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The map label for this gene is stcB [H]

Identifier: 16765480

GI number: 16765480

Start: 2246358

End: 2247041

Strand: Reverse

Name: stcB [H]

Synonym: STM2151

Alternate gene names: 16765480

Gene position: 2247041-2246358 (Counterclockwise)

Preceding gene: 16765481

Following gene: 16765479

Centisome position: 46.26

GC content: 40.2

Gene sequence:

>684_bases
ATGAAAATATTATCTGCAGTATTATTATCTGCCATAATTTTGCCTGCGCATGCTGGTATTGTTATTTATGGTACGCGTGT
GATTTACCCGGCAGAGAAGAAAGAAGTCGTTGTACAATTGGTGAATCAGGGCGAGCAAGCTTCGCTGGTACAGTCCTGGA
TTGATGACGGTAACACTTCATTACCGCCAGAAAAAATTCAGGTGCCATTTATGCTGACGCCGCCAGTGGCGCGCGTTGCC
GCTGAGTCTGGTCAGCAGATCAAAATCAAGAAAATGCCTAATAGCTTACCGGACAACAAAGAAAGTCTGTTTTATCTGAA
TGTGCTTGATATTCCACCAAACAGCCAGGAAAACGCCGGTAAAAATGTGCTTAAATTCGCAATGCAGAATCGAATAAAAT
TAATATGGCGCCCCAGTCGAATTGCCGCCGTAACCAAAGACAGTTTTCAGAGGATTGGTTTATTTCGCAGTAATAAAGCT
GTCATCATGAAAAATGATACTGCAAACTGGATTACCGTGACGGATGTAAAAGCAGGAAATACTAAGATTAATGATCAAAC
TATCATGCTGCCACCGCTATCGACGCAAAATATTAACATGAAATATGCGTCAACAAGCCAGTATGAAGTAACGATTATTG
ATGATAATGGTAACTATATTAGTAGCAAAATGAATGTAAAATAA

Upstream 100 bases:

>100_bases
GGTGATGTTAGCTCAACACTGACTTTAACGGTTGTTACTGACTAATTTATTCAACCGGCGGCGTTCGTCGCCGGTTTTTT
ATAAGCAAGGCCGTGTAAAT

Downstream 100 bases:

>100_bases
ACAGGAGTTCATCATGCTAAGGATGACGCCCATCGCTTCGCTTGTTTTATTGACTCTGTTTACCTGGCAAACGCAGGCTA
TCGCGACGGAAACGTTTGAT

Product: periplasmic chaperone protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MKILSAVLLSAIILPAHAGIVIYGTRVIYPAEKKEVVVQLVNQGEQASLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVA
AESGQQIKIKKMPNSLPDNKESLFYLNVLDIPPNSQENAGKNVLKFAMQNRIKLIWRPSRIAAVTKDSFQRIGLFRSNKA
VIMKNDTANWITVTDVKAGNTKINDQTIMLPPLSTQNINMKYASTSQYEVTIIDDNGNYISSKMNVK

Sequences:

>Translated_227_residues
MKILSAVLLSAIILPAHAGIVIYGTRVIYPAEKKEVVVQLVNQGEQASLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVA
AESGQQIKIKKMPNSLPDNKESLFYLNVLDIPPNSQENAGKNVLKFAMQNRIKLIWRPSRIAAVTKDSFQRIGLFRSNKA
VIMKNDTANWITVTDVKAGNTKINDQTIMLPPLSTQNINMKYASTSQYEVTIIDDNGNYISSKMNVK
>Mature_227_residues
MKILSAVLLSAIILPAHAGIVIYGTRVIYPAEKKEVVVQLVNQGEQASLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVA
AESGQQIKIKKMPNSLPDNKESLFYLNVLDIPPNSQENAGKNVLKFAMQNRIKLIWRPSRIAAVTKDSFQRIGLFRSNKA
VIMKNDTANWITVTDVKAGNTKINDQTIMLPPLSTQNINMKYASTSQYEVTIIDDNGNYISSKMNVK

Specific function: Could be required for the biogenesis of a putative fimbria [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1788428, Length=224, Percent_Identity=64.2857142857143, Blast_Score=311, Evalue=3e-86,
Organism=Escherichia coli, GI1786333, Length=231, Percent_Identity=33.3333333333333, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1789532, Length=223, Percent_Identity=29.5964125560538, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1790771, Length=204, Percent_Identity=28.4313725490196, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1788677, Length=203, Percent_Identity=33.9901477832512, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1786936, Length=229, Percent_Identity=27.5109170305677, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1786743, Length=224, Percent_Identity=29.0178571428571, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI87082203, Length=237, Percent_Identity=29.1139240506329, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787171, Length=218, Percent_Identity=27.5229357798165, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87081806, Length=224, Percent_Identity=23.2142857142857, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 25210; Mature: 25210

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILSAVLLSAIILPAHAGIVIYGTRVIYPAEKKEVVVQLVNQGEQASLVQSWIDDGNTS
CHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHCCCCCC
LPPEKIQVPFMLTPPVARVAAESGQQIKIKKMPNSLPDNKESLFYLNVLDIPPNSQENAG
CCHHHEEEEEEECCCHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCH
KNVLKFAMQNRIKLIWRPSRIAAVTKDSFQRIGLFRSNKAVIMKNDTANWITVTDVKAGN
HHHHHHHHHCCEEEEEECCCEEEECHHHHHHHCEEECCCEEEEECCCCCEEEEEEEECCC
TKINDQTIMLPPLSTQNINMKYASTSQYEVTIIDDNGNYISSKMNVK
CEECCCEEEECCCCCCCEEEEEECCCEEEEEEEECCCCEEECEECCC
>Mature Secondary Structure
MKILSAVLLSAIILPAHAGIVIYGTRVIYPAEKKEVVVQLVNQGEQASLVQSWIDDGNTS
CHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHCCCCCC
LPPEKIQVPFMLTPPVARVAAESGQQIKIKKMPNSLPDNKESLFYLNVLDIPPNSQENAG
CCHHHEEEEEEECCCHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCH
KNVLKFAMQNRIKLIWRPSRIAAVTKDSFQRIGLFRSNKAVIMKNDTANWITVTDVKAGN
HHHHHHHHHCCEEEEEECCCEEEECHHHHHHHCEEECCCEEEEECCCCCEEEEEEEECCC
TKINDQTIMLPPLSTQNINMKYASTSQYEVTIIDDNGNYISSKMNVK
CEECCCEEEECCCCCCCEEEEEECCCEEEEEEEECCCCEEECEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]