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The map label for this gene is lpfC

Identifier: 16766924

GI number: 16766924

Start: 3824115

End: 3826643

Strand: Reverse

Name: lpfC

Synonym: STM3638

Alternate gene names: 16766924

Gene position: 3826643-3824115 (Counterclockwise)

Preceding gene: 16766925

Following gene: 16766923

Centisome position: 78.78

GC content: 55.36

Gene sequence:

>2529_bases
ATGACATGGACGCATCTTCCTCTGGGCAATAAGACCTCGCGTTTCACGCAGTCTGCGCTTGCGCTGATGATAGCGGGTAC
GCTCCCCGCGTATGCGGGAACATTTAACCCGCGCTTTCTGGAGGATGTGCCGGGTATTGATCAGCACGTTGACCTTTCAA
TGTATGAATCCAATAAAGCTGAACACCTGCCAGGTAAATACCGCGTCTCGGTGGTGGTCAACGAAAAAAAAATGGAGTCT
CGCACCCTGGAGTTTAAGGCAGCGACAGAGGCGCAGCGCGCAAAAATGGGTGAATCCCTGGTGCCGTGCTTAAGCCGCGT
GCAGCTTGAAGATATGGGCGTGCGTATTGATAGCTTCCCGGCGCTGAAAATGGCCCCGCCTGAAGCCTGTGTTGCTTTTG
ACGACATTATTCCCCAGGCCGCCAGCCATTTCGACTTTGCAGACCAGACCCTGATCATGAGCTTCCCGCAGGCTGCGATG
AAGCAGACAGCGCGCGGTACGGTGCCAGAATCGCAGTGGGACGAAGGGGTGAATGCCCTGCTGGTGGATTATAACTTTTC
CGGCAGCAACGCCAGCTATGACGCACACGACAGTGAAACCAGCTACAACAGCGACAGCTACTATCTGAATCTGCGCAGCG
GTATGAACCTGGGGGCATGGCGGTTACGTAACTATAGCACCTGGACGCGAAACGACGGTAACAACACATGGGATAACATT
GGCACATCCTTAAGCCGTGCCATTGTACCGCTGAAATCACAGCTGACGTTGGGGGATACCTCCACTGCCGGTGATATTTT
TGACAGCGTTCAGATGCGCGGTGTGCAGTTAACTTCCGACGAAGAGATGCTGCCTGACAGCCAGCGCGGGTTTGCGCCCG
TCATCCGGGGTATTGCCAAAAGTAACGCCGAAGTTACCGTTGAGCAGAACAACTACGTTATTTACCGTACGTTTGTTCAG
CCGGGTGCGTTTGAAATTAACGACCTGTATCCAACCTCAAACAGCGGCGACCTGACGGTCACCATTAAAGAATCGGACGG
CAGTGAGCAGAAGTTCGTTCAGCCGTTCTCCTCGGTGGCGCTCCTCCAGCGTGAAGGCCATCTCAAATACAGCCTTTCCG
CCGGGGAATACCGTGCCGGGAACTATAACAGCGCCGAGCCGAAATTCGGGCAGCTTGATGCCATGTACGGCCTGCCGTAT
GGCTTTACCGTTTACGGTGGTGCGATCTTCTCTGACGACTATTACTCGCTGGCGGGAGGATTAGGTAAAAACTTCGGTTA
TATCGGCGCGATCTCCATCGATGTAACCCAGGCAAAAAGCAAGCTGGCAAATGAGGAGAATTCGGAAGGTCAGTCTTATC
GTTTCCTCTACTCCAAGAGCTTTAACAGCGGTACAGATTTCCGTCTGCTGGGTTACAAGTATTCGACCAGCGGCTATTAC
ACCTTCCAGGAAGCGACGGATGTGCGCAGCGATGCGGACAGCTCTTATAGCCAGTACCACAAACGTAGTCAGATTCAGGG
CAACGTGACGCAGCAACTGGGCGCCTGGGGCTCGGTCTATTTTAACGTCACGCAGCAGGACTACTGGAACGATGAAGGTA
AACAGCGTTCGCTGAATGCCGGTTATAACGGCCGTATTGGCCGCGTGAACTACAGCGTTGCTTACACCTGGACGAAAAGC
CCGGAGTGGGATGAGAGCGATCGTTTACTGTCATTCTCCATGTCGATTCCACTGGGACGCGTGTGGAGTAACTACCACCT
CACGACCGATCAGCATGGCCGAACCAACCAGCAGTTAGGGGTGAGCGGCACCGCGCTGGAAGACCACAACCTGAACTATA
GTGTGCAGGAAGGCTACGGCAGCAACGGCGTGGGTAACAGCGGCAGCGTGAACCTGGATTACCAGGGCGGCGTGGGTAGC
GCCAGCCTGGGTTACAACTACAACCGTGACGGCCAGCAGGTGAACTACGGTTTGCGCGGCGGTGTGATAGCCCATAGCGA
AGGTATCACTCTTTCTCAACCGCTGGGTGAATCCATGGCCATTATCTCCGCGCCGGGCGCGCGCGGCGCGCACGTGATCA
ACAACGGTGGTGTGGAAGTGGACTGGATGGGTAATGCGGTCGTACCTTACCTTACTCCGTACCGTGAAACGGAAGTCTCA
CTGCGAAGCGACAGCCTGAACAACCAGGTTGACCTGGATACCGCCTCCGTCAACGTAGTGCCGACACGCGGCGCGATTGT
TCGTGCCCGCTTCGATACCCGAGTGGGCTATCGTGTGCTGATGAATCTGACGCAGGCCAATGGCAAAGCGGTGCCGTTTG
GTGCTACCGCCACGCTGCTGGATACCACAAAAGAGTCCAGCAGCATTGTGGGTGAAGACGGTCAGCTTTATATCAGCGGG
ATGCCGGAGAAAGGTGCCCTTCAGGTGAACTGGGGTAAAGACCAGGCACAGCAATGCCGCGTGGCGTTTACGCTGCCGGA
ACAACAGGATAATACCGGCGTGGTGATGGCGAATGCCGTCTGCCGGTAA

