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The map label for this gene is cdaR [H]

Identifier: 16763600

GI number: 16763600

Start: 246072

End: 247229

Strand: Direct

Name: cdaR [H]

Synonym: STM0210

Alternate gene names: 16763600

Gene position: 246072-247229 (Clockwise)

Preceding gene: 16763599

Following gene: 16763602

Centisome position: 5.07

GC content: 55.7

Gene sequence:

>1158_bases
ATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCGCGCACTATGCGCATCATCGATACCAATATCAA
CGTAATGGATGCCCGCGGGCGCATTATCGGCAGCGGCGATCGGGAACGTATTGGTGAATTGCACGAAGGCGCGCTGTTAG
TGCTGTCGCAGGGCCGGGTTGTGGATATCGACGACGCCGTGGCGCGACACCTGCACGGGGTGCGTCAGGGGATTAATCTT
CCCTTACGTCTTGAGGGCGAAATTGTCGGCGTGATCGGCCTCACCGGCGAACCAGAGCACCTGCGTAAATATGGCGAACT
GGTGTGTATGACTGCCGAAATGATGCTGGAGCAGTCGCGGTTAATGCACCTTTTGGCGCAGGATAGCCGTTTGCGCGAAG
AGTTGGTGATGAACCTGATTCAGGCCGAAGAAAATACGCCGGCGCTGGTGGAATGGGCGCAGCGTTTGGGGATCGATTTG
AACCAGCCGCGTGTGGCGGCGGTGGTGGAAGTCGACAGCGGCCAGCTTGGCGTCGATAGCGCAATGGCGGAACTTCAGCA
GTTGCAGAATGCGCTTACCACGCCGGAGCGTAACAACCTGATAGCCATTGTTTCTCTCACCGAGATGGTGGTACTCAAAC
CCGCCTTAAACTCGTTTGGTCGTTGGGATGCTGAAGATCATCGTAAGCGCGTAGAGCAGCTTATCTCGCGCATGAAAGAG
AATGGTCAGCTACGTTTTCGCGTGGCGCTGGGCAATTACTTTACCGGGCCGGGCAGTATTGCACGCTCATACCGCACGGC
GCGCACCACGATGATGGTCGGCAAACAGCGAATGCCAGAGAGCCGCAGCTATTTTTATCAGGATTTGATGCTGCCGGTCC
TGTTAGATAGCCTGCGTGGCGGCTGGCAGGCCAATGAGCTGGCGCGCCCGCTGGTAAAACTCAAAGCGATGGATAACAAC
GGGTTATTACGTCGGACGCTGACGGCGTGGTTTCGCCATAATGTCCAGCCGCTGGCGACCTCTAAGGCGCTGTTTATTCA
TCGTAACACGCTGGAATATCGGCTAAATCGTATTTCGGAACTGACCGGGCTGGATTTGGGAAATTTTGACGATCGGCTGT
TGCTGTATGTGGCGCTACAACTGGATGAACAGCGTTAA

Upstream 100 bases:

>100_bases
CCCCCACAACTCCATACTTATTTGCACCGTTTTGTGCATTTGCACAATGTCGAGACCTGTCATCTTCCTTATGCTTGTGC
TCTGCTCACAGGAGGGATTT

Downstream 100 bases:

>100_bases
GCCCGGCGGCGCTACGCTTATCAGGCCTACGGGGATATATCTGTAGGCCGGATAAGGCGTAACACGTCGCCATCCGGCAA
CACACAGCTTACTTACGGGT

Product: carbohydrate diacid transcriptional activator CdaR

Products: NA

Alternate protein names: Sugar diacid regulator [H]

Number of amino acids: Translated: 385; Mature: 384

Protein sequence:

>385_residues
MAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALLVLSQGRVVDIDDAVARHLHGVRQGINL
PLRLEGEIVGVIGLTGEPEHLRKYGELVCMTAEMMLEQSRLMHLLAQDSRLREELVMNLIQAEENTPALVEWAQRLGIDL
NQPRVAAVVEVDSGQLGVDSAMAELQQLQNALTTPERNNLIAIVSLTEMVVLKPALNSFGRWDAEDHRKRVEQLISRMKE
NGQLRFRVALGNYFTGPGSIARSYRTARTTMMVGKQRMPESRSYFYQDLMLPVLLDSLRGGWQANELARPLVKLKAMDNN
GLLRRTLTAWFRHNVQPLATSKALFIHRNTLEYRLNRISELTGLDLGNFDDRLLLYVALQLDEQR

Sequences:

>Translated_385_residues
MAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALLVLSQGRVVDIDDAVARHLHGVRQGINL
PLRLEGEIVGVIGLTGEPEHLRKYGELVCMTAEMMLEQSRLMHLLAQDSRLREELVMNLIQAEENTPALVEWAQRLGIDL
NQPRVAAVVEVDSGQLGVDSAMAELQQLQNALTTPERNNLIAIVSLTEMVVLKPALNSFGRWDAEDHRKRVEQLISRMKE
NGQLRFRVALGNYFTGPGSIARSYRTARTTMMVGKQRMPESRSYFYQDLMLPVLLDSLRGGWQANELARPLVKLKAMDNN
GLLRRTLTAWFRHNVQPLATSKALFIHRNTLEYRLNRISELTGLDLGNFDDRLLLYVALQLDEQR
>Mature_384_residues
AGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALLVLSQGRVVDIDDAVARHLHGVRQGINLP
LRLEGEIVGVIGLTGEPEHLRKYGELVCMTAEMMLEQSRLMHLLAQDSRLREELVMNLIQAEENTPALVEWAQRLGIDLN
QPRVAAVVEVDSGQLGVDSAMAELQQLQNALTTPERNNLIAIVSLTEMVVLKPALNSFGRWDAEDHRKRVEQLISRMKEN
GQLRFRVALGNYFTGPGSIARSYRTARTTMMVGKQRMPESRSYFYQDLMLPVLLDSLRGGWQANELARPLVKLKAMDNNG
LLRRTLTAWFRHNVQPLATSKALFIHRNTLEYRLNRISELTGLDLGNFDDRLLLYVALQLDEQR

Specific function: Seems to regulate the expression of the operons for the enzymes involved in D-galactarate, D-glucarate and D-glycerate utilization [H]

COG id: COG3835

COG function: function code KT; Sugar diacid utilization regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=385, Percent_Identity=95.5844155844156, Blast_Score=753, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008599 [H]

Pfam domain/function: PF05651 Diacid_rec [H]

EC number: NA

Molecular weight: Translated: 43587; Mature: 43456

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALLVLSQGRV
CCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCEECCCCHHHHHHHCCCEEEEEECCCE
VDIDDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPEHLRKYGELVCMTAEMMLEQSR
EECHHHHHHHHHHHHHCCCCCEEECCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
LMHLLAQDSRLREELVMNLIQAEENTPALVEWAQRLGIDLNQPRVAAVVEVDSGQLGVDS
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHH
AMAELQQLQNALTTPERNNLIAIVSLTEMVVLKPALNSFGRWDAEDHRKRVEQLISRMKE
HHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
NGQLRFRVALGNYFTGPGSIARSYRTARTTMMVGKQRMPESRSYFYQDLMLPVLLDSLRG
CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
GWQANELARPLVKLKAMDNNGLLRRTLTAWFRHNVQPLATSKALFIHRNTLEYRLNRISE
CCCHHHHHHHHHHEEECCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHH
LTGLDLGNFDDRLLLYVALQLDEQR
HHCCCCCCCCCCEEEEEEEECCCCC
>Mature Secondary Structure 
AGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALLVLSQGRV
CCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCEECCCCHHHHHHHCCCEEEEEECCCE
VDIDDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPEHLRKYGELVCMTAEMMLEQSR
EECHHHHHHHHHHHHHCCCCCEEECCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
LMHLLAQDSRLREELVMNLIQAEENTPALVEWAQRLGIDLNQPRVAAVVEVDSGQLGVDS
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHH
AMAELQQLQNALTTPERNNLIAIVSLTEMVVLKPALNSFGRWDAEDHRKRVEQLISRMKE
HHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
NGQLRFRVALGNYFTGPGSIARSYRTARTTMMVGKQRMPESRSYFYQDLMLPVLLDSLRG
CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
GWQANELARPLVKLKAMDNNGLLRRTLTAWFRHNVQPLATSKALFIHRNTLEYRLNRISE
CCCHHHHHHHHHHEEECCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHH
LTGLDLGNFDDRLLLYVALQLDEQR
HHCCCCCCCCCCEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503; 10762278 [H]