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The map label for this gene is rzpD [H]

Identifier: 39546345

GI number: 39546345

Start: 2758957

End: 2759430

Strand: Reverse

Name: rzpD [H]

Synonym: STM2611.S

Alternate gene names: 39546345

Gene position: 2759430-2758957 (Counterclockwise)

Preceding gene: 16765933

Following gene: 16765930

Centisome position: 56.81

GC content: 51.9

Gene sequence:

>474_bases
ATGATGTTCAACTGGAAAACGATGTTTGTTGGCCTGTTGCTCGTCTCGCTAATTGTTGCCGGTCGGCTGGCAAATCACTA
CCGCAATAACGCTATCACTTACAAGTACCAGCGTGATACTGCTACTCACAACCTGAAGCTGGCGAACGAGACAATTACCG
ATATGACGAAGCGCCAGCGTGACGTTGCCGCCCTCGATGCAAAATACACAAAGGAACTAGCTGATGCACAAAACAGGAAT
ACTGATTTGCAGCGCCGCCTTGCTGCTGGTAGCCGGGTGCGTGTCGAAGGACGCTGTACAGTGCCAACCACAACCACAAC
CAAAACCGCCAGTACCCGCCGCGTGGGCAATGCTGCCACCGTCGAACTCTCTCCAGTTGCTGGACAAAACGTTCTCGATA
TCCGCGCCGGAATCATCAGCGATCAGGAAAAACTGAAGTATTTGCAGGAGTACATCCGGACGCAGTGCAAATAA

Upstream 100 bases:

>100_bases
CTGGCGCCGCTGATGAGTTCCTGCGCTGGAATAAGGCTGGTAGCAAGGTACTGAACGGGCTTACCCGTCGGCGTGAGGCG
GAGCGTGCTCTGTTCCTGTC

Downstream 100 bases:

>100_bases
AAAATTCCCGCAGGAGGGAAAAGGAGCTTACCTGCGGGGGAGTTTCAGAAATGCATAAACATGACAATGTCTCTGGGTCT
GCGTACTACCACATCGCGTT

Product: endopeptidase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MMFNWKTMFVGLLLVSLIVAGRLANHYRNNAITYKYQRDTATHNLKLANETITDMTKRQRDVAALDAKYTKELADAQNRN
TDLQRRLAAGSRVRVEGRCTVPTTTTTKTASTRRVGNAATVELSPVAGQNVLDIRAGIISDQEKLKYLQEYIRTQCK

Sequences:

>Translated_157_residues
MMFNWKTMFVGLLLVSLIVAGRLANHYRNNAITYKYQRDTATHNLKLANETITDMTKRQRDVAALDAKYTKELADAQNRN
TDLQRRLAAGSRVRVEGRCTVPTTTTTKTASTRRVGNAATVELSPVAGQNVLDIRAGIISDQEKLKYLQEYIRTQCK
>Mature_157_residues
MMFNWKTMFVGLLLVSLIVAGRLANHYRNNAITYKYQRDTATHNLKLANETITDMTKRQRDVAALDAKYTKELADAQNRN
TDLQRRLAAGSRVRVEGRCTVPTTTTTKTASTRRVGNAATVELSPVAGQNVLDIRAGIISDQEKLKYLQEYIRTQCK

Specific function: Necessary for host cell lysis. It is believed to code for an endopeptidase that cleaves the amino-carboxyl cross-link between the diaminopimelic acid and D-alanine residues in the murein component of the bacterial cell wall [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786769, Length=134, Percent_Identity=47.7611940298507, Blast_Score=110, Evalue=4e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004929 [H]

Pfam domain/function: PF03245 Phage_lysis [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 17708; Mature: 17708

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMFNWKTMFVGLLLVSLIVAGRLANHYRNNAITYKYQRDTATHNLKLANETITDMTKRQR
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEECHHHHHHHHHHHH
DVAALDAKYTKELADAQNRNTDLQRRLAAGSRVRVEGRCTVPTTTTTKTASTRRVGNAAT
HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEECCEEECCCCCCCCCCCHHCCCCEEE
VELSPVAGQNVLDIRAGIISDQEKLKYLQEYIRTQCK
EEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMFNWKTMFVGLLLVSLIVAGRLANHYRNNAITYKYQRDTATHNLKLANETITDMTKRQR
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEECHHHHHHHHHHHH
DVAALDAKYTKELADAQNRNTDLQRRLAAGSRVRVEGRCTVPTTTTTKTASTRRVGNAAT
HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEECCEEECCCCCCCCCCCHHCCCCEEE
VELSPVAGQNVLDIRAGIISDQEKLKYLQEYIRTQCK
EEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]