Upstream 100 bases:

>100_bases
AAGGTAAGCGAAGTTAAATACAACATTATTAATGACTTTGGCACTGCTGGCGACATGTTGACACAGCGCGTTAACTAACA
CGTTTTAAAGGATTATTACT

Downstream 100 bases:

>100_bases
CAGGGAAGGAAACGATTATGTTGAAAAAGTTGATAATGTTTACGGGCCTGTTGGGCGGGTCGGTGCTGTTTTCGGGGCAG
GCGCTGGCAGCGGCAGATTT

Product: long polar fimbrial outer membrane usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 842; Mature: 841

Protein sequence:

>842_residues
MTWTHLPLGNKTSRFTQSALALMIAGTLPAYAGTFNPRFLEDVPGIDQHVDLSMYESNKAEHLPGKYRVSVVVNEKKMES
RTLEFKAATEAQRAKMGESLVPCLSRVQLEDMGVRIDSFPALKMAPPEACVAFDDIIPQAASHFDFADQTLIMSFPQAAM
KQTARGTVPESQWDEGVNALLVDYNFSGSNASYDAHDSETSYNSDSYYLNLRSGMNLGAWRLRNYSTWTRNDGNNTWDNI
GTSLSRAIVPLKSQLTLGDTSTAGDIFDSVQMRGVQLTSDEEMLPDSQRGFAPVIRGIAKSNAEVTVEQNNYVIYRTFVQ
PGAFEINDLYPTSNSGDLTVTIKESDGSEQKFVQPFSSVALLQREGHLKYSLSAGEYRAGNYNSAEPKFGQLDAMYGLPY
GFTVYGGAIFSDDYYSLAGGLGKNFGYIGAISIDVTQAKSKLANEENSEGQSYRFLYSKSFNSGTDFRLLGYKYSTSGYY
TFQEATDVRSDADSSYSQYHKRSQIQGNVTQQLGAWGSVYFNVTQQDYWNDEGKQRSLNAGYNGRIGRVNYSVAYTWTKS
PEWDESDRLLSFSMSIPLGRVWSNYHLTTDQHGRTNQQLGVSGTALEDHNLNYSVQEGYGSNGVGNSGSVNLDYQGGVGS
ASLGYNYNRDGQQVNYGLRGGVIAHSEGITLSQPLGESMAIISAPGARGAHVINNGGVEVDWMGNAVVPYLTPYRETEVS
LRSDSLNNQVDLDTASVNVVPTRGAIVRARFDTRVGYRVLMNLTQANGKAVPFGATATLLDTTKESSSIVGEDGQLYISG
MPEKGALQVNWGKDQAQQCRVAFTLPEQQDNTGVVMANAVCR

Sequences:

>Translated_842_residues
MTWTHLPLGNKTSRFTQSALALMIAGTLPAYAGTFNPRFLEDVPGIDQHVDLSMYESNKAEHLPGKYRVSVVVNEKKMES
RTLEFKAATEAQRAKMGESLVPCLSRVQLEDMGVRIDSFPALKMAPPEACVAFDDIIPQAASHFDFADQTLIMSFPQAAM
KQTARGTVPESQWDEGVNALLVDYNFSGSNASYDAHDSETSYNSDSYYLNLRSGMNLGAWRLRNYSTWTRNDGNNTWDNI
GTSLSRAIVPLKSQLTLGDTSTAGDIFDSVQMRGVQLTSDEEMLPDSQRGFAPVIRGIAKSNAEVTVEQNNYVIYRTFVQ
PGAFEINDLYPTSNSGDLTVTIKESDGSEQKFVQPFSSVALLQREGHLKYSLSAGEYRAGNYNSAEPKFGQLDAMYGLPY
GFTVYGGAIFSDDYYSLAGGLGKNFGYIGAISIDVTQAKSKLANEENSEGQSYRFLYSKSFNSGTDFRLLGYKYSTSGYY
TFQEATDVRSDADSSYSQYHKRSQIQGNVTQQLGAWGSVYFNVTQQDYWNDEGKQRSLNAGYNGRIGRVNYSVAYTWTKS
PEWDESDRLLSFSMSIPLGRVWSNYHLTTDQHGRTNQQLGVSGTALEDHNLNYSVQEGYGSNGVGNSGSVNLDYQGGVGS
ASLGYNYNRDGQQVNYGLRGGVIAHSEGITLSQPLGESMAIISAPGARGAHVINNGGVEVDWMGNAVVPYLTPYRETEVS
LRSDSLNNQVDLDTASVNVVPTRGAIVRARFDTRVGYRVLMNLTQANGKAVPFGATATLLDTTKESSSIVGEDGQLYISG
MPEKGALQVNWGKDQAQQCRVAFTLPEQQDNTGVVMANAVCR
>Mature_841_residues
TWTHLPLGNKTSRFTQSALALMIAGTLPAYAGTFNPRFLEDVPGIDQHVDLSMYESNKAEHLPGKYRVSVVVNEKKMESR
TLEFKAATEAQRAKMGESLVPCLSRVQLEDMGVRIDSFPALKMAPPEACVAFDDIIPQAASHFDFADQTLIMSFPQAAMK
QTARGTVPESQWDEGVNALLVDYNFSGSNASYDAHDSETSYNSDSYYLNLRSGMNLGAWRLRNYSTWTRNDGNNTWDNIG
TSLSRAIVPLKSQLTLGDTSTAGDIFDSVQMRGVQLTSDEEMLPDSQRGFAPVIRGIAKSNAEVTVEQNNYVIYRTFVQP
GAFEINDLYPTSNSGDLTVTIKESDGSEQKFVQPFSSVALLQREGHLKYSLSAGEYRAGNYNSAEPKFGQLDAMYGLPYG
FTVYGGAIFSDDYYSLAGGLGKNFGYIGAISIDVTQAKSKLANEENSEGQSYRFLYSKSFNSGTDFRLLGYKYSTSGYYT
FQEATDVRSDADSSYSQYHKRSQIQGNVTQQLGAWGSVYFNVTQQDYWNDEGKQRSLNAGYNGRIGRVNYSVAYTWTKSP
EWDESDRLLSFSMSIPLGRVWSNYHLTTDQHGRTNQQLGVSGTALEDHNLNYSVQEGYGSNGVGNSGSVNLDYQGGVGSA
SLGYNYNRDGQQVNYGLRGGVIAHSEGITLSQPLGESMAIISAPGARGAHVINNGGVEVDWMGNAVVPYLTPYRETEVSL
RSDSLNNQVDLDTASVNVVPTRGAIVRARFDTRVGYRVLMNLTQANGKAVPFGATATLLDTTKESSSIVGEDGQLYISGM
PEKGALQVNWGKDQAQQCRVAFTLPEQQDNTGVVMANAVCR

