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The map label for this gene is nocR

Identifier: 159161955

GI number: 159161955

Start: 40362

End: 41210

Strand: Direct

Name: nocR

Synonym: Atu6029

Alternate gene names: 159161955

Gene position: 40362-41210 (Clockwise)

Preceding gene: 16119835

Following gene: 159161958

Centisome position: 18.84

GC content: 55.36

Gene sequence:

>849_bases
ATGACGTCAGCAGCGAATCTGGTGAGGATCACGCAGCCCGCGATCAGCCGGCTGATCAGGGATCTCGAAGAGGAAATTGG
GATCAGCCTCTTCGAAAGAACGGGCAACCGGTTACGTCCTACGCGGGAGGCCGGTATTCTGTTCAAGGAAGTGTCGCGAC
ATTTCAACGGGATTCAGCACATCGACAAAGTCGCGGCTGAACTGAAGAAGTCTCATATGGGGTCCCTAAGGGTCGCCTGT
TATACAGCGCCAGCTCTGAGTTTTATGTCCGGCGTCATTCAGACGTTCATCGCCGATCGGCCCGACGTGTCGGTCTACCT
CGACACAGTTCCTTCCCAGACGGTCCTCGAATTGGTCTCGCTCCAGCACTACGATCTCGGAATATCGATATTGGCTGGCG
ACTATCCTGGTCTCACCACCGAACCTGTCCCTTCCTTTCGTGCGGTCTGCCTGCTGCCGCCGGGGCATCGTCTCGAAGAC
AAGGAAACTGTTCATGCGACGGACCTTGAAGGAGAGTCATTGATTTGCCTCTCTCCAGTGAGCCTTCTACGGATGCAAAC
GGACGCCGCACTGGACAGCTGCGGCGTCCACTGTAATCGCAGGATAGAAAGTAGTCTGGCGCTGAATCTCTGCGATCTGG
TAAGCAGGGGAATGGGGGTTGGTATCGTCGACCCCTTCACTGCCGACTACTACAGTGCAAATCCGGTTATTCAGCGCTCC
TTTGATCCGGTTGTCCCCTACCATTTTGCTATAGTTCTTCCGACCGACAGCCCACCGCCGCGCTTGGTTAGCGAGTTCCG
GGCAGCGTTGCTTGATGCTTTGAAAGCCTTGCCCTATGAAACCATTTGA

Upstream 100 bases:

>100_bases
GGCAGTAATAGGCATGCGCCCATGTGTATTTGTTATGGAGAAAGCAATGATTCAATCGCGTCAGTTAGAAGCGTTCCGGG
CAGTCATGCTGACAGGAGGT

Downstream 100 bases:

>100_bases
TCGTCAGGATCGCAGCAAGTTGTCAAAGATATCGGGTTCAGCCCGGTGTCGTGGTCGAAAGGCTGGCGAACCCGGCTTAT
CCCGTTCTAGAGGCCCCCAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MTSAANLVRITQPAISRLIRDLEEEIGISLFERTGNRLRPTREAGILFKEVSRHFNGIQHIDKVAAELKKSHMGSLRVAC
YTAPALSFMSGVIQTFIADRPDVSVYLDTVPSQTVLELVSLQHYDLGISILAGDYPGLTTEPVPSFRAVCLLPPGHRLED
KETVHATDLEGESLICLSPVSLLRMQTDAALDSCGVHCNRRIESSLALNLCDLVSRGMGVGIVDPFTADYYSANPVIQRS
FDPVVPYHFAIVLPTDSPPPRLVSEFRAALLDALKALPYETI

Sequences:

>Translated_282_residues
MTSAANLVRITQPAISRLIRDLEEEIGISLFERTGNRLRPTREAGILFKEVSRHFNGIQHIDKVAAELKKSHMGSLRVAC
YTAPALSFMSGVIQTFIADRPDVSVYLDTVPSQTVLELVSLQHYDLGISILAGDYPGLTTEPVPSFRAVCLLPPGHRLED
KETVHATDLEGESLICLSPVSLLRMQTDAALDSCGVHCNRRIESSLALNLCDLVSRGMGVGIVDPFTADYYSANPVIQRS
FDPVVPYHFAIVLPTDSPPPRLVSEFRAALLDALKALPYETI
>Mature_281_residues
TSAANLVRITQPAISRLIRDLEEEIGISLFERTGNRLRPTREAGILFKEVSRHFNGIQHIDKVAAELKKSHMGSLRVACY
TAPALSFMSGVIQTFIADRPDVSVYLDTVPSQTVLELVSLQHYDLGISILAGDYPGLTTEPVPSFRAVCLLPPGHRLEDK
ETVHATDLEGESLICLSPVSLLRMQTDAALDSCGVHCNRRIESSLALNLCDLVSRGMGVGIVDPFTADYYSANPVIQRSF
DPVVPYHFAIVLPTDSPPPRLVSEFRAALLDALKALPYETI

Specific function: Positive regulatory protein for the noc operon involved in nopaline catabolism and uptake

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1789204, Length=279, Percent_Identity=34.0501792114695, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI157672245, Length=216, Percent_Identity=25.462962962963, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787530, Length=231, Percent_Identity