Click here to switch to the map view.

The map label for this gene is pecA [H]

Identifier: 17228020

GI number: 17228020

Start: 616972

End: 617460

Strand: Direct

Name: pecA [H]

Synonym: alr0524

Alternate gene names: 17228020

Gene position: 616972-617460 (Clockwise)

Preceding gene: 17228019

Following gene: 17228021

Centisome position: 9.62

GC content: 43.35

Gene sequence:

>489_bases
ATGAAAACACCTTTGACCGAAGCGATCTCTGCTGCTGATGTTCGTGGTTCCTACCTCAGCAACACTGAAATGCAAGCAGT
TTTTGGTCGTTTTAACCGCGCTCGCGCTGGTTTAGCGGCTGCTCAAGCATTTTCTAATAATGGCAAAAAATGGGCAGAAG
CAGCAGCAAATCATGTTTATCAAAAATTCCCTTACACCACTCAAATGAGTGGGCCTCAATATGCTTCCACTCCAGAAGGT
AAATCCAAGTGTGTTCGTGATATTGACCACTATCTTCGTACTATTAGCTATTGCTGCGTAGTCGGTGGTACTGGCCCCTT
AGATGAATATGTAGTATCTGGTTTAAGCGAACTCAACAGCGCCCTTGGTTTATCTCCTAGCTGGTATGTAGCTGCACTAG
AATTTGTCCGCGATAATCACGGTTTAAATGGTGATGTTGCAGGTGAAGCTAATATCTACCTGAACTATGCAATTAACGCT
TTAAGTTAA

Upstream 100 bases:

>100_bases
TCGCGCTGCTTCTGCGGTTGTTTAAATAGATGTTTTTTCCAAAACTTTTTTCAAACTGACTGTTAGTAATTAATCGCAAA
TCAAGGAGATTAGGAGAAGT

Downstream 100 bases:

>100_bases
GACAAAGCTTGTGGGTCTTGGGAAATAGGTAATTGCTCAATTTAAGTGAGTTACTTTGTAACTGCTTTGAACATAATTGC
AGCATTTTCTAATTCCTAAG

Product: phycoerythrocyanin alpha chain

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MKTPLTEAISAADVRGSYLSNTEMQAVFGRFNRARAGLAAAQAFSNNGKKWAEAAANHVYQKFPYTTQMSGPQYASTPEG
KSKCVRDIDHYLRTISYCCVVGGTGPLDEYVVSGLSELNSALGLSPSWYVAALEFVRDNHGLNGDVAGEANIYLNYAINA
LS

Sequences:

>Translated_162_residues
MKTPLTEAISAADVRGSYLSNTEMQAVFGRFNRARAGLAAAQAFSNNGKKWAEAAANHVYQKFPYTTQMSGPQYASTPEG
KSKCVRDIDHYLRTISYCCVVGGTGPLDEYVVSGLSELNSALGLSPSWYVAALEFVRDNHGLNGDVAGEANIYLNYAINA
LS
>Mature_162_residues
MKTPLTEAISAADVRGSYLSNTEMQAVFGRFNRARAGLAAAQAFSNNGKKWAEAAANHVYQKFPYTTQMSGPQYASTPEG
KSKCVRDIDHYLRTISYCCVVGGTGPLDEYVVSGLSELNSALGLSPSWYVAALEFVRDNHGLNGDVAGEANIYLNYAINA
LS

Specific function: Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Forms the periphery of the phycobilisome rod [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phycobiliprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009050
- InterPro:   IPR012128 [H]

Pfam domain/function: PF00502 Phycobilisome [H]

EC number: NA

Molecular weight: Translated: 17455; Mature: 17455

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTPLTEAISAADVRGSYLSNTEMQAVFGRFNRARAGLAAAQAFSNNGKKWAEAAANHVY
CCCCHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
QKFPYTTQMSGPQYASTPEGKSKCVRDIDHYLRTISYCCVVGGTGPLDEYVVSGLSELNS
HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
ALGLSPSWYVAALEFVRDNHGLNGDVAGEANIYLNYAINALS
HHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECC
>Mature Secondary Structure
MKTPLTEAISAADVRGSYLSNTEMQAVFGRFNRARAGLAAAQAFSNNGKKWAEAAANHVY
CCCCHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
QKFPYTTQMSGPQYASTPEGKSKCVRDIDHYLRTISYCCVVGGTGPLDEYVVSGLSELNS
HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
ALGLSPSWYVAALEFVRDNHGLNGDVAGEANIYLNYAINALS
HHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2121619; 6411579; 2106585 [H]