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The map label for this gene is rimN [H]

Identifier: 17227612

GI number: 17227612

Start: 118415

End: 118999

Strand: Direct

Name: rimN [H]

Synonym: alr0116

Alternate gene names: 17227612

Gene position: 118415-118999 (Clockwise)

Preceding gene: 17227611

Following gene: 17227613

Centisome position: 1.85

GC content: 46.15

Gene sequence:

>585_bases
ATGACTAGGGTTTCCTTAGAAACATTAATAGCTGGTGTGGGTGCTGGCGGTTTAGTTAGTTTCCCTACAGATACAGTGCC
GGCGCTGGCGACTCTACCAGAGCAAGCAGAATTGATTTTTGCGGCTAAACAGCGCAGTCAGGACAAACCTCTAATTTTGA
TGGGTGCGAGTGCAGAAGATTTGTGGCCTTATGTAGAAGGTCGTGAGCAAGATAAGCAAATTTGGGAACAAGTTGTCAGT
CAATATTGGCCTGGAGCATTGACATTAGTAGTACCAGCGAGTAAGCGCGTTCCCGAAGTGATGAATCCGATTGATCCCAC
AACTATTGGTATTCGTGTGCCTAAGAGTGCGATCGCTCAAAAGATTTTGTCACAAACTGGGCCTCTTGCCACGACTAGTG
CTAATTTCTCAGGACAGCCAGCTTTACTAACAATGGCAGAGATTGATGCTCAGTTTCCCACAGTGTTGACACTGGAATCA
ACAGCAGTGGAAGCGGAGGGAATTGGCTTACCTTCTACTGTTGCCAAATGGACAGGTGAAAATTGGCAAATCTTGCGGCA
AGGAGCAGTAAGTTTAGAGTTTTAG

Upstream 100 bases:

>100_bases
GCGTTTCGCTTTAGCACAGATTCAGTGATGAGTTTTAAGTAGTATTCTTGAGTAAGAATTGCTTAAGTGTTAATTTGTAA
TTGATAATTACAAGTTATTT

Downstream 100 bases:

>100_bases
GGCATAAAAAGGAGGAAAGTAGGGGAATATGGGGCAAAACGAAAAACTGAGAAAAGAACTATTTCCCTTTTTCTCCCTGC
TCTCTACCTCTCTCCCCAGC

Product: hypothetical protein

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN [H]

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MTRVSLETLIAGVGAGGLVSFPTDTVPALATLPEQAELIFAAKQRSQDKPLILMGASAEDLWPYVEGREQDKQIWEQVVS
QYWPGALTLVVPASKRVPEVMNPIDPTTIGIRVPKSAIAQKILSQTGPLATTSANFSGQPALLTMAEIDAQFPTVLTLES
TAVEAEGIGLPSTVAKWTGENWQILRQGAVSLEF

Sequences:

>Translated_194_residues
MTRVSLETLIAGVGAGGLVSFPTDTVPALATLPEQAELIFAAKQRSQDKPLILMGASAEDLWPYVEGREQDKQIWEQVVS
QYWPGALTLVVPASKRVPEVMNPIDPTTIGIRVPKSAIAQKILSQTGPLATTSANFSGQPALLTMAEIDAQFPTVLTLES
TAVEAEGIGLPSTVAKWTGENWQILRQGAVSLEF
>Mature_193_residues
TRVSLETLIAGVGAGGLVSFPTDTVPALATLPEQAELIFAAKQRSQDKPLILMGASAEDLWPYVEGREQDKQIWEQVVSQ
YWPGALTLVVPASKRVPEVMNPIDPTTIGIRVPKSAIAQKILSQTGPLATTSANFSGQPALLTMAEIDAQFPTVLTLEST
AVEAEGIGLPSTVAKWTGENWQILRQGAVSLEF

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine [H]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Homo sapiens, GI58761510, Length=153, Percent_Identity=31.3725490196078, Blast_Score=65, Evalue=3e-11,
Organism=Escherichia coli, GI2367210, Length=140, Percent_Identity=32.1428571428571, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 20754; Mature: 20623

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRVSLETLIAGVGAGGLVSFPTDTVPALATLPEQAELIFAAKQRSQDKPLILMGASAED
CCCCHHHHHHHHCCCCCEEECCCCCCHHHHCCCCHHHHHHHHHHCCCCCCEEEEECCHHH
LWPYVEGREQDKQIWEQVVSQYWPGALTLVVPASKRVPEVMNPIDPTTIGIRVPKSAIAQ
HCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCCCEEEEECCHHHHHH
KILSQTGPLATTSANFSGQPALLTMAEIDAQFPTVLTLESTAVEAEGIGLPSTVAKWTGE
HHHHHCCCCEEECCCCCCCCEEEEHHHHCCCCCEEEEEECCEECCCCCCCCHHHHHHCCC
NWQILRQGAVSLEF
CHHEECCCCCCCCC
>Mature Secondary Structure 
TRVSLETLIAGVGAGGLVSFPTDTVPALATLPEQAELIFAAKQRSQDKPLILMGASAED
CCCHHHHHHHHCCCCCEEECCCCCCHHHHCCCCHHHHHHHHHHCCCCCCEEEEECCHHH
LWPYVEGREQDKQIWEQVVSQYWPGALTLVVPASKRVPEVMNPIDPTTIGIRVPKSAIAQ
HCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCCCEEEEECCHHHHHH
KILSQTGPLATTSANFSGQPALLTMAEIDAQFPTVLTLESTAVEAEGIGLPSTVAKWTGE
HHHHHCCCCEEECCCCCCCCEEEEHHHHCCCCCEEEEEECCEECCCCCCCCHHHHHHCCC
NWQILRQGAVSLEF
CHHEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA