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The map label for this gene is bcfD [H]

Identifier: 16763414

GI number: 16763414

Start: 28425

End: 29432

Strand: Direct

Name: bcfD [H]

Synonym: STM0024

Alternate gene names: 16763414

Gene position: 28425-29432 (Clockwise)

Preceding gene: 16763413

Following gene: 16763415

Centisome position: 0.59

GC content: 50.1

Gene sequence:

>1008_bases
ATGAAAATACCTCTTTTATTTGCTCTGCTGGCGGGAAGTGTCGTATCGCAGTACGCCTTCGCAGACGTGTGTAAAAACGT
TAACGGCGTGCCTTCCAGTATTAATTACGATTTAACGACCACTCTGACGGCAGAACAAAACCAGGTGGGAAAGACGGTTC
AACTGGAAAAAAGCCAGGAAGTTAATGTACAGGCGGTGTGTCCCGCCGGCGCGTCGACCTATAGCCAGACTTATCGCTCC
TATGTGTCGCCATATCCGGTCGTAGAAACGAGCGGTAACTGGAAATATTTAAAGCTGGACCCGGACTACCTTGAAGGCGG
AATGCGAATTGAGGATTCTTCGGCGGGCGATATCTATCCGCCAATGAACAATGTCCTGATGGGATATGATGAAAATGTGA
AAGCGGGTCAACCGTTTTACGTTCGTGACTCAAATCTGGAGTTTCAGCTCAAAATTGTTAAACCGTTCGTCGGCACGGTG
AATATTAGTCCTAAGACTATGTTTAATGTTTATGTCATGACCGCCGCAGGCGATCCGCTGACAGATGTCGTGTACAGCAT
TCTTTATAGTGGAACGGTGACCGTACCGCAAAGCTGTGAAATCAACGCCGGACAAACGATTCTGGTAAATTTCGGCGCAT
TATACAGCGGCAATTTCAACCATGCAGGCCAAAAGCCGGAGGGGGTACGAGCGAAAAAATTCAGCGTACCGGTAAAGTGC
AGCGGTCTGGATTCGCAGGTCAATTTAACAATGCGTCTTATCGCTACGCCGGATAGCCACGTTCCCCAGGCTATCGCTTC
GGATAATGCCGATGTCGGCGTAGTGGTCGAAACCGATGAAGGAAACGCGCTTATCCCCAATGATGTACAGAGCGTCGCGC
CTTTTATCACCGATAGCGCCGGACGCGCTAACATCACATTGCAGGCCTACCCGGTAAGTACAACAGGCGAAACGCCTGCG
GAAGGGGCATTTACCGCACTGGCCAGCCTGCGAGTGGACTTTGACTAA

Upstream 100 bases:

>100_bases
CGTTCGCTGGGGGAACCTACCGGATCAACAGTGCGTCGCGTCCTATCATCTCTCTTCCTCCCGTCAGATTCTGAGTCGAC
AACATGCGGAGTGTCATTAA

Downstream 100 bases:

>100_bases
ATGAACAGATCACACTGCGCTCTTTTTGCCATGGGACTGATGCTGTGTCCACAAATCAATGCCAGCGCTGACGACCTCGC
TTATAACCTCGAATTTACCG

Product: fimbrial subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MKIPLLFALLAGSVVSQYAFADVCKNVNGVPSSINYDLTTTLTAEQNQVGKTVQLEKSQEVNVQAVCPAGASTYSQTYRS
YVSPYPVVETSGNWKYLKLDPDYLEGGMRIEDSSAGDIYPPMNNVLMGYDENVKAGQPFYVRDSNLEFQLKIVKPFVGTV
NISPKTMFNVYVMTAAGDPLTDVVYSILYSGTVTVPQSCEINAGQTILVNFGALYSGNFNHAGQKPEGVRAKKFSVPVKC
SGLDSQVNLTMRLIATPDSHVPQAIASDNADVGVVVETDEGNALIPNDVQSVAPFITDSAGRANITLQAYPVSTTGETPA
EGAFTALASLRVDFD

Sequences:

>Translated_335_residues
MKIPLLFALLAGSVVSQYAFADVCKNVNGVPSSINYDLTTTLTAEQNQVGKTVQLEKSQEVNVQAVCPAGASTYSQTYRS
YVSPYPVVETSGNWKYLKLDPDYLEGGMRIEDSSAGDIYPPMNNVLMGYDENVKAGQPFYVRDSNLEFQLKIVKPFVGTV
NISPKTMFNVYVMTAAGDPLTDVVYSILYSGTVTVPQSCEINAGQTILVNFGALYSGNFNHAGQKPEGVRAKKFSVPVKC
SGLDSQVNLTMRLIATPDSHVPQAIASDNADVGVVVETDEGNALIPNDVQSVAPFITDSAGRANITLQAYPVSTTGETPA
EGAFTALASLRVDFD
>Mature_335_residues
MKIPLLFALLAGSVVSQYAFADVCKNVNGVPSSINYDLTTTLTAEQNQVGKTVQLEKSQEVNVQAVCPAGASTYSQTYRS
YVSPYPVVETSGNWKYLKLDPDYLEGGMRIEDSSAGDIYPPMNNVLMGYDENVKAGQPFYVRDSNLEFQLKIVKPFVGTV
NISPKTMFNVYVMTAAGDPLTDVVYSILYSGTVTVPQSCEINAGQTILVNFGALYSGNFNHAGQKPEGVRAKKFSVPVKC
SGLDSQVNLTMRLIATPDSHVPQAIASDNADVGVVVETDEGNALIPNDVQSVAPFITDSAGRANITLQAYPVSTTGETPA
EGAFTALASLRVDFD

Specific function: Involved in regulation of length and mediation of adhesion of type 1 fimbriae (but not necessary for the production of fimbriae). Seems to be a mannose-binding adhesin [H]

COG id: COG3539

COG function: function code NU; P pilus assembly protein, pilin FimA

Gene ontology:

Cell location: Fimbrium [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693100, Length=328, Percent_Identity=43.5975609756098, Blast_Score=255, Evalue=3e-69,
Organism=Escherichia coli, GI1787173, Length=337, Percent_Identity=31.4540059347181, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1789534, Length=208, Percent_Identity=31.25, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35929; Mature: 35929

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIPLLFALLAGSVVSQYAFADVCKNVNGVPSSINYDLTTTLTAEQNQVGKTVQLEKSQE
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCEEEECCCCC
VNVQAVCPAGASTYSQTYRSYVSPYPVVETSGNWKYLKLDPDYLEGGMRIEDSSAGDIYP
CCEEEECCCCCHHHHHHHHHHCCCCCEEEECCCEEEEEECHHHHCCCCEEECCCCCCCCC
PMNNVLMGYDENVKAGQPFYVRDSNLEFQLKIVKPFVGTVNISPKTMFNVYVMTAAGDPL
CCCCEEECCCCCCCCCCCEEEECCCCEEEEEEECCCEEEEECCCCEEEEEEEEEECCCCH
TDVVYSILYSGTVTVPQSCEINAGQTILVNFGALYSGNFNHAGQKPEGVRAKKFSVPVKC
HHHHHHHHHCCEEECCCCCCCCCCCEEEEEECEEECCCCCCCCCCCCCCCEEEEECCEEE
SGLDSQVNLTMRLIATPDSHVPQAIASDNADVGVVVETDEGNALIPNDVQSVAPFITDSA
CCCCCCEEEEEEEEECCCCCCCHHHHCCCCCEEEEEEECCCCEECCCCHHHHHHHHCCCC
GRANITLQAYPVSTTGETPAEGAFTALASLRVDFD
CCEEEEEEEEECCCCCCCCCCHHHEEEEEEEEECC
>Mature Secondary Structure
MKIPLLFALLAGSVVSQYAFADVCKNVNGVPSSINYDLTTTLTAEQNQVGKTVQLEKSQE
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCEEEECCCCC
VNVQAVCPAGASTYSQTYRSYVSPYPVVETSGNWKYLKLDPDYLEGGMRIEDSSAGDIYP
CCEEEECCCCCHHHHHHHHHHCCCCCEEEECCCEEEEEECHHHHCCCCEEECCCCCCCCC
PMNNVLMGYDENVKAGQPFYVRDSNLEFQLKIVKPFVGTVNISPKTMFNVYVMTAAGDPL
CCCCEEECCCCCCCCCCCEEEECCCCEEEEEEECCCEEEEECCCCEEEEEEEEEECCCCH
TDVVYSILYSGTVTVPQSCEINAGQTILVNFGALYSGNFNHAGQKPEGVRAKKFSVPVKC
HHHHHHHHHCCEEECCCCCCCCCCCEEEEEECEEECCCCCCCCCCCCCCCEEEEECCEEE
SGLDSQVNLTMRLIATPDSHVPQAIASDNADVGVVVETDEGNALIPNDVQSVAPFITDSA
CCCCCCEEEEEEEEECCCCCCCHHHHCCCCCEEEEEEECCCCEECCCCHHHHHHHHCCCC
GRANITLQAYPVSTTGETPAEGAFTALASLRVDFD
CCEEEEEEEEECCCCCCCCCCHHHEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]