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The map label for this gene is lpfD

Identifier: 16766923

GI number: 16766923

Start: 3823018

End: 3824097

Strand: Reverse

Name: lpfD

Synonym: STM3637

Alternate gene names: 16766923

Gene position: 3824097-3823018 (Counterclockwise)

Preceding gene: 16766924

Following gene: 16766922

Centisome position: 78.73

GC content: 46.67

Gene sequence:

>1080_bases
ATGTTGAAAAAGTTGATAATGTTTACGGGCCTGTTGGGCGGGTCGGTGCTGTTTTCGGGGCAGGCGCTGGCAGCGGCAGA
TTTTGGACCATGTACTCCTGAAGGTGGAACACATATCTTCAGTGCCACCATAAATAAAACAGTTTCAGATACGTCAAAGA
ACACAACGGGTGCGACCTTCGTAGATTTCGATAGCTGGAATTTAGGTGGAACCTATGCGATGTCCTGTGAATGCCCTGAT
GATACCTCTCTTATAAATGACACCTTATTTAAGGCTGTGGTTCCTCTGGCCTTTGTTACGAATATAGAGAGTCGCTCCTA
TTACCAGATCAATAATAATATTGCCATTGCGAGCGATGTACTGATTTCGGGGGGACGAGGAGAATACGTTAACACACCGT
TTGAGAATGTAGGTAACCTGACAAACAACCGCTCTCAGTGTTCGCAAAATGCAAGTAGTAAAGATGCAATATGGACATCC
GGTGGCAAAGGTCACTTATCGCTCTATATTCTCCATCCGTTTGTGGGTGAAAGTATTATACCTAGCACCAAAATAATGGA
CCTTTTTGTGACAAAGAAACCCAGTGTATATGGCAGTATACCTGCGTCGTCTGTATATATCAGTGGTTCAATTACGGTAC
CTCAGGGCTGTGAACTCTCCAGCGGCAGCACGCTGGAAATTCCGTTTGGGGAATTTAAGGCCACTGATTTTAAAGATCGC
AAAGGACAAGTTGCAAAGAACGCCACGAAATTCACCAAAGAGCTGCAGTTTAAATGCACCAATATTTCCGATGGCGTAAA
GATCTTCCTGCGTATTGAGGGAATGCCAAACGCTAATGATTCGAATGCCATCGACATGGGCAACCCGGATATCGGTGCCG
TCATTGAGGGCGCTAACGGTAAAATTTTGGTGCCAAATGACGCCAGTGTTAATCAGGAGCTGAGCGTATCGGGTCTTGTT
GACGACACGCACCGTACCGCCTCAACGACCATTTCGGCTTACCCTATCAGTACCACCGGCAAATTGCCGGCCGCCGGGGA
TTTCGAGGGAATTGCCACCATGCGTATTGATGTGGAGTAA

Upstream 100 bases:

>100_bases
CACAGCAATGCCGCGTGGCGTTTACGCTGCCGGAACAACAGGATAATACCGGCGTGGTGATGGCGAATGCCGTCTGCCGG
TAACAGGGAAGGAAACGATT

Downstream 100 bases:

>100_bases
GCAGGATGAAAAACCTTCATGCTTTGATGCCAGCGTGTTTACTGCTTACCGCTTCCGCGATGGCGGCACCGTCGAATATC
GGTTCTGCTGGTGATATCCA

Product: long polar fimbrial protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MLKKLIMFTGLLGGSVLFSGQALAAADFGPCTPEGGTHIFSATINKTVSDTSKNTTGATFVDFDSWNLGGTYAMSCECPD
DTSLINDTLFKAVVPLAFVTNIESRSYYQINNNIAIASDVLISGGRGEYVNTPFENVGNLTNNRSQCSQNASSKDAIWTS
GGKGHLSLYILHPFVGESIIPSTKIMDLFVTKKPSVYGSIPASSVYISGSITVPQGCELSSGSTLEIPFGEFKATDFKDR
KGQVAKNATKFTKELQFKCTNISDGVKIFLRIEGMPNANDSNAIDMGNPDIGAVIEGANGKILVPNDASVNQELSVSGLV
DDTHRTASTTISAYPISTTGKLPAAGDFEGIATMRIDVE

Sequences:

>Translated_359_residues
MLKKLIMFTGLLGGSVLFSGQALAAADFGPCTPEGGTHIFSATINKTVSDTSKNTTGATFVDFDSWNLGGTYAMSCECPD
DTSLINDTLFKAVVPLAFVTNIESRSYYQINNNIAIASDVLISGGRGEYVNTPFENVGNLTNNRSQCSQNASSKDAIWTS
GGKGHLSLYILHPFVGESIIPSTKIMDLFVTKKPSVYGSIPASSVYISGSITVPQGCELSSGSTLEIPFGEFKATDFKDR
KGQVAKNATKFTKELQFKCTNISDGVKIFLRIEGMPNANDSNAIDMGNPDIGAVIEGANGKILVPNDASVNQELSVSGLV
DDTHRTASTTISAYPISTTGKLPAAGDFEGIATMRIDVE
>Mature_359_residues
MLKKLIMFTGLLGGSVLFSGQALAAADFGPCTPEGGTHIFSATINKTVSDTSKNTTGATFVDFDSWNLGGTYAMSCECPD
DTSLINDTLFKAVVPLAFVTNIESRSYYQINNNIAIASDVLISGGRGEYVNTPFENVGNLTNNRSQCSQNASSKDAIWTS
GGKGHLSLYILHPFVGESIIPSTKIMDLFVTKKPSVYGSIPASSVYISGSITVPQGCELSSGSTLEIPFGEFKATDFKDR
KGQVAKNATKFTKELQFKCTNISDGVKIFLRIEGMPNANDSNAIDMGNPDIGAVIEGANGKILVPNDASVNQELSVSGLV
DDTHRTASTTISAYPISTTGKLPAAGDFEGIATMRIDVE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family

Homologues:

Organism=Escherichia coli, GI1787173, Length=364, Percent_Identity=26.6483516483516, Blast_Score=111, Evalue=8e-26,
Organism=Escherichia coli, GI145693100, Length=195, Percent_Identity=28.7179487179487, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1789534, Length=386, Percent_Identity=24.0932642487047, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): LPFD_SALTY (P43663)

Other databases:

- EMBL:   U18559
- EMBL:   AE006468
- PIR:   D56271
- RefSeq:   NP_462538.1
- ProteinModelPortal:   P43663
- GeneID:   1255161
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM3637
- NMPDR:   fig|99287.1.peg.3514
- HOGENOM:   HBG467983
- OMA:   RIVINST
- ProtClustDB:   PRK15206
- BioCyc:   STYP99287:STM3637-MONOMER
- GO:   GO:0009289
- InterPro:   IPR008966
- InterPro:   IPR000259
- Gene3D:   G3DSA:2.60.40.1090

Pfam domain/function: SSF49401 Adhes_bact

EC number: NA

Molecular weight: Translated: 38038; Mature: 38038

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKLIMFTGLLGGSVLFSGQALAAADFGPCTPEGGTHIFSATINKTVSDTSKNTTGATF
CHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEE
VDFDSWNLGGTYAMSCECPDDTSLINDTLFKAVVPLAFVTNIESRSYYQINNNIAIASDV
EEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHEECCCCCEEEEECCCEEEEEEE
LISGGRGEYVNTPFENVGNLTNNRSQCSQNASSKDAIWTSGGKGHLSLYILHPFVGESII
EEECCCCCCCCCCHHHHCCCCCCHHHHHCCCCCCCCEEECCCCCEEEEEEECCCCCCCCC
PSTKIMDLFVTKKPSVYGSIPASSVYISGSITVPQGCELSSGSTLEIPFGEFKATDFKDR
CCCEEEEEEEECCCCEEECCCCCEEEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCC
KGQVAKNATKFTKELQFKCTNISDGVKIFLRIEGMPNANDSNAIDMGNPDIGAVIEGANG
CCCHHHHHHHHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCEEECCCCCCCEEEECCCC
KILVPNDASVNQELSVSGLVDDTHRTASTTISAYPISTTGKLPAAGDFEGIATMRIDVE
CEEECCCCCCCCEEEEECEECCCCCCHHCEEEEEECCCCCCCCCCCCCCCEEEEEEEEC
>Mature Secondary Structure
MLKKLIMFTGLLGGSVLFSGQALAAADFGPCTPEGGTHIFSATINKTVSDTSKNTTGATF
CHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEE
VDFDSWNLGGTYAMSCECPDDTSLINDTLFKAVVPLAFVTNIESRSYYQINNNIAIASDV
EEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHEECCCCCEEEEECCCEEEEEEE
LISGGRGEYVNTPFENVGNLTNNRSQCSQNASSKDAIWTSGGKGHLSLYILHPFVGESII
EEECCCCCCCCCCHHHHCCCCCCHHHHHCCCCCCCCEEECCCCCEEEEEEECCCCCCCCC
PSTKIMDLFVTKKPSVYGSIPASSVYISGSITVPQGCELSSGSTLEIPFGEFKATDFKDR
CCCEEEEEEEECCCCEEECCCCCEEEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCC
KGQVAKNATKFTKELQFKCTNISDGVKIFLRIEGMPNANDSNAIDMGNPDIGAVIEGANG
CCCHHHHHHHHHHEEEEEECCCCCCEEEEEEEECCCCCCCCCEEECCCCCCCEEEECCCC
KILVPNDASVNQELSVSGLVDDTHRTASTTISAYPISTTGKLPAAGDFEGIATMRIDVE
CEEECCCCCCCCEEEEECEECCCCCCHHCEEEEEECCCCCCCCCCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721701; 11677609