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The map label for this gene is repA [H]

Identifier: 159161958

GI number: 159161958

Start: 52233

End: 53450

Strand: Direct

Name: repA [H]

Synonym: Atu6043

Alternate gene names: 159161958

Gene position: 52233-53450 (Clockwise)

Preceding gene: 159161955

Following gene: 16119856

Centisome position: 24.38

GC content: 53.86

Gene sequence:

>1218_bases
GTGAGCAAAGCCGCTGCCATATCCCGAAATGATCGCCCGTCGGTAGATGTTACCATTGGTGAGCATGCTGAGCAGCTCAG
CTCTCAGCTTCAAGCGATGAGCGAGGCTTTGTTTCCTCCGACGTCGCACAAGAGCTTGCGCAAATTCACCTCGGGTGAAG
CCGCACGCTTGATGAAAATATCTGACTCAACTCTTCGAAAGATGACACTGGCTGGCGAAGGGCCGCAACCTGAACTCGCC
AGCAACGGACGGCGCTTTTACACCCTCGGTCAGATAAACGAAATCCGGCAGATGCTTGCCGGCTCGACTCGAGGACGTGA
AAGCATTGATTTTGTGCCTCATCGCCGAGGTTCTGAGCATTTGCAAGTCGTTGCTGTAACCAACTTCAAAGGTGGCTCTG
GGAAGACGACGACGTCCGCTCATCTTGCACAGTATCTGGCGTTGCAAGGTTACAGGGTTCTCGCAGTCGATCTCGATCCG
CAGGCTAGTCTTTCAGCACTCCTCGGCGTTCTGCCAGAAACTGATGTCGGTGCAAACGAAACGCTCTATGCGGCTATTCG
GTACGACGACACACGTCGTCCGTTGCGAGATGTGATCCGACCGACGTATTTTGATGGTCTTCACCTTGTTCCTGGAAATC
TCGAGCTTATGGAGTTCGAGCATACCACCCCGAAAGCATTGACTGACAAAGGTACGCGCGACGGATTGTTCTTCACTCGC
GTGGCCCAAGCCTTTGATGAGGTCGCCGACGATTACGATGTCGTGGTCATCGACTGCCCTCCTCAGCTTGGGTTTTTGAC
TCTCAGCGGGTTGTGTGCTGCAACATCAATGGTAATCACCGTACATCCTCAGATGCTGGATATCGCTTCCATGAGCCAGT
TTCTCCTCATGACACGCGACCTTCTGGGTGTCGTGAAAGAGGCGGGGGGCAATCTCCAGTACGATTTCATACGCTATCTC
TTGACGCGCTATGAGCCCCAGGACGCGCCGCAGACGAAAGTGACGGCACTGCTGCGCAACATGTTCGAGGATCACGTCCT
TACAAATCCTATGGTCAAGTCGGCAGCGGTATCTGATGCCGGTTTAACCAAGCAGACGCTCTATGAGATAGGGCGAGAGA
ACCTTACGCGATCGACATACGACCGGGCGATGGAATCTTTAGATGCGGTGAATTCGGAGATCGAGGCTTTGATCAAGATG
GCGTGGGGGCGGGTCTAA

Upstream 100 bases:

>100_bases
CGTTCATTAACCAAAAACGTCTTGCAACCTCACCCGCATTAGGTAATCGTCACGGATAAATGGCAATACGCGCCAATTAA
CCGTGACAAGAGATAACACC

Downstream 100 bases:

>100_bases
TGAAAGGCTTTGCGTTCCTCACAGATCTGTTGGGAGCTCCCAACAGACAGGTGTTGATTCGCCCCCTGGACATGGGGCAC
TGGAGAAGCCGGGGTAATTT

Product: plasmid-partitioning protein RepA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MSKAAAISRNDRPSVDVTIGEHAEQLSSQLQAMSEALFPPTSHKSLRKFTSGEAARLMKISDSTLRKMTLAGEGPQPELA
SNGRRFYTLGQINEIRQMLAGSTRGRESIDFVPHRRGSEHLQVVAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDP
QASLSALLGVLPETDVGANETLYAAIRYDDTRRPLRDVIRPTYFDGLHLVPGNLELMEFEHTTPKALTDKGTRDGLFFTR
VAQAFDEVADDYDVVVIDCPPQLGFLTLSGLCAATSMVITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYL
LTRYEPQDAPQTKVTALLRNMFEDHVLTNPMVKSAAVSDAGLTKQTLYEIGRENLTRSTYDRAMESLDAVNSEIEALIKM
AWGRV

Sequences:

>Translated_405_residues
MSKAAAISRNDRPSVDVTIGEHAEQLSSQLQAMSEALFPPTSHKSLRKFTSGEAARLMKISDSTLRKMTLAGEGPQPELA
SNGRRFYTLGQINEIRQMLAGSTRGRESIDFVPHRRGSEHLQVVAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDP
QASLSALLGVLPETDVGANETLYAAIRYDDTRRPLRDVIRPTYFDGLHLVPGNLELMEFEHTTPKALTDKGTRDGLFFTR
VAQAFDEVADDYDVVVIDCPPQLGFLTLSGLCAATSMVITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYL
LTRYEPQDAPQTKVTALLRNMFEDHVLTNPMVKSAAVSDAGLTKQTLYEIGRENLTRSTYDRAMESLDAVNSEIEALIKM
AWGRV
>Mature_404_residues
SKAAAISRNDRPSVDVTIGEHAEQLSSQLQAMSEALFPPTSHKSLRKFTSGEAARLMKISDSTLRKMTLAGEGPQPELAS
NGRRFYTLGQINEIRQMLAGSTRGRESIDFVPHRRGSEHLQVVAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQ
ASLSALLGVLPETDVGANETLYAAIRYDDTRRPLRDVIRPTYFDGLHLVPGNLELMEFEHTTPKALTDKGTRDGLFFTRV
AQAFDEVADDYDVVVIDCPPQLGFLTLSGLCAATSMVITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLL
TRYEPQDAPQTKVTALLRNMFEDHVLTNPMVKSAAVSDAGLTKQTLYEIGRENLTRSTYDRAMESLDAVNSEIEALIKMA
WGRV

Specific function: This protein is coded by a hairy root Ri plasmid. It is possibly involved in regulating the plasmid copy-number [H]

COG id: COG1192

COG function: function code D; ATPases involved in chromosome partitioning

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002586
- InterPro:   IPR017818 [H]

Pfam domain/function: PF01656 CbiA [H]

EC number: NA

Molecular weight: Translated: 44660; Mature: 44529

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKAAAISRNDRPSVDVTIGEHAEQLSSQLQAMSEALFPPTSHKSLRKFTSGEAARLMKI
CCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHEEEEE
SDSTLRKMTLAGEGPQPELASNGRRFYTLGQINEIRQMLAGSTRGRESIDFVPHRRGSEH
CHHHHHHEEECCCCCCCHHHCCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
LQVVAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQASLSALLGVLPETDVGANE
EEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCC
TLYAAIRYDDTRRPLRDVIRPTYFDGLHLVPGNLELMEFEHTTPKALTDKGTRDGLFFTR
EEEEEEEECCCHHHHHHHHCCHHCCCEEECCCCEEEEEECCCCCCHHCCCCCCCCHHHHH
VAQAFDEVADDYDVVVIDCPPQLGFLTLSGLCAATSMVITVHPQMLDIASMSQFLLMTRD
HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHH
LLGVVKEAGGNLQYDFIRYLLTRYEPQDAPQTKVTALLRNMFEDHVLTNPMVKSAAVSDA
HHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCC
GLTKQTLYEIGRENLTRSTYDRAMESLDAVNSEIEALIKMAWGRV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKAAAISRNDRPSVDVTIGEHAEQLSSQLQAMSEALFPPTSHKSLRKFTSGEAARLMKI
CCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHEEEEE
SDSTLRKMTLAGEGPQPELASNGRRFYTLGQINEIRQMLAGSTRGRESIDFVPHRRGSEH
CHHHHHHEEECCCCCCCHHHCCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
LQVVAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQASLSALLGVLPETDVGANE
EEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCC
TLYAAIRYDDTRRPLRDVIRPTYFDGLHLVPGNLELMEFEHTTPKALTDKGTRDGLFFTR
EEEEEEEECCCHHHHHHHHCCHHCCCEEECCCCEEEEEECCCCCCHHCCCCCCCCHHHHH
VAQAFDEVADDYDVVVIDCPPQLGFLTLSGLCAATSMVITVHPQMLDIASMSQFLLMTRD
HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHH
LLGVVKEAGGNLQYDFIRYLLTRYEPQDAPQTKVTALLRNMFEDHVLTNPMVKSAAVSDA
HHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCC
GLTKQTLYEIGRENLTRSTYDRAMESLDAVNSEIEALIKMAWGRV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA