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The map label for this gene is virF

Identifier: 16119971

GI number: 16119971

Start: 172489

End: 173427

Strand: Direct

Name: virF

Synonym: Atu6154

Alternate gene names: NA

Gene position: 172489-173427 (Clockwise)

Preceding gene: 159161990

Following gene: 159161992

Centisome position: 80.51

GC content: 51.01

Gene sequence:

>939_bases
ATGGAGCCCAGCCAACGAAGCTTAAGTGATGAATCCGAAGCGTCCCGTACGGAAGTCCATTCTACATCGACAAATAGGGA
TATGCCTCCCGAGCTTTTGGCTAAGGTGGCAACTTATATTCCTACCCAGGACCCGGTAGAAACGGCACGAAATCTTGGAA
GCCTGGAACGTACAGGGCGTGCAGGTCGTGAAGCCGTTACAAGTGATCCCGTCGGAAAATATCACGCGCGAATGAAACGA
ATTGGCGCCTCCGCCAAAACCGTGTTCGATACGGTCATTCCCGGAAATCAATTACCTGAGTGGGAGACGAACCGACCCTC
TCCGACGGCCAGAACGCGAGCCGTTGGCCCAATTCTTAAGTTCCAGTCTGAAGCGGGAAAATCGAGATTTGTCACCAATA
TACTCAATTTGCCTGAATCTGCTCAGTGCGACGCAATTCTTAGTGTCATAAAACACTTGAATGATCTTGGTGAAGCAAAC
AAGACGCGACTTATCGAACGCTCTATCGAAATTTTGCGGCTAGAACCCCCTTTGACCTGGAATATGGGCCAGAAATGCCC
TGCGGTCGACGTGCTGGTCCAAGGCGAAAAGTACCTAAATGCGGATCAACTGGCTCGCATACAACAAGAGAGGAGCAGCC
GTCCGCGGCTGTCTCCCCTGTTTGGCCGAGCCATAGCCGATTTCGAGGTTCAAAAAACCATGGACGCAAATCCTAGACGA
TATAGGGACGCGGCGGGGCCTGAGGTCAGAGCTGTAGACACAGTAATTGAGACAATTGAGAGATATAGTGCGTCGTTAGC
AAGAGGCGGTCCAAATGCAGTGGGACTCCTAACGACGAACGAAAGCTTTGAGAAAAATATCAATGAGGTCTACAACCGTA
CGCGAGCCGAGCTAGACGCTTCTTCACGTGACAGAAGTCGCTCTGGACTATCGCGATAA

Upstream 100 bases:

>100_bases
ATCACAGGTTGTTAATTGCAAAAGTAATACAATAAAAATTGAGGCTCTCTCTTTATCACAGTAGGTTCCGACCGATTGAG
AGAAAGAAGGAGCATGCACG

Downstream 100 bases:

>100_bases
TTTCCTGGATCCACCGCGCTGTTGTAAGTTGACACATCGCATCGTCTTGCCGCTGACGGGACTTTTGGGGACGTCTTTAG
TTGAACCGCCCCATGACGCG

Product: exported virulence protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MEPSQRSLSDESEASRTEVHSTSTNRDMPPELLAKVATYIPTQDPVETARNLGSLERTGRAGREAVTSDPVGKYHARMKR
IGASAKTVFDTVIPGNQLPEWETNRPSPTARTRAVGPILKFQSEAGKSRFVTNILNLPESAQCDAILSVIKHLNDLGEAN
KTRLIERSIEILRLEPPLTWNMGQKCPAVDVLVQGEKYLNADQLARIQQERSSRPRLSPLFGRAIADFEVQKTMDANPRR
YRDAAGPEVRAVDTVIETIERYSASLARGGPNAVGLLTTNESFEKNINEVYNRTRAELDASSRDRSRSGLSR

Sequences:

>Translated_312_residues
MEPSQRSLSDESEASRTEVHSTSTNRDMPPELLAKVATYIPTQDPVETARNLGSLERTGRAGREAVTSDPVGKYHARMKR
IGASAKTVFDTVIPGNQLPEWETNRPSPTARTRAVGPILKFQSEAGKSRFVTNILNLPESAQCDAILSVIKHLNDLGEAN
KTRLIERSIEILRLEPPLTWNMGQKCPAVDVLVQGEKYLNADQLARIQQERSSRPRLSPLFGRAIADFEVQKTMDANPRR
YRDAAGPEVRAVDTVIETIERYSASLARGGPNAVGLLTTNESFEKNINEVYNRTRAELDASSRDRSRSGLSR
>Mature_312_residues
MEPSQRSLSDESEASRTEVHSTSTNRDMPPELLAKVATYIPTQDPVETARNLGSLERTGRAGREAVTSDPVGKYHARMKR
IGASAKTVFDTVIPGNQLPEWETNRPSPTARTRAVGPILKFQSEAGKSRFVTNILNLPESAQCDAILSVIKHLNDLGEAN
KTRLIERSIEILRLEPPLTWNMGQKCPAVDVLVQGEKYLNADQLARIQQERSSRPRLSPLFGRAIADFEVQKTMDANPRR
YRDAAGPEVRAVDTVIETIERYSASLARGGPNAVGLLTTNESFEKNINEVYNRTRAELDASSRDRSRSGLSR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34609; Mature: 34609

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPSQRSLSDESEASRTEVHSTSTNRDMPPELLAKVATYIPTQDPVETARNLGSLERTGR
CCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
AGREAVTSDPVGKYHARMKRIGASAKTVFDTVIPGNQLPEWETNRPSPTARTRAVGPILK
HHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
FQSEAGKSRFVTNILNLPESAQCDAILSVIKHLNDLGEANKTRLIERSIEILRLEPPLTW
HHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEECCCCCCC
NMGQKCPAVDVLVQGEKYLNADQLARIQQERSSRPRLSPLFGRAIADFEVQKTMDANPRR
CCCCCCCHHHEEECCCHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHH
YRDAAGPEVRAVDTVIETIERYSASLARGGPNAVGLLTTNESFEKNINEVYNRTRAELDA
HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCC
SSRDRSRSGLSR
CHHHHHHCCCCC
>Mature Secondary Structure
MEPSQRSLSDESEASRTEVHSTSTNRDMPPELLAKVATYIPTQDPVETARNLGSLERTGR
CCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
AGREAVTSDPVGKYHARMKRIGASAKTVFDTVIPGNQLPEWETNRPSPTARTRAVGPILK
HHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
FQSEAGKSRFVTNILNLPESAQCDAILSVIKHLNDLGEANKTRLIERSIEILRLEPPLTW
HHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEECCCCCCC
NMGQKCPAVDVLVQGEKYLNADQLARIQQERSSRPRLSPLFGRAIADFEVQKTMDANPRR
CCCCCCCHHHEEECCCHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHH
YRDAAGPEVRAVDTVIETIERYSASLARGGPNAVGLLTTNESFEKNINEVYNRTRAELDA
HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCC
SSRDRSRSGLSR
CHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA