTGAAACCCCTGCTTTGAATTTTAGTAAGAATCGTGCTGATGGTGATGATATTTTAG GCGATGCCTATGAGTAACTG
Downstream 100 bases:
>100_bases AAACAAATTTTCCTGAAAGCTATCAAAAAACAGAGTTTGGAATCGTACCTAATGATTGGAAGATAAGAAAGTTAGTAGAA TGTTGTAATAAAATTACAGA
Product: type I restriction enzyme, modification chain
Products: NA
Alternate protein names: M.EcoR124II [H]
Number of amino acids: Translated: 657; Mature: 657
Protein sequence:
>657_residues MRNFATQSGKSKGQFYTPAEVSRVISQVIGVNSAQSQSQTIYDPTCGSGSLLLKSADEAERGLTIYGQEMDNATRALARM NMILHGHPTAEIWQDNTLSSPYFKDADGSLKTFDFAVANPPFSSKAWSNGLDLAKDEFQRFDNYGIPPAKNGDYAFLLHM VCSLKSNGKGAIILPHGVLFRGNAEAEIRKNLISKGIIKGIIGLPPNLFYGTGIPACIIVLDKEDAENRQGIFMIDASKG FVKDGNKNRLREQDIHKIVDVFNKQLEVAKYSRMVPVEEIAGNEYNLNIPRYIDSQEEEDIQDIEAHLLGGIPKRDIEAL SDYWQVYPTLQQELFEAADRPGYLMLKIPGSEVKACIFAHPEFISYGKDIQAVFETWQGKHTPLLKAIQPGDKPKAIIYA LSEDLLQGFTGKSLIDKYDVYQHLMTYWVESMKDDVYILVEDGWKAELKAVTNKKGVVTDYVCELIPKELMINRYFQTEQ AAIATLETKKDEIVRQQEELQEEHGGDDGLLEEVTNDSGKITKANINLRIKEIQKNPLFADADELKVLKSYLKLIESEAE LNKEIREATQSLHNQVLKKYQELTEDEIKNLVVDDKWMQTLRQAIASEMDQISQRLAQRIQELAERYDTPLPELTSRVDE LTTKVEGHLQQMGIVWL
Sequences:
>Translated_657_residues MRNFATQSGKSKGQFYTPAEVSRVISQVIGVNSAQSQSQTIYDPTCGSGSLLLKSADEAERGLTIYGQEMDNATRALARM NMILHGHPTAEIWQDNTLSSPYFKDADGSLKTFDFAVANPPFSSKAWSNGLDLAKDEFQRFDNYGIPPAKNGDYAFLLHM VCSLKSNGKGAIILPHGVLFRGNAEAEIRKNLISKGIIKGIIGLPPNLFYGTGIPACIIVLDKEDAENRQGIFMIDASKG FVKDGNKNRLREQDIHKIVDVFNKQLEVAKYSRMVPVEEIAGNEYNLNIPRYIDSQEEEDIQDIEAHLLGGIPKRDIEAL SDYWQVYPTLQQELFEAADRPGYLMLKIPGSEVKACIFAHPEFISYGKDIQAVFETWQGKHTPLLKAIQPGDKPKAIIYA LSEDLLQGFTGKSLIDKYDVYQHLMTYWVESMKDDVYILVEDGWKAELKAVTNKKGVVTDYVCELIPKELMINRYFQTEQ AAIATLETKKDEIVRQQEELQEEHGGDDGLLEEVTNDSGKITKANINLRIKEIQKNPLFADADELKVLKSYLKLIESEAE LNKEIREATQSLHNQVLKKYQELTEDEIKNLVVDDKWMQTLRQAIASEMDQISQRLAQRIQELAERYDTPLPELTSRVDE LTTKVEGHLQQMGIVWL >Mature_657_residues MRNFATQSGKSKGQFYTPAEVSRVISQVIGVNSAQSQSQTIYDPTCGSGSLLLKSADEAERGLTIYGQEMDNATRALARM NMILHGHPTAEIWQDNTLSSPYFKDADGSLKTFDFAVANPPFSSKAWSNGLDLAKDEFQRFDNYGIPPAKNGDYAFLLHM VCSLKSNGKGAIILPHGVLFRGNAEAEIRKNLISKGIIKGIIGLPPNLFYGTGIPACIIVLDKEDAENRQGIFMIDASKG FVKDGNKNRLREQDIHKIVDVFNKQLEVAKYSRMVPVEEIAGNEYNLNIPRYIDSQEEEDIQDIEAHLLGGIPKRDIEAL SDYWQVYPTLQQELFEAADRPGYLMLKIPGSEVKACIFAHPEFISYGKDIQAVFETWQGKHTPLLKAIQPGDKPKAIIYA LSEDLLQGFTGKSLIDKYDVYQHLMTYWVESMKDDVYILVEDGWKAELKAVTNKKGVVTDYVCELIPKELMINRYFQTEQ AAIATLETKKDEIVRQQEELQEEHGGDDGLLEEVTNDSGKITKANINLRIKEIQKNPLFADADELKVLKSYLKLIESEAE LNKEIREATQSLHNQVLKKYQELTEDEIKNLVVDDKWMQTLRQAIASEMDQISQRLAQRIQELAERYDTPLPELTSRVDE LTTKVEGHLQQMGIVWL
Specific function: Methylation of specific adenine residues; required for both restriction and modification activities. The EcoR124/3 I enzyme recognizes 5'-GAAN(7)RTCG-3' [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1790808, Length=249, Percent_Identity=25.7028112449799, Blast_Score=79, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022749 - InterPro: IPR003356 - InterPro: IPR002052 - InterPro: IPR002296 - InterPro: IPR004546 [H]
Pfam domain/function: PF12161 HsdM_N; PF02384 N6_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 74209; Mature: 74209
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNFATQSGKSKGQFYTPAEVSRVISQVIGVNSAQSQSQTIYDPTCGSGSLLLKSADEAE CCCCCCCCCCCCCCEECHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEECCCHHH RGLTIYGQEMDNATRALARMNMILHGHPTAEIWQDNTLSSPYFKDADGSLKTFDFAVANP CCCEEECCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCEEEEEEECCC PFSSKAWSNGLDLAKDEFQRFDNYGIPPAKNGDYAFLLHMVCSLKSNGKGAIILPHGVLF CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCEEE RGNAEAEIRKNLISKGIIKGIIGLPPNLFYGTGIPACIIVLDKEDAENRQGIFMIDASKG ECCCHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCEEEEEEECCCCCCCCCEEEEECCCC FVKDGNKNRLREQDIHKIVDVFNKQLEVAKYSRMVPVEEIAGNEYNLNIPRYIDSQEEED CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEECCCCCCCCCCCHHH IQDIEAHLLGGIPKRDIEALSDYWQVYPTLQQELFEAADRPGYLMLKIPGSEVKACIFAH HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHCEEEEEC PEFISYGKDIQAVFETWQGKHTPLLKAIQPGDKPKAIIYALSEDLLQGFTGKSLIDKYDV HHHHHCCHHHHHHHHHHCCCCCCHHHHCCCCCCCCEEEHHHHHHHHCCCCCHHHHHHHHH YQHLMTYWVESMKDDVYILVEDGWKAELKAVTNKKGVVTDYVCELIPKELMINRYFQTEQ HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH AAIATLETKKDEIVRQQEELQEEHGGDDGLLEEVTNDSGKITKANINLRIKEIQKNPLFA HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCCCCCC DADELKVLKSYLKLIESEAELNKEIREATQSLHNQVLKKYQELTEDEIKNLVVDDKWMQT CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH LRQAIASEMDQISQRLAQRIQELAERYDTPLPELTSRVDELTTKVEGHLQQMGIVWL HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MRNFATQSGKSKGQFYTPAEVSRVISQVIGVNSAQSQSQTIYDPTCGSGSLLLKSADEAE CCCCCCCCCCCCCCEECHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEECCCHHH RGLTIYGQEMDNATRALARMNMILHGHPTAEIWQDNTLSSPYFKDADGSLKTFDFAVANP CCCEEECCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCEEEEEEECCC PFSSKAWSNGLDLAKDEFQRFDNYGIPPAKNGDYAFLLHMVCSLKSNGKGAIILPHGVLF CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCEEE RGNAEAEIRKNLISKGIIKGIIGLPPNLFYGTGIPACIIVLDKEDAENRQGIFMIDASKG ECCCHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCEEEEEEECCCCCCCCCEEEEECCCC FVKDGNKNRLREQDIHKIVDVFNKQLEVAKYSRMVPVEEIAGNEYNLNIPRYIDSQEEED CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEECCCCCCCCCCCHHH IQDIEAHLLGGIPKRDIEALSDYWQVYPTLQQELFEAADRPGYLMLKIPGSEVKACIFAH HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHCEEEEEC PEFISYGKDIQAVFETWQGKHTPLLKAIQPGDKPKAIIYALSEDLLQGFTGKSLIDKYDV HHHHHCCHHHHHHHHHHCCCCCCHHHHCCCCCCCCEEEHHHHHHHHCCCCCHHHHHHHHH YQHLMTYWVESMKDDVYILVEDGWKAELKAVTNKKGVVTDYVCELIPKELMINRYFQTEQ HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH AAIATLETKKDEIVRQQEELQEEHGGDDGLLEEVTNDSGKITKANINLRIKEIQKNPLFA HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCCCCCC DADELKVLKSYLKLIESEAELNKEIREATQSLHNQVLKKYQELTEDEIKNLVVDDKWMQT CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH LRQAIASEMDQISQRLAQRIQELAERYDTPLPELTSRVDELTTKVEGHLQQMGIVWL HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2784505 [H]