Specific function: Involved in the export and assembly of lpfA fimbrial subunits across the outer membrane

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family

Homologues:

Organism=Escherichia coli, GI1787172, Length=858, Percent_Identity=44.8717948717949, Blast_Score=716, Evalue=0.0,
Organism=Escherichia coli, GI1790772, Length=870, Percent_Identity=43.6781609195402, Blast_Score=706, Evalue=0.0,
Organism=Escherichia coli, GI1786744, Length=859, Percent_Identity=40.512223515716, Blast_Score=635, Evalue=0.0,
Organism=Escherichia coli, GI1789533, Length=829, Percent_Identity=41.978287092883, Blast_Score=619, Evalue=1e-178,
Organism=Escherichia coli, GI1786332, Length=814, Percent_Identity=33.046683046683, Blast_Score=369, Evalue=1e-103,
Organism=Escherichia coli, GI1788427, Length=836, Percent_Identity=29.6650717703349, Blast_Score=337, Evalue=2e-93,
Organism=Escherichia coli, GI87081778, Length=844, Percent_Identity=28.9099526066351, Blast_Score=268, Evalue=9e-73,
Organism=Escherichia coli, GI1789610, Length=809, Percent_Identity=23.6093943139679, Blast_Score=149, Evalue=1e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): LPFC_SALTY (P43662)

Other databases:

- EMBL:   U18559
- EMBL:   AE006468
- PIR:   C56271
- RefSeq:   NP_462539.1
- ProteinModelPortal:   P43662
- SMR:   P43662
- GeneID:   1255162
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM3638
- NMPDR:   fig|99287.1.peg.3515
- HOGENOM:   HBG511492
- OMA:   FSTASEA
- ProtClustDB:   PRK15207
- BioCyc:   STYP99287:STM3638-MONOMER
- InterPro:   IPR000015
- InterPro:   IPR018030

Pfam domain/function: PF00577 Usher

EC number: NA

Molecular weight: Translated: 92363; Mature: 92232

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTWTHLPLGNKTSRFTQSALALMIAGTLPAYAGTFNPRFLEDVPGIDQHVDLSMYESNKA
CCEEECCCCCCHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHCCCCCCCEEEEEECCCCC
EHLPGKYRVSVVVNEKKMESRTLEFKAATEAQRAKMGESLVPCLSRVQLEDMGVRIDSFP
CCCCCEEEEEEEEECCCCCCCEEEEEEHHHHHHHHCCCHHHHHHHHCCHHHHCEEECCCC
ALKMAPPEACVAFDDIIPQAASHFDFADQTLIMSFPQAAMKQTARGTVPESQWDEGVNAL
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHCCCCCCHHHHCCCEEE
LVDYNFSGSNASYDAHDSETSYNSDSYYLNLRSGMNLGAWRLRNYSTWTRNDGNNTWDNI
EEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCEECCCCCCCHHHH
GTSLSRAIVPLKSQLTLGDTSTAGDIFDSVQMRGVQLTSDEEMLPDSQRGFAPVIRGIAK
HHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCEEECCCHHHCCCCCCCHHHHHHHHHC
SNAEVTVEQNNYVIYRTFVQPGAFEINDLYPTSNSGDLTVTIKESDGSEQKFVQPFSSVA
CCCEEEEECCCEEEEEEEECCCCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
LLQREGHLKYSLSAGEYRAGNYNSAEPKFGQLDAMYGLPYGFTVYGGAIFSDDYYSLAGG
HHHHCCCEEEEECCCCEECCCCCCCCCCCCCEEHHHCCCCCEEEECCEEECCCHHHHHCC
LGKNFGYIGAISIDVTQAKSKLANEENSEGQSYRFLYSKSFNSGTDFRLLGYKYSTSGYY
CCCCCCEEEEEEEEHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCCEE
TFQEATDVRSDADSSYSQYHKRSQIQGNVTQQLGAWGSVYFNVTQQDYWNDEGKQRSLNA
EEHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCEEEEEEEECHHCCCCCCCCCCCCC
GYNGRIGRVNYSVAYTWTKSPEWDESDRLLSFSMSIPLGRVWSNYHLTTDQHGRTNQQLG
CCCCCEEEEEEEEEEEECCCCCCCCCCCEEEEEECCCHHHHCCCEEEECCCCCCCCCCCC
VSGTALEDHNLNYSVQEGYGSNGVGNSGSVNLDYQGGVGSASLGYNYNRDGQQVNYGLRG
CCCCEEECCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCC
GVIAHSEGITLSQPLGESMAIISAPGARGAHVINNGGVEVDWMGNAVVPYLTPYRETEVS
CEEEECCCCEECCCCCCCEEEEECCCCCCCEEEECCCEEEEECCCEECCCCCCCCCCEEE
LRSDSLNNQVDLDTASVNVVPTRGAIVRARFDTRVGYRVLMNLTQANGKAVPFGATATLL
EECCCCCCEEEEEECEEEEEECCCEEEEEECCCCCCEEEEEEHHHCCCCEECCCCEEEEE
DTTKESSSIVGEDGQLYISGMPEKGALQVNWGKDQAQQCRVAFTLPEQQDNTGVVMANAV
ECCCCCCCEECCCCEEEEECCCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCEEEECEE
CR
CC
>Mature Secondary Structure 
TWTHLPLGNKTSRFTQSALALMIAGTLPAYAGTFNPRFLEDVPGIDQHVDLSMYESNKA
CEEECCCCCCHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHCCCCCCCEEEEEECCCCC
EHLPGKYRVSVVVNEKKMESRTLEFKAATEAQRAKMGESLVPCLSRVQLEDMGVRIDSFP
CCCCCEEEEEEEEECCCCCCCEEEEEEHHHHHHHHCCCHHHHHHHHCCHHHHCEEECCCC
ALKMAPPEACVAFDDIIPQAASHFDFADQTLIMSFPQAAMKQTARGTVPESQWDEGVNAL
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHCCCCCCHHHHCCCEEE
LVDYNFSGSNASYDAHDSETSYNSDSYYLNLRSGMNLGAWRLRNYSTWTRNDGNNTWDNI
EEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCEECCCCCCCHHHH
GTSLSRAIVPLKSQLTLGDTSTAGDIFDSVQMRGVQLTSDEEMLPDSQRGFAPVIRGIAK
HHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCEEECCCHHHCCCCCCCHHHHHHHHHC
SNAEVTVEQNNYVIYRTFVQPGAFEINDLYPTSNSGDLTVTIKESDGSEQKFVQPFSSVA
CCCEEEEECCCEEEEEEEECCCCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
LLQREGHLKYSLSAGEYRAGNYNSAEPKFGQLDAMYGLPYGFTVYGGAIFSDDYYSLAGG
HHHHCCCEEEEECCCCEECCCCCCCCCCCCCEEHHHCCCCCEEEECCEEECCCHHHHHCC
LGKNFGYIGAISIDVTQAKSKLANEENSEGQSYRFLYSKSFNSGTDFRLLGYKYSTSGYY
CCCCCCEEEEEEEEHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCCEE
TFQEATDVRSDADSSYSQYHKRSQIQGNVTQQLGAWGSVYFNVTQQDYWNDEGKQRSLNA
EEHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCEEEEEEEECHHCCCCCCCCCCCCC
GYNGRIGRVNYSVAYTWTKSPEWDESDRLLSFSMSIPLGRVWSNYHLTTDQHGRTNQQLG
CCCCCEEEEEEEEEEEECCCCCCCCCCCEEEEEECCCHHHHCCCEEEECCCCCCCCCCCC
VSGTALEDHNLNYSVQEGYGSNGVGNSGSVNLDYQGGVGSASLGYNYNRDGQQVNYGLRG
CCCCEEECCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCC
GVIAHSEGITLSQPLGESMAIISAPGARGAHVINNGGVEVDWMGNAVVPYLTPYRETEVS
CEEEECCCCEECCCCCCCEEEEECCCCCCCEEEECCCEEEEECCCEECCCCCCCCCCEEE
LRSDSLNNQVDLDTASVNVVPTRGAIVRARFDTRVGYRVLMNLTQANGKAVPFGATATLL
EECCCCCCEEEEEECEEEEEECCCEEEEEECCCCCCEEEEEEHHHCCCCEECCCCEEEEE
DTTKESSSIVGEDGQLYISGMPEKGALQVNWGKDQAQQCRVAFTLPEQQDNTGVVMANAV
ECCCCCCCEECCCCEEEEECCCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCEEEECEE
CR
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7721701; 11677609