Click here to switch to the map view.

The map label for this gene is virD1 [H]

Identifier: 41223311

GI number: 41223311

Start: 196026

End: 196469

Strand: Direct

Name: virD1 [H]

Synonym: Atu6181

Alternate gene names: 41223311

Gene position: 196026-196469 (Clockwise)

Preceding gene: 16119794

Following gene: 16119798

Centisome position: 91.5

GC content: 54.05

Gene sequence:

>444_bases
ATGTCGCAAGGCAGTAGGCCCACCTCAAGTGACATTGCCGTCAACCAGCGCGAATGCGTGAAGGTTGAAGGCTTCAAGGT
CGTCAGTACCCGATTAAGATCGGCCGAATATGAGAGTTTTTCTCATCAGGCACGCTTGCTGGGCCTCTCCGACAGCATGG
CCATACGGGTTGCGGTGCGCCGCATTGGTGGCTTTCTTGAAATCGACGCAGAGACTCGTCATAGGATGGAGGCCATACTA
CAATCCATAGGAACACTCTCAAGCAACATTGCCGCGCTGCTATCTGCCTATGCCGAAAATCCGACAATGGATTTGGAGGC
TTTGCGAGCTGAACGTATCGCCTTCGGTAAATCTTTCGCTGACCTCGACGGCTTGCTCCGTTCCATTTTGTCCGTATCAC
GGCGGCGGATCGACGGTTGCTCGCTGCTGAAAGACGCCTTGTAG

Upstream 100 bases:

>100_bases
CTTGATTTCGTTTTGTATATGGCTAGATTCCCATCTGCCACGACGAGGAAATGCTACGGCGGGGCAAGTTCAGATCTTTC
CGTCTTCTATGGAGGAAGCT

Downstream 100 bases:

>100_bases
CACTGACGTAGCACTTGGCGGGGAACATATTCGATGCCCGATCGAGCTCAAGTTATCATTCGCATTGTGCCGGGAGGTGG
CACCAAGACCCTTCAACAAA

Product: type IV secretion system T-DNA border endonuclease VirD1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 146

Protein sequence:

>147_residues
MSQGSRPTSSDIAVNQRECVKVEGFKVVSTRLRSAEYESFSHQARLLGLSDSMAIRVAVRRIGGFLEIDAETRHRMEAIL
QSIGTLSSNIAALLSAYAENPTMDLEALRAERIAFGKSFADLDGLLRSILSVSRRRIDGCSLLKDAL

Sequences:

>Translated_147_residues
MSQGSRPTSSDIAVNQRECVKVEGFKVVSTRLRSAEYESFSHQARLLGLSDSMAIRVAVRRIGGFLEIDAETRHRMEAIL
QSIGTLSSNIAALLSAYAENPTMDLEALRAERIAFGKSFADLDGLLRSILSVSRRRIDGCSLLKDAL
>Mature_146_residues
SQGSRPTSSDIAVNQRECVKVEGFKVVSTRLRSAEYESFSHQARLLGLSDSMAIRVAVRRIGGFLEIDAETRHRMEAILQ
SIGTLSSNIAALLSAYAENPTMDLEALRAERIAFGKSFADLDGLLRSILSVSRRRIDGCSLLKDAL

Specific function: Tumor formation by A.tumefaciens involves the transfer and integration of a defined segment (T-DNA) of Ti plasmid DNA into the plant nuclear genome. The virD operon encodes a site- specific endonuclease that cleaves at a unique site within both 24 bp dire

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009933
- ProDom:   PD021660 [H]

Pfam domain/function: PF07328 VirD1 [H]

EC number: NA

Molecular weight: Translated: 16131; Mature: 15999

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQGSRPTSSDIAVNQRECVKVEGFKVVSTRLRSAEYESFSHQARLLGLSDSMAIRVAVR
CCCCCCCCCCCCCCCHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
RIGGFLEIDAETRHRMEAILQSIGTLSSNIAALLSAYAENPTMDLEALRAERIAFGKSFA
HHCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHH
DLDGLLRSILSVSRRRIDGCSLLKDAL
HHHHHHHHHHHHHHHCCCHHHHHHHCC
>Mature Secondary Structure 
SQGSRPTSSDIAVNQRECVKVEGFKVVSTRLRSAEYESFSHQARLLGLSDSMAIRVAVR
CCCCCCCCCCCCCCHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
RIGGFLEIDAETRHRMEAILQSIGTLSSNIAALLSAYAENPTMDLEALRAERIAFGKSFA
HHCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHH
DLDGLLRSILSVSRRRIDGCSLLKDAL
HHHHHHHHHHHHHHHCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3185501 [H]