Click here to switch to the map view.

The map label for this gene is nohA [H]

Identifier: 16765930

GI number: 16765930

Start: 2757539

End: 2758033

Strand: Reverse

Name: nohA [H]

Synonym: STM2609

Alternate gene names: 16765930

Gene position: 2758033-2757539 (Counterclockwise)

Preceding gene: 39546345

Following gene: 16765929

Centisome position: 56.78

GC content: 52.12

Gene sequence:

>495_bases
ATGAACGTGAATAAAAAAAAACTGGCTGAAATTTTTGGTTGTGACGTCAGAACTGTCACAGCCTGGCAAAGCCAGGGGCT
GCCACTTGTTTCCGGAGGAGGAAAAGGTAACGAAGCAGTGTTCGACACCGCGGCAGCGATTTCATGGTACGCGGAGCGTG
ATGCGTCTATTGAAAATGAAAAGCTGCGTAAAGAGGTTGATGATTTACGTGCCGCTGCGGAATCAGATCTTAATCCCGGC
ACCATCGACTATGAGCGCTACCGCCTGACAAAAGCCCAGGCGGATGCGCAGGAACTTAAAAATGCTGAGCGCGAAGGGCT
GGTTCTTGAGACCGAACTGTTCACCTACATCCTGCAACGGGTGGCTCAGGAAATAGCAGGGATACTGTCAAGGGTACCGC
TGGTATTACAGCGCAAATATCCTGATCTGTGCCAGTCGCACATCGATGTGGTCAGAACGGAAATCGCCAGGGCGTCAGGC
AGGGCGCCACGATAG

Upstream 100 bases:

>100_bases
TTTAAAGGTTTTTTTAGAAAAAAAGAAAGGATCTGCTGGATAACGTTTTTAGTTAAAAACGAAGATCGCAGATCCTTTCC
TGTTTCCGGGAGACTTTTCC

Downstream 100 bases:

>100_bases
CGGATGTGGAGAAGTGGACCGATGATTTCCGGAGAGCGCAGGGCGAATAATGCCAACAGAGCCATAACTAACGGGCTGAT
AGCGCTTCATATTCCCGTAC

Product: DNA packaging-like protein

Products: NA

Alternate protein names: Gp1 [H]

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MNVNKKKLAEIFGCDVRTVTAWQSQGLPLVSGGGKGNEAVFDTAAAISWYAERDASIENEKLRKEVDDLRAAAESDLNPG
TIDYERYRLTKAQADAQELKNAEREGLVLETELFTYILQRVAQEIAGILSRVPLVLQRKYPDLCQSHIDVVRTEIARASG
RAPR

Sequences:

>Translated_164_residues
MNVNKKKLAEIFGCDVRTVTAWQSQGLPLVSGGGKGNEAVFDTAAAISWYAERDASIENEKLRKEVDDLRAAAESDLNPG
TIDYERYRLTKAQADAQELKNAEREGLVLETELFTYILQRVAQEIAGILSRVPLVLQRKYPDLCQSHIDVVRTEIARASG
RAPR
>Mature_164_residues
MNVNKKKLAEIFGCDVRTVTAWQSQGLPLVSGGGKGNEAVFDTAAAISWYAERDASIENEKLRKEVDDLRAAAESDLNPG
TIDYERYRLTKAQADAQELKNAEREGLVLETELFTYILQRVAQEIAGILSRVPLVLQRKYPDLCQSHIDVVRTEIARASG
RAPR

Specific function: Involved in the initiation of the phage DNA packaging into the prohead. Processes replicating concatemeric DNA into pieces of unit length with cohesive ends [H]

COG id: COG4220

COG function: function code L; Phage DNA packaging protein, Nu1 subunit of terminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the terminase small subunit family [H]

Homologues:

Organism=Escherichia coli, GI1786773, Length=162, Percent_Identity=57.4074074074074, Blast_Score=205, Evalue=1e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR010906
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07471 Phage_Nu1 [H]

EC number: NA

Molecular weight: Translated: 18262; Mature: 18262

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVNKKKLAEIFGCDVRTVTAWQSQGLPLVSGGGKGNEAVFDTAAAISWYAERDASIENE
CCCCHHHHHHHHCCCCCEEHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHH
KLRKEVDDLRAAAESDLNPGTIDYERYRLTKAQADAQELKNAEREGLVLETELFTYILQR
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHH
VAQEIAGILSRVPLVLQRKYPDLCQSHIDVVRTEIARASGRAPR
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNVNKKKLAEIFGCDVRTVTAWQSQGLPLVSGGGKGNEAVFDTAAAISWYAERDASIENE
CCCCHHHHHHHHCCCCCEEHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHH
KLRKEVDDLRAAAESDLNPGTIDYERYRLTKAQADAQELKNAEREGLVLETELFTYILQR
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHH
VAQEIAGILSRVPLVLQRKYPDLCQSHIDVVRTEIARASGRAPR
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]