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The map label for this gene is pecC

Identifier: 17228021

GI number: 17228021

Start: 617607

End: 618443

Strand: Direct

Name: pecC

Synonym: alr0525

Alternate gene names: 17228021

Gene position: 617607-618443 (Clockwise)

Preceding gene: 17228020

Following gene: 17228022

Centisome position: 9.63

GC content: 41.46

Gene sequence:

>837_bases
ATGAGTAGTTCAGTCGCAGAAAGGCTAGCAATTAGAGATGCCATCGGCAATAAAGTTGAACTGCGCCAAAATTGGAGCGA
AGATGATTTACAAAAAGTATTCCGGGCTGCTTATGAACAAATATTTGGACGGCAAGGAATATATGCTAGCCAAAAATTTA
CGAGTGCGGAAGCTTTGTTAAGAAATGGCAAAATCAGTGTGCGGCAATTTGTAGAGATTTTAGCCAAATCTGAATTTTAC
AAAGAATGCTTTTTTTATAAAAACTCTCAAGTGCGTTTGATTGAATTAAACTATAAGCACTTACTGGGACGCGCACCGTA
CGATCAATCAGAGATTGCTGATCATGTAGACATTTATGCTGCTCGTGGCTACGATGCTGACATTGATGCTTACATTTACA
GTTCAGAATACGAAAATGCTTTTGGTAATTCTATTGTTCCTTATTACCGAGGATTCCAATCAATCCCTGGAATGAAAACA
GTAGGATTTAATCGTATATGTGAGCTTTATCGTGGTCGGGGTAATAGCGATAACGCACAAATGGGACGGACAAATTCTCG
TTTACGAACAAAAGTTTCCCTGAATTTGCCTAATGGAATTTTGCCACCAACTTCCGCCGGGACAAACTTTGTTTCCGCAG
CACCGACGTTAATCAGTTCTGCGACGAAGGGTGATAATCGGATGTTTGTGATTGAAGCGATCGCCGGTGGATTGAATACA
AACGTAGCAGTCCGTCGCAGCCGCCAGGTTTACACCGTTTCCTATGAAAGACTCTCCGCCACTTACCAAGAAATTCATAA
GCGTGGTGGAAAGATAGTCAAGATTTCCCAAGTGTAG

Upstream 100 bases:

>100_bases
TGAGTTACTTTGTAACTGCTTTGAACATAATTGCAGCATTTTCTAATTCCTAAGACCCAAATTTATAATCAAAAAAATTG
CGGAAGGAGCGTTTATCAAA

Downstream 100 bases:

>100_bases
AAATGGTTGCTAGATACCCAACTTCTTGAAGAAGTGGGGTATCTGAGTAAATTTTGAATTTCGGAGCAAAGCAACGTGAC
TGCTGAACCAATTCTTTCTC

Product: phycoerythrocyanin-associated rod linker protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MSSSVAERLAIRDAIGNKVELRQNWSEDDLQKVFRAAYEQIFGRQGIYASQKFTSAEALLRNGKISVRQFVEILAKSEFY
KECFFYKNSQVRLIELNYKHLLGRAPYDQSEIADHVDIYAARGYDADIDAYIYSSEYENAFGNSIVPYYRGFQSIPGMKT
VGFNRICELYRGRGNSDNAQMGRTNSRLRTKVSLNLPNGILPPTSAGTNFVSAAPTLISSATKGDNRMFVIEAIAGGLNT
NVAVRRSRQVYTVSYERLSATYQEIHKRGGKIVKISQV

Sequences:

>Translated_278_residues
MSSSVAERLAIRDAIGNKVELRQNWSEDDLQKVFRAAYEQIFGRQGIYASQKFTSAEALLRNGKISVRQFVEILAKSEFY
KECFFYKNSQVRLIELNYKHLLGRAPYDQSEIADHVDIYAARGYDADIDAYIYSSEYENAFGNSIVPYYRGFQSIPGMKT
VGFNRICELYRGRGNSDNAQMGRTNSRLRTKVSLNLPNGILPPTSAGTNFVSAAPTLISSATKGDNRMFVIEAIAGGLNT
NVAVRRSRQVYTVSYERLSATYQEIHKRGGKIVKISQV
>Mature_277_residues
SSSVAERLAIRDAIGNKVELRQNWSEDDLQKVFRAAYEQIFGRQGIYASQKFTSAEALLRNGKISVRQFVEILAKSEFYK
ECFFYKNSQVRLIELNYKHLLGRAPYDQSEIADHVDIYAARGYDADIDAYIYSSEYENAFGNSIVPYYRGFQSIPGMKTV
GFNRICELYRGRGNSDNAQMGRTNSRLRTKVSLNLPNGILPPTSAGTNFVSAAPTLISSATKGDNRMFVIEAIAGGLNTN
VAVRRSRQVYTVSYERLSATYQEIHKRGGKIVKISQV

Specific function: Rod linker protein, associated with phycoerythrocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to medi

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=This protein occurs in the rod, it is associated with phycoerythrocyanin

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PBS-linker domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PYR2_NOSS1 (P31329)

Other databases:

- EMBL:   AF178757
- EMBL:   BA000019
- PIR:   AD1872
- PIR:   C41841
- RefSeq:   NP_484569.1
- STRING:   P31329
- GeneID:   1104121
- GenomeReviews:   BA000019_GR
- KEGG:   ana:alr0525
- NMPDR:   fig|103690.1.peg.836
- eggNOG:   NOG71226
- HOGENOM:   HBG287806
- OMA:   FNRICEL
- ProtClustDB:   CLSK285772
- BioCyc:   NSP103690:ALR0525-MONOMER
- GO:   GO:0030089
- GO:   GO:0015979
- InterPro:   IPR001297
- InterPro:   IPR016470
- InterPro:   IPR008213
- PIRSF:   PIRSF005898
- ProDom:   PD000852

Pfam domain/function: PF01383 CpcD; PF00427 PBS_linker_poly

EC number: NA

Molecular weight: Translated: 31296; Mature: 31165

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS51441 CPCD_LIKE; PS51445 PBS_LINKER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSVAERLAIRDAIGNKVELRQNWSEDDLQKVFRAAYEQIFGRQGIYASQKFTSAEALL
CCHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
RNGKISVRQFVEILAKSEFYKECFFYKNSQVRLIELNYKHLLGRAPYDQSEIADHVDIYA
HCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCCCCCCHHHHHHHHHEEE
ARGYDADIDAYIYSSEYENAFGNSIVPYYRGFQSIPGMKTVGFNRICELYRGRGNSDNAQ
ECCCCCCCEEEEECCHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCC
MGRTNSRLRTKVSLNLPNGILPPTSAGTNFVSAAPTLISSATKGDNRMFVIEAIAGGLNT
CCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCC
NVAVRRSRQVYTVSYERLSATYQEIHKRGGKIVKISQV
CEEEEECCEEEEEHHHHHHHHHHHHHHCCCCEEEEECC
>Mature Secondary Structure 
SSSVAERLAIRDAIGNKVELRQNWSEDDLQKVFRAAYEQIFGRQGIYASQKFTSAEALL
CHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
RNGKISVRQFVEILAKSEFYKECFFYKNSQVRLIELNYKHLLGRAPYDQSEIADHVDIYA
HCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCCCCCCHHHHHHHHHEEE
ARGYDADIDAYIYSSEYENAFGNSIVPYYRGFQSIPGMKTVGFNRICELYRGRGNSDNAQ
ECCCCCCCEEEEECCHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCC
MGRTNSRLRTKVSLNLPNGILPPTSAGTNFVSAAPTLISSATKGDNRMFVIEAIAGGLNT
CCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCC
NVAVRRSRQVYTVSYERLSATYQEIHKRGGKIVKISQV
CEEEEECCEEEEEHHHHHHHHHHHHHHCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1556083; 11759840; 1743523