| Definition | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chromosome, complete genome. |
|---|---|
| Accession | NC_003197 |
| Length | 4,857,432 |
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The map label for this gene is stcC [H]
Identifier: 16765479
GI number: 16765479
Start: 2243855
End: 2246344
Strand: Reverse
Name: stcC [H]
Synonym: STM2150
Alternate gene names: 16765479
Gene position: 2246344-2243855 (Counterclockwise)
Preceding gene: 16765480
Following gene: 16765478
Centisome position: 46.25
GC content: 45.78
Gene sequence:
>2490_bases ATGCTAAGGATGACGCCCATCGCTTCGCTTGTTTTATTGACTCTGTTTACCTGGCAAACGCAGGCTATCGCGACGGAAAC GTTTGATACCCATTTTATGGTGGGGGGAATGAGAGATCAAAAAATAACAAATTTCCATCTGGATGAGAATAAGCCAATTC CGGGACAGTACGAATTGGATATTTATGTCAACAATCAATGGCGAGGTAAATACGATATCATTGTTGCCGATGATCCCGGT AGCACGTGTATTTCAACTGAGTTGTTGAAAAATATTGGTGTGATAAGCGATGGTCTGCAACCGCAGGGAGCAACGGATTG TATTGCGTTAAAAGATGTCGTGAGAAGCGGTGGCTATACTTTTAATATTGGCGTTTTTCGGCTGGATTTGAGCGTTCCCC AGGCCTATGTAAATGAGGTCGAGGCGGGTTATGTATTGCCTGAAAACTGGGATCGCGGCATCAATGCATTTTATACTTCT TACTATGCCAGCCAGTATTACAGTGACTATAAGAATTCTGGCAGTAGTGAAAGTACTTACGTTCGGTTCAATAGCGGTTT CAATCTGTTGGGCTGGCAAGCGCATGCGGATACCACATTTAATAAAACCGATGGCAGCAGCGGTGAGTGGAAAAGCAACA CATTGTATCTGGAGCGCGGTATCGCTGAGCTCCTCGGCACATTACGCGCCGGGGATCAGTATACCTCGTCAGAGATTTTT GATTCTGTGAGATTTACCGGCGTTCGCCTGTTTCGCGATATGCAAATGTTGCCAAACTCGAAACAGAATTTTACGCCGTT GGTGCAGGGGATTGCACAGACTAACGCTTTGGTAACCATCGAACAGAACGGATTCGTTGTTTATCAGAAAGAGGTTCCTC CTGGCCCCTTTTCCATTGCGGATCTGCAACTCGCGGGCGGTGGCGCGGATCTTGATGTCACCGTGCGTGAGGCGGATGGT TCGATAAATACCTGGCTGGTGCCTTACGCTTCCGTACCGAACATGTTGCAGCCTGGCGTCTCTAAGTATGATTTTTCCGC CGGCCGTAGTCATATTGAAGGCGCCGATAATCAGGCCGATTTTACACAAATCAGTTATCAGTATGGCCTTAATAACCTGT TGACGCTTTATGGCGGTACGATGCTATCGAACCATTATAATGCGTTTACCCTCGGCACGGGGTGGAATACCCGGATTGGC GCCATTTCGCTTGACGCTACGCGAGCGCACAGTAAACAGGATAATGGCGATGTATTTGATGGTCAGAGTTATCAGATTGC TTATAATAAATACCTGACCCAAACATTAACTCGGTTTGGTCTGGCTGCGTATCGGTATTCATCACAGGATTACCGCACAT TTAACGATCATGTCTGGGCCAATAATAAAAATAACTATCGTCGCGATAAGAATGATGTATACGATATTGCTGATTATTAT CAAAACGATTTTGGGCGTAAAAATACGTTTTCAGCTAATGTGAGCCAATCCTTGCCAGAAGGATGGGGCGCAGTATCACT GAGTGCATTATGGCGTGATTACTGGGGACGTAGCGGCACCAGTAAAGATTATCAAATAAGCTATTCCAATACGTTCCAGA AAATTAATTATACGTTATCCGCCAGTCAGACTTACGACGAGGATCATAATGAAGATAAACGTTTTAACCTGTTTATTTCA ATTCCCTTTGACTGGGGGGACGGTATTACTACCCCGCGGCGTCATCTGAATGTGTCGAACTCGACGACCTTTGATGATGA TGGATTTACCTCAAACAATATTGGTTTAACCGGTACGGCAGGCAGTCGCGATCAATTTAATTACGGCGTGAGTGTTAGTC ATCAGCGACACGATAGTGAGACCACTGCGGGGACGAATTTAACCTGGAATACGCCCGTTGCAACGCTTAATGGTAGTTAC AGCCAGTCGTCCAATTATACTCAGACCGGCGGAAGTATTTCCGGTGGGGTTGTAGCCTGGAGTGGCGGGTTGAATTTATC CAGCCGGCTTTCAGATACCTTTGCGATTATGCAGGCTCCGGGACTTGAAGGAGCCTACGTTAACGGCCAAAAATATCGGA CCACCAATAAAAAAGGAACGGTGGTTTATGACAACCTTACGCCATATCGCGAAAACCATCTTATGCTTGATGTGTCGCAA AGTAGCAGTGAAACGGAATTACGCGGTAACCGTAAAGTTGCCGCCCCGTACCGAGGGGCCGTCGTGCTAGTGAATTTTGA TACCGACCAGCGTAAACCATGGTTTATTAAAGCGCAGCGTCCTGATGGTTCGCCTCTTATTTTTGGTTATGATGTAGTAG ATCATCATGGTCATAATGTGGGCATTGTTGGACAAGGTAGTCAGCTATTTATTCGAACGAATGATATTCCGCCCGAAGTC AGTGTACCAGTAGATAAAGAGCAGGGGCTTTCATGTTCAATCACCTTTGGTAAAACGGTTGATGAAAGTAAAGTTTATAT TTGTCGGTAG
Upstream 100 bases:
>100_bases ATGAAATATGCGTCAACAAGCCAGTATGAAGTAACGATTATTGATGATAATGGTAACTATATTAGTAGCAAAATGAATGT AAAATAAACAGGAGTTCATC
Downstream 100 bases:
>100_bases TGGTGAGGTGGTGAAATGAAACTCTTTCTTTTTATCGTGATGTTATTGATTTTACCTGAAACATACGCAGCCTGTACGGG AGAAATTACTTATCAGGATA
Product: outer membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 829; Mature: 829
Protein sequence:
>829_residues MLRMTPIASLVLLTLFTWQTQAIATETFDTHFMVGGMRDQKITNFHLDENKPIPGQYELDIYVNNQWRGKYDIIVADDPG STCISTELLKNIGVISDGLQPQGATDCIALKDVVRSGGYTFNIGVFRLDLSVPQAYVNEVEAGYVLPENWDRGINAFYTS YYASQYYSDYKNSGSSESTYVRFNSGFNLLGWQAHADTTFNKTDGSSGEWKSNTLYLERGIAELLGTLRAGDQYTSSEIF DSVRFTGVRLFRDMQMLPNSKQNFTPLVQGIAQTNALVTIEQNGFVVYQKEVPPGPFSIADLQLAGGGADLDVTVREADG SINTWLVPYASVPNMLQPGVSKYDFSAGRSHIEGADNQADFTQISYQYGLNNLLTLYGGTMLSNHYNAFTLGTGWNTRIG AISLDATRAHSKQDNGDVFDGQSYQIAYNKYLTQTLTRFGLAAYRYSSQDYRTFNDHVWANNKNNYRRDKNDVYDIADYY QNDFGRKNTFSANVSQSLPEGWGAVSLSALWRDYWGRSGTSKDYQISYSNTFQKINYTLSASQTYDEDHNEDKRFNLFIS IPFDWGDGITTPRRHLNVSNSTTFDDDGFTSNNIGLTGTAGSRDQFNYGVSVSHQRHDSETTAGTNLTWNTPVATLNGSY SQSSNYTQTGGSISGGVVAWSGGLNLSSRLSDTFAIMQAPGLEGAYVNGQKYRTTNKKGTVVYDNLTPYRENHLMLDVSQ SSSETELRGNRKVAAPYRGAVVLVNFDTDQRKPWFIKAQRPDGSPLIFGYDVVDHHGHNVGIVGQGSQLFIRTNDIPPEV SVPVDKEQGLSCSITFGKTVDESKVYICR
Sequences:
>Translated_829_residues MLRMTPIASLVLLTLFTWQTQAIATETFDTHFMVGGMRDQKITNFHLDENKPIPGQYELDIYVNNQWRGKYDIIVADDPG STCISTELLKNIGVISDGLQPQGATDCIALKDVVRSGGYTFNIGVFRLDLSVPQAYVNEVEAGYVLPENWDRGINAFYTS YYASQYYSDYKNSGSSESTYVRFNSGFNLLGWQAHADTTFNKTDGSSGEWKSNTLYLERGIAELLGTLRAGDQYTSSEIF DSVRFTGVRLFRDMQMLPNSKQNFTPLVQGIAQTNALVTIEQNGFVVYQKEVPPGPFSIADLQLAGGGADLDVTVREADG SINTWLVPYASVPNMLQPGVSKYDFSAGRSHIEGADNQADFTQISYQYGLNNLLTLYGGTMLSNHYNAFTLGTGWNTRIG AISLDATRAHSKQDNGDVFDGQSYQIAYNKYLTQTLTRFGLAAYRYSSQDYRTFNDHVWANNKNNYRRDKNDVYDIADYY QNDFGRKNTFSANVSQSLPEGWGAVSLSALWRDYWGRSGTSKDYQISYSNTFQKINYTLSASQTYDEDHNEDKRFNLFIS IPFDWGDGITTPRRHLNVSNSTTFDDDGFTSNNIGLTGTAGSRDQFNYGVSVSHQRHDSETTAGTNLTWNTPVATLNGSY SQSSNYTQTGGSISGGVVAWSGGLNLSSRLSDTFAIMQAPGLEGAYVNGQKYRTTNKKGTVVYDNLTPYRENHLMLDVSQ SSSETELRGNRKVAAPYRGAVVLVNFDTDQRKPWFIKAQRPDGSPLIFGYDVVDHHGHNVGIVGQGSQLFIRTNDIPPEV SVPVDKEQGLSCSITFGKTVDESKVYICR >Mature_829_residues MLRMTPIASLVLLTLFTWQTQAIATETFDTHFMVGGMRDQKITNFHLDENKPIPGQYELDIYVNNQWRGKYDIIVADDPG STCISTELLKNIGVISDGLQPQGATDCIALKDVVRSGGYTFNIGVFRLDLSVPQAYVNEVEAGYVLPENWDRGINAFYTS YYASQYYSDYKNSGSSESTYVRFNSGFNLLGWQAHADTTFNKTDGSSGEWKSNTLYLERGIAELLGTLRAGDQYTSSEIF DSVRFTGVRLFRDMQMLPNSKQNFTPLVQGIAQTNALVTIEQNGFVVYQKEVPPGPFSIADLQLAGGGADLDVTVREADG SINTWLVPYASVPNMLQPGVSKYDFSAGRSHIEGADNQADFTQISYQYGLNNLLTLYGGTMLSNHYNAFTLGTGWNTRIG AISLDATRAHSKQDNGDVFDGQSYQIAYNKYLTQTLTRFGLAAYRYSSQDYRTFNDHVWANNKNNYRRDKNDVYDIADYY QNDFGRKNTFSANVSQSLPEGWGAVSLSALWRDYWGRSGTSKDYQISYSNTFQKINYTLSASQTYDEDHNEDKRFNLFIS IPFDWGDGITTPRRHLNVSNSTTFDDDGFTSNNIGLTGTAGSRDQFNYGVSVSHQRHDSETTAGTNLTWNTPVATLNGSY SQSSNYTQTGGSISGGVVAWSGGLNLSSRLSDTFAIMQAPGLEGAYVNGQKYRTTNKKGTVVYDNLTPYRENHLMLDVSQ SSSETELRGNRKVAAPYRGAVVLVNFDTDQRKPWFIKAQRPDGSPLIFGYDVVDHHGHNVGIVGQGSQLFIRTNDIPPEV SVPVDKEQGLSCSITFGKTVDESKVYICR
Specific function: Involved in the export and assembly of a fimbrial subunit across the outer membrane [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1788427, Length=829, Percent_Identity=74.6682750301568, Blast_Score=1339, Evalue=0.0, Organism=Escherichia coli, GI1786332, Length=854, Percent_Identity=32.2014051522248, Blast_Score=404, Evalue=1e-113, Organism=Escherichia coli, GI1790772, Length=796, Percent_Identity=31.6582914572864, Blast_Score=359, Evalue=1e-100, Organism=Escherichia coli, GI1787172, Length=804, Percent_Identity=30.5970149253731, Blast_Score=343, Evalue=3e-95, Organism=Escherichia coli, GI1786744, Length=826, Percent_Identity=30.6295399515738, Blast_Score=320, Evalue=3e-88, Organism=Escherichia coli, GI1789533, Length=769, Percent_Identity=29.9089726918075, Blast_Score=304, Evalue=1e-83, Organism=Escherichia coli, GI87081778, Length=586, Percent_Identity=28.3276450511945, Blast_Score=193, Evalue=3e-50, Organism=Escherichia coli, GI1789610, Length=825, Percent_Identity=23.7575757575758, Blast_Score=133, Evalue=4e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 92259; Mature: 92259
Theoretical pI: Translated: 5.21; Mature: 5.21
Prosite motif: PS01151 FIMBRIAL_USHER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRMTPIASLVLLTLFTWQTQAIATETFDTHFMVGGMRDQKITNFHLDENKPIPGQYELD CCCCCHHHHHHHHHHHHCCCCEEEEECCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEE IYVNNQWRGKYDIIVADDPGSTCISTELLKNIGVISDGLQPQGATDCIALKDVVRSGGYT EEECCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEE FNIGVFRLDLSVPQAYVNEVEAGYVLPENWDRGINAFYTSYYASQYYSDYKNSGSSESTY EEEEEEEEECCCCHHHHHHHHCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEE VRFNSGFNLLGWQAHADTTFNKTDGSSGEWKSNTLYLERGIAELLGTLRAGDQYTSSEIF EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCHHHHH DSVRFTGVRLFRDMQMLPNSKQNFTPLVQGIAQTNALVTIEQNGFVVYQKEVPPGPFSIA HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEEEECCCEEEEECCCCCCCCEEE DLQLAGGGADLDVTVREADGSINTWLVPYASVPNMLQPGVSKYDFSAGRSHIEGADNQAD EEEEECCCCCEEEEEEECCCCEEEEEEECCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC FTQISYQYGLNNLLTLYGGTMLSNHYNAFTLGTGWNTRIGAISLDATRAHSKQDNGDVFD CEEEEHHHCCCHHHHHHCCEEECCCCCEEEECCCCCCEEEEEEECCHHCCCCCCCCCEEC GQSYQIAYNKYLTQTLTRFGLAAYRYSSQDYRTFNDHVWANNKNNYRRDKNDVYDIADYY CCCEEEEHHHHHHHHHHHHHHEEEEECCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHH QNDFGRKNTFSANVSQSLPEGWGAVSLSALWRDYWGRSGTSKDYQISYSNTFQKINYTLS HHCCCCCCEEECCHHHCCCCCCCCEEHHHHHHHHHCCCCCCCCEEEEECCCEEEEEEEEE ASQTYDEDHNEDKRFNLFISIPFDWGDGITTPRRHLNVSNSTTFDDDGFTSNNIGLTGTA CCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCHHHEECCCCCCCCCCCCCCCCCEEEECC GSRDQFNYGVSVSHQRHDSETTAGTNLTWNTPVATLNGSYSQSSNYTQTGGSISGGVVAW CCCCCEECCEEEECCCCCCCCCCCCCEEECCCEEEECCCCCCCCCCEECCCCCCCCEEEE SGGLNLSSRLSDTFAIMQAPGLEGAYVNGQKYRTTNKKGTVVYDNLTPYRENHLMLDVSQ ECCCCCHHHHCCEEEEEECCCCCCEEECCCEEEECCCCCCEEECCCCCCCCCEEEEEECC SSSETELRGNRKVAAPYRGAVVLVNFDTDQRKPWFIKAQRPDGSPLIFGYDVVDHHGHNV CCCCCHHCCCCEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEEEEHHCCCCEE GIVGQGSQLFIRTNDIPPEVSVPVDKEQGLSCSITFGKTVDESKVYICR EEEECCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEC >Mature Secondary Structure MLRMTPIASLVLLTLFTWQTQAIATETFDTHFMVGGMRDQKITNFHLDENKPIPGQYELD CCCCCHHHHHHHHHHHHCCCCEEEEECCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEE IYVNNQWRGKYDIIVADDPGSTCISTELLKNIGVISDGLQPQGATDCIALKDVVRSGGYT EEECCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEE FNIGVFRLDLSVPQAYVNEVEAGYVLPENWDRGINAFYTSYYASQYYSDYKNSGSSESTY EEEEEEEEECCCCHHHHHHHHCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEE VRFNSGFNLLGWQAHADTTFNKTDGSSGEWKSNTLYLERGIAELLGTLRAGDQYTSSEIF EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCHHHHH DSVRFTGVRLFRDMQMLPNSKQNFTPLVQGIAQTNALVTIEQNGFVVYQKEVPPGPFSIA HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEEEECCCEEEEECCCCCCCCEEE DLQLAGGGADLDVTVREADGSINTWLVPYASVPNMLQPGVSKYDFSAGRSHIEGADNQAD EEEEECCCCCEEEEEEECCCCEEEEEEECCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC FTQISYQYGLNNLLTLYGGTMLSNHYNAFTLGTGWNTRIGAISLDATRAHSKQDNGDVFD CEEEEHHHCCCHHHHHHCCEEECCCCCEEEECCCCCCEEEEEEECCHHCCCCCCCCCEEC GQSYQIAYNKYLTQTLTRFGLAAYRYSSQDYRTFNDHVWANNKNNYRRDKNDVYDIADYY CCCEEEEHHHHHHHHHHHHHHEEEEECCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHH QNDFGRKNTFSANVSQSLPEGWGAVSLSALWRDYWGRSGTSKDYQISYSNTFQKINYTLS HHCCCCCCEEECCHHHCCCCCCCCEEHHHHHHHHHCCCCCCCCEEEEECCCEEEEEEEEE ASQTYDEDHNEDKRFNLFISIPFDWGDGITTPRRHLNVSNSTTFDDDGFTSNNIGLTGTA CCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCHHHEECCCCCCCCCCCCCCCCCEEEECC GSRDQFNYGVSVSHQRHDSETTAGTNLTWNTPVATLNGSYSQSSNYTQTGGSISGGVVAW CCCCCEECCEEEECCCCCCCCCCCCCEEECCCEEEECCCCCCCCCCEECCCCCCCCEEEE SGGLNLSSRLSDTFAIMQAPGLEGAYVNGQKYRTTNKKGTVVYDNLTPYRENHLMLDVSQ ECCCCCHHHHCCEEEEEECCCCCCEEECCCEEEECCCCCCEEECCCCCCCCCEEEEEECC SSSETELRGNRKVAAPYRGAVVLVNFDTDQRKPWFIKAQRPDGSPLIFGYDVVDHHGHNV CCCCCHHCCCCEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEEEEHHCCCCEE GIVGQGSQLFIRTNDIPPEVSVPVDKEQGLSCSITFGKTVDESKVYICR EEEECCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503; 9097040 [H]