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The map label for this gene is virD2

Identifier: 16119798

GI number: 16119798

Start: 196503

End: 197846

Strand: Direct

Name: virD2

Synonym: Atu6182

Alternate gene names: 16119798

Gene position: 196503-197846 (Clockwise)

Preceding gene: 41223311

Following gene: 159162000

Centisome position: 91.72

GC content: 58.26

Gene sequence:

>1344_bases
ATGCCCGATCGAGCTCAAGTTATCATTCGCATTGTGCCGGGAGGTGGCACCAAGACCCTTCAACAAATTATCAATCAGTT
GGAGTATCTATCCCGGAAGGGCAGGCTGGAGCTGCAGCGTTCAGCCCGACATCTCGATATTCCCCTGCCACCGGATCAAA
TCCACGAACTTGCCCGAAGCTGGGTTCAAGAGACTGGAACTTATGACGAAAGTCAGCCAGACGAGGAAAGGCAACAGGAG
TTGACCACCCATATTATTGTAAGCTTCCCCGCCGGTACAAGCCAGGTAGCGGCTTATGCGGCGAGCCGGGAGTGGGCAGC
CGAGATGTTTGGGTCAGGCGCAGGGGGGGGCCGATACAACTATCTTACGGCCTTCCACATCGATCGCGACCACCCACATC
TGCATGTCGTCGTCAATCGGCGCGAACTTTTAGGACACGGCTGGCTGAAGATATCTCGGCGCCATCCCCAACTGAATTAC
GACGCCCTGCGCATAAAGATGGCCGAGATTTCACTTCGTCATGGCATTGCCCTCGATGCGAGCCGACGAGCAGAACGTGG
CATCACCGAGCGGCCGATCACTTATGCCCAATATCGGCGCCTTGAGCGGGAGCAGGCTCGCCAAATCCGTTTCGAAGACG
CGGATTTGGAACAGTCGTCGCCGCAAGGAGATCATCCAGAATTCAGCCAACCTTTCGATACATCCCCATTTGAAGCATCC
GCGGGCGGACCGGAGGACATGCCTCGGCCCAACAATCGGCAGAATGAGTCGCAAGTTCATCTCCAGGAGCCAGCTGGTGT
CAGCAACGAAGCCGGTGTCCTTGTGCGGGTTGCATTGGAGACGGAGCGCCTTGCTCAACCATTCGTTTCCGAAACCATTC
TCGCGGACGACATAGGGAGCGGCTCTTCGCGTGTTGCCGAGGGCCGTGTGGAGAGCGCAAACCGCACTCCCGATATTCCT
CGCGCAGCAACTGAAGCTGCCACGCACACGACACACGACCGGCAGCGGCGTGCAAAGCGTCCTCATGATGACGACGGAGG
GCCGAGTGGAGCAAAACGTGTGACATTGGAAGGCATCGCGGTTGGGCCCCAGGCGAACGCCGGCGAACAGGATGGCAGTA
GTGGCCCCTTAGTACGGCAAGCTGGAACGTCTCGGCCATCTCCACCGACGGCCACGACGCGGGCCAGCACCGCAACCGAT
TCATTGTCTGCTACAGCCCACCTCCAGCAACGGAGAGGTGTCCTTTCAAAGCGTCCGCGTGAAGATGATGATGGAGAACC
GAGTGAACGCAAACGCGAGAGAGATGAGCGCAGCAAGGACGGGCGTGGGGGAAATAGGAGATAG

Upstream 100 bases:

>100_bases
CCGTTCCATTTTGTCCGTATCACGGCGGCGGATCGACGGTTGCTCGCTGCTGAAAGACGCCTTGTAGCACTGACGTAGCA
CTTGGCGGGGAACATATTCG

Downstream 100 bases:

>100_bases
AGAAGGACCGAGTGATGGCAAATGAAGAGTTCACCAGACACTATGCGTGGCCCGTTCCTGTGGCTTCGAATGATGAAGGG
CGTGGGACCGCGCGGATCCC

Product: type IV secretion system T-DNA border endonuclease VirD2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 446

Protein sequence:

>447_residues
MPDRAQVIIRIVPGGGTKTLQQIINQLEYLSRKGRLELQRSARHLDIPLPPDQIHELARSWVQETGTYDESQPDEERQQE
LTTHIIVSFPAGTSQVAAYAASREWAAEMFGSGAGGGRYNYLTAFHIDRDHPHLHVVVNRRELLGHGWLKISRRHPQLNY
DALRIKMAEISLRHGIALDASRRAERGITERPITYAQYRRLEREQARQIRFEDADLEQSSPQGDHPEFSQPFDTSPFEAS
AGGPEDMPRPNNRQNESQVHLQEPAGVSNEAGVLVRVALETERLAQPFVSETILADDIGSGSSRVAEGRVESANRTPDIP
RAATEAATHTTHDRQRRAKRPHDDDGGPSGAKRVTLEGIAVGPQANAGEQDGSSGPLVRQAGTSRPSPPTATTRASTATD
SLSATAHLQQRRGVLSKRPREDDDGEPSERKRERDERSKDGRGGNRR

Sequences:

>Translated_447_residues
MPDRAQVIIRIVPGGGTKTLQQIINQLEYLSRKGRLELQRSARHLDIPLPPDQIHELARSWVQETGTYDESQPDEERQQE
LTTHIIVSFPAGTSQVAAYAASREWAAEMFGSGAGGGRYNYLTAFHIDRDHPHLHVVVNRRELLGHGWLKISRRHPQLNY
DALRIKMAEISLRHGIALDASRRAERGITERPITYAQYRRLEREQARQIRFEDADLEQSSPQGDHPEFSQPFDTSPFEAS
AGGPEDMPRPNNRQNESQVHLQEPAGVSNEAGVLVRVALETERLAQPFVSETILADDIGSGSSRVAEGRVESANRTPDIP
RAATEAATHTTHDRQRRAKRPHDDDGGPSGAKRVTLEGIAVGPQANAGEQDGSSGPLVRQAGTSRPSPPTATTRASTATD
SLSATAHLQQRRGVLSKRPREDDDGEPSERKRERDERSKDGRGGNRR
>Mature_446_residues
PDRAQVIIRIVPGGGTKTLQQIINQLEYLSRKGRLELQRSARHLDIPLPPDQIHELARSWVQETGTYDESQPDEERQQEL
TTHIIVSFPAGTSQVAAYAASREWAAEMFGSGAGGGRYNYLTAFHIDRDHPHLHVVVNRRELLGHGWLKISRRHPQLNYD
ALRIKMAEISLRHGIALDASRRAERGITERPITYAQYRRLEREQARQIRFEDADLEQSSPQGDHPEFSQPFDTSPFEASA
GGPEDMPRPNNRQNESQVHLQEPAGVSNEAGVLVRVALETERLAQPFVSETILADDIGSGSSRVAEGRVESANRTPDIPR
AATEAATHTTHDRQRRAKRPHDDDGGPSGAKRVTLEGIAVGPQANAGEQDGSSGPLVRQAGTSRPSPPTATTRASTATDS
LSATAHLQQRRGVLSKRPREDDDGEPSERKRERDERSKDGRGGNRR

Specific function: Tumor formation by A.tumefaciens involves the transfer and integration of a defined segment (T-DNA) of Ti plasmid DNA into the plant nuclear genome. The virD operon encodes a site- specific endonuclease that cleaves at a unique site within both 24 bp dire

COG id: COG3843

COG function: function code U; Type IV secretory pathway, VirD2 components (relaxase)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): VIRD2_AGRT5 (P18592)

Other databases:

- EMBL:   M11311
- EMBL:   J03320
- EMBL:   AE007871
- PIR:   AD3250
- PIR:   B22666
- PIR:   S11839
- RefSeq:   NP_396503.1
- MINT:   MINT-1537255
- STRING:   P18592
- GeneID:   1137505
- GenomeReviews:   AE007871_GR
- KEGG:   atu:Atu6182
- eggNOG:   COG3843
- HOGENOM:   HBG301718
- OMA:   INQLEYL
- ProtClustDB:   PRK13863
- BioCyc:   ATUM176299-1:ATU6182-MONOMER
- GO:   GO:0009405
- InterPro:   IPR005094
- InterPro:   IPR016644
- PIRSF:   PIRSF016095

Pfam domain/function: PF03432 Relaxase

EC number: NA

Molecular weight: Translated: 49548; Mature: 49417

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDRAQVIIRIVPGGGTKTLQQIINQLEYLSRKGRLELQRSARHLDIPLPPDQIHELARS
CCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHH
WVQETGTYDESQPDEERQQELTTHIIVSFPAGTSQVAAYAASREWAAEMFGSGAGGGRYN
HHHHHCCCCCCCCHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEE
YLTAFHIDRDHPHLHVVVNRRELLGHGWLKISRRHPQLNYDALRIKMAEISLRHGIALDA
EEEEEEECCCCCEEEEEEECHHHHCCCCEEEECCCCCCCCHHEEEEHHHHHHHCCCEECC
SRRAERGITERPITYAQYRRLEREQARQIRFEDADLEQSSPQGDHPEFSQPFDTSPFEAS
HHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AGGPEDMPRPNNRQNESQVHLQEPAGVSNEAGVLVRVALETERLAQPFVSETILADDIGS
CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHCCCC
GSSRVAEGRVESANRTPDIPRAATEAATHTTHDRQRRAKRPHDDDGGPSGAKRVTLEGIA
CCCHHHHCCHHCCCCCCCCCHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEE
VGPQANAGEQDGSSGPLVRQAGTSRPSPPTATTRASTATDSLSATAHLQQRRGVLSKRPR
ECCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHCCCC
EDDDGEPSERKRERDERSKDGRGGNRR
CCCCCCCHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
PDRAQVIIRIVPGGGTKTLQQIINQLEYLSRKGRLELQRSARHLDIPLPPDQIHELARS
CCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHH
WVQETGTYDESQPDEERQQELTTHIIVSFPAGTSQVAAYAASREWAAEMFGSGAGGGRYN
HHHHHCCCCCCCCHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEE
YLTAFHIDRDHPHLHVVVNRRELLGHGWLKISRRHPQLNYDALRIKMAEISLRHGIALDA
EEEEEEECCCCCEEEEEEECHHHHCCCCEEEECCCCCCCCHHEEEEHHHHHHHCCCEECC
SRRAERGITERPITYAQYRRLEREQARQIRFEDADLEQSSPQGDHPEFSQPFDTSPFEAS
HHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AGGPEDMPRPNNRQNESQVHLQEPAGVSNEAGVLVRVALETERLAQPFVSETILADDIGS
CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHCCCC
GSSRVAEGRVESANRTPDIPRAATEAATHTTHDRQRRAKRPHDDDGGPSGAKRVTLEGIA
CCCHHHHCCHHCCCCCCCCCHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEE
VGPQANAGEQDGSSGPLVRQAGTSRPSPPTATTRASTATDSLSATAHLQQRRGVLSKRPR
ECCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHCCCC
EDDDGEPSERKRERDERSKDGRGGNRR
CCCCCCCHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2986128; 2194232; 11743193; 11743194