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The map label for this gene is ygbI [H]

Identifier: 16766225

GI number: 16766225

Start: 3061824

End: 3062588

Strand: Direct

Name: ygbI [H]

Synonym: STM2919

Alternate gene names: 16766225

Gene position: 3061824-3062588 (Clockwise)

Preceding gene: 16766218

Following gene: 16766227

Centisome position: 63.03

GC content: 55.69

Gene sequence:

>765_bases
TTGATACCTACTGAGCGTCGACAAATCATTCTTGATATGGTAGCGGAGAAAGGCATCGTCAGTATCGCTGAACTGACCGA
GCGCATGCATGTATCCCACATGACTATCCGCCGTGACTTACAAAAACTGGAGCAGCAAGGCGCGGTAATCCAGGTCTCTG
GCGGCGTGCAATCATCGACTCGCGTGGCGCACGAACCCTCGCATCAGATCAAAACCGAACTGGCGACGCCGCAGAAAGCG
GCAATTGGCAAACTGGCCGCCAGCCTGGTACAGCCAGAAAGCTGTATCTACCTTGATGCAGGTACGACCACGCTGGCGAT
TGCCAGGCAGCTGGTTACGATGAATAAACTTACGGTGGTGACGAATGATTTCGTTATCGCCGATTACCTGATGGACAATA
GCAATTGCACAATTATTCACACTGGCGGGGCGGTATGCCGGGAAAACCGGTCGTGCGTCGGTGAAGCCGCGGCGACGCTT
TTGCGCGGGCTGATGATTGACCAGGCCTTTATTTCCGCCTCTTCCTGGAGCGTGCGCGGTATTTCAACGCCGGCAGAAGA
TAAAGTCACGGTGAAACGGGCCGTCGCCAGCGCCAGCCGCCAAAAAATTCTGGTGTGCGACGCGACCAAATACGGCCAGG
TCGCGACGTGGCTGGCGTTACCGCTGGCGGAATTCAACCAAATCGTCACCGATGACGGCCTGCCGGAAAGCGCAATTCGG
GCGCTGGCCAAAGTGGATATCTCACTGCTGATGGCCAAACAATAG

Upstream 100 bases:

>100_bases
AAAATGTGTTATTTTTTGTGAAGGCAATCCTCATAGAACTTCACACGCTGTGACGAGAAATCGCGTAAAATCGCGACAGG
ACTAAAGAAAGGAGCAGACG

Downstream 100 bases:

>100_bases
CGAAGCGGCGCAAGCCGCTTACGTCATCATCTTGCGTACCAGTTGCGTAAACTGTTCGCGTTCTTCAGCGCTCAGTCGCC
CCAAAAACTCATCGTCAACG

Product: regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MIPTERRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGGVQSSTRVAHEPSHQIKTELATPQKA
AIGKLAASLVQPESCIYLDAGTTTLAIARQLVTMNKLTVVTNDFVIADYLMDNSNCTIIHTGGAVCRENRSCVGEAAATL
LRGLMIDQAFISASSWSVRGISTPAEDKVTVKRAVASASRQKILVCDATKYGQVATWLALPLAEFNQIVTDDGLPESAIR
ALAKVDISLLMAKQ

Sequences:

>Translated_254_residues
MIPTERRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGGVQSSTRVAHEPSHQIKTELATPQKA
AIGKLAASLVQPESCIYLDAGTTTLAIARQLVTMNKLTVVTNDFVIADYLMDNSNCTIIHTGGAVCRENRSCVGEAAATL
LRGLMIDQAFISASSWSVRGISTPAEDKVTVKRAVASASRQKILVCDATKYGQVATWLALPLAEFNQIVTDDGLPESAIR
ALAKVDISLLMAKQ
>Mature_254_residues
MIPTERRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGGVQSSTRVAHEPSHQIKTELATPQKA
AIGKLAASLVQPESCIYLDAGTTTLAIARQLVTMNKLTVVTNDFVIADYLMDNSNCTIIHTGGAVCRENRSCVGEAAATL
LRGLMIDQAFISASSWSVRGISTPAEDKVTVKRAVASASRQKILVCDATKYGQVATWLALPLAEFNQIVTDDGLPESAIR
ALAKVDISLLMAKQ

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI226510968, Length=254, Percent_Identity=86.6141732283465, Blast_Score=455, Evalue=1e-129,
Organism=Escherichia coli, GI1789519, Length=251, Percent_Identity=29.4820717131474, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1789059, Length=256, Percent_Identity=28.90625, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1789829, Length=250, Percent_Identity=29.6, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI87082344, Length=237, Percent_Identity=27.8481012658228, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787540, Length=244, Percent_Identity=30.327868852459, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1790635, Length=256, Percent_Identity=23.4375, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1790753, Length=236, Percent_Identity=26.6949152542373, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789170, Length=238, Percent_Identity=27.3109243697479, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788069, Length=233, Percent_Identity=24.4635193133047, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27425; Mature: 27425

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPTERRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGGVQSST
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC
RVAHEPSHQIKTELATPQKAAIGKLAASLVQPESCIYLDAGTTTLAIARQLVTMNKLTVV
CCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHEEEE
TNDFVIADYLMDNSNCTIIHTGGAVCRENRSCVGEAAATLLRGLMIDQAFISASSWSVRG
ECCEEEEEEEECCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEC
ISTPAEDKVTVKRAVASASRQKILVCDATKYGQVATWLALPLAEFNQIVTDDGLPESAIR
CCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH
ALAKVDISLLMAKQ
HHHHHHHHHEEECC
>Mature Secondary Structure
MIPTERRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGGVQSST
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC
RVAHEPSHQIKTELATPQKAAIGKLAASLVQPESCIYLDAGTTTLAIARQLVTMNKLTVV
CCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHEEEE
TNDFVIADYLMDNSNCTIIHTGGAVCRENRSCVGEAAATLLRGLMIDQAFISASSWSVRG
ECCEEEEEEEECCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEC
ISTPAEDKVTVKRAVASASRQKILVCDATKYGQVATWLALPLAEFNQIVTDDGLPESAIR
CCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH
ALAKVDISLLMAKQ
HHHHHHHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]