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The map label for this gene is ypfJ [H]

Identifier: 16765806

GI number: 16765806

Start: 2601110

End: 2601973

Strand: Reverse

Name: ypfJ [H]

Synonym: STM2486

Alternate gene names: 16765806

Gene position: 2601973-2601110 (Counterclockwise)

Preceding gene: 16765807

Following gene: 16765805

Centisome position: 53.57

GC content: 56.48

Gene sequence:

>864_bases
ATGCGCTGGCAAGGGCGTCGTGAAAGCAACAATGTAGAGGACAGACGTAATCGGCCAGGCGGCCCCTCGCTGGGTGGCCC
AGGCTTTCGTCTTCCGCGCGGAAAAGGCGGCATCATTCTGTTGGTGGTGGTGTTGGTCGCAGGGTACTATGGGGTGGATT
TAACCGGTCTGTTGACCGGCCAGCCGGTTTCGCAGCAGCAGTCGACGCGTTCGATAAGCCCCAATGATGATGAAGCGGCA
AAATTTACCTCGGTGATTCTGGCGACGACCGAAGATACCTGGGGTCAACTCTTTCAAAAAATGGGGCGCGGCTATCAGCA
GCCAAAACTGGTGATGTACCGTGGTATGACGCGCACCGGCTGTGGTGCGGGTCAGTCCGTGATGGGGCCGTTTTACTGCC
CGGCGGACGGCACCGTTTATATCGATCTCTCATTTTACGATGATATGAAAAATAAGCTGGGCGCGGACGGTGATTTTGCC
CAGGGTTATGTCATCGCCCACGAAGTCGGCCACCACGTACAAAAACTGTTAGGTATTGAGCCGAAAGTACGCCAGTTGCA
GCAAAACGCGTCGCAAACGGAGGTGAATCGCCTTTCGGTGCGCATGGAGCTACAGGCGGATTGCTTTGCCGGCGTGTGGG
GACACAGTATGCAGCAGCAAGGCGTACTGGAGGCGGGCGATCTGGAAGAGGCGCTCAATGCCGCACAGGCTATCGGCGAC
GATCGCTTACAGCAACAGGGGCAGGGGCGCGTCGTGCCGGATAGTTTTACTCACGGCACCTCAGAACAGCGCTACAGCTG
GTTTAAGCGTGGATTTGACAGCGGTGACCCGGCGCAATGTAATACGTTTGGCAAAAACTTTTGA

Upstream 100 bases:

>100_bases
CCGGTATCATCCTTTCCTCATTCTGATAGCGTTTACCTGTGGTAATCCTGCGCCTGACCGCCTACGATCATCTGTATAAC
AAAGAGAGAATGAGGTGATT

Downstream 100 bases:

>100_bases
TAAACCGGGGCAGGGATGTCTGATATCGATGCGCTACAGGCGTTAACGTCGCAAATGACACAGGAAGGCATTCGCCGTTT
ACTGGTCATCAGCGGCGATG

Product: inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MRWQGRRESNNVEDRRNRPGGPSLGGPGFRLPRGKGGIILLVVVLVAGYYGVDLTGLLTGQPVSQQQSTRSISPNDDEAA
KFTSVILATTEDTWGQLFQKMGRGYQQPKLVMYRGMTRTGCGAGQSVMGPFYCPADGTVYIDLSFYDDMKNKLGADGDFA
QGYVIAHEVGHHVQKLLGIEPKVRQLQQNASQTEVNRLSVRMELQADCFAGVWGHSMQQQGVLEAGDLEEALNAAQAIGD
DRLQQQGQGRVVPDSFTHGTSEQRYSWFKRGFDSGDPAQCNTFGKNF

Sequences:

>Translated_287_residues
MRWQGRRESNNVEDRRNRPGGPSLGGPGFRLPRGKGGIILLVVVLVAGYYGVDLTGLLTGQPVSQQQSTRSISPNDDEAA
KFTSVILATTEDTWGQLFQKMGRGYQQPKLVMYRGMTRTGCGAGQSVMGPFYCPADGTVYIDLSFYDDMKNKLGADGDFA
QGYVIAHEVGHHVQKLLGIEPKVRQLQQNASQTEVNRLSVRMELQADCFAGVWGHSMQQQGVLEAGDLEEALNAAQAIGD
DRLQQQGQGRVVPDSFTHGTSEQRYSWFKRGFDSGDPAQCNTFGKNF
>Mature_287_residues
MRWQGRRESNNVEDRRNRPGGPSLGGPGFRLPRGKGGIILLVVVLVAGYYGVDLTGLLTGQPVSQQQSTRSISPNDDEAA
KFTSVILATTEDTWGQLFQKMGRGYQQPKLVMYRGMTRTGCGAGQSVMGPFYCPADGTVYIDLSFYDDMKNKLGADGDFA
QGYVIAHEVGHHVQKLLGIEPKVRQLQQNASQTEVNRLSVRMELQADCFAGVWGHSMQQQGVLEAGDLEEALNAAQAIGD
DRLQQQGQGRVVPDSFTHGTSEQRYSWFKRGFDSGDPAQCNTFGKNF

Specific function: Unknown

COG id: COG2321

COG function: function code R; Predicted metalloprotease

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788819, Length=287, Percent_Identity=92.3344947735192, Blast_Score=538, Evalue=1e-154,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007343 [H]

Pfam domain/function: PF04228 Zn_peptidase [H]

EC number: NA

Molecular weight: Translated: 31515; Mature: 31515

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWQGRRESNNVEDRRNRPGGPSLGGPGFRLPRGKGGIILLVVVLVAGYYGVDLTGLLTG
CCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECC
QPVSQQQSTRSISPNDDEAAKFTSVILATTEDTWGQLFQKMGRGYQQPKLVMYRGMTRTG
CCCCHHHHHCCCCCCCHHHHHHHEEEEEECCHHHHHHHHHHCCCCCCCCEEEECCCCCCC
CGAGQSVMGPFYCPADGTVYIDLSFYDDMKNKLGADGDFAQGYVIAHEVGHHVQKLLGIE
CCCCCCCCCCEECCCCCEEEEEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC
PKVRQLQQNASQTEVNRLSVRMELQADCFAGVWGHSMQQQGVLEAGDLEEALNAAQAIGD
HHHHHHHHCCHHHHHHHHEEEEEECHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHCH
DRLQQQGQGRVVPDSFTHGTSEQRYSWFKRGFDSGDPAQCNTFGKNF
HHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRWQGRRESNNVEDRRNRPGGPSLGGPGFRLPRGKGGIILLVVVLVAGYYGVDLTGLLTG
CCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECC
QPVSQQQSTRSISPNDDEAAKFTSVILATTEDTWGQLFQKMGRGYQQPKLVMYRGMTRTG
CCCCHHHHHCCCCCCCHHHHHHHEEEEEECCHHHHHHHHHHCCCCCCCCEEEECCCCCCC
CGAGQSVMGPFYCPADGTVYIDLSFYDDMKNKLGADGDFAQGYVIAHEVGHHVQKLLGIE
CCCCCCCCCCEECCCCCEEEEEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC
PKVRQLQQNASQTEVNRLSVRMELQADCFAGVWGHSMQQQGVLEAGDLEEALNAAQAIGD
HHHHHHHHCCHHHHHHHHEEEEEECHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHCH
DRLQQQGQGRVVPDSFTHGTSEQRYSWFKRGFDSGDPAQCNTFGKNF
HHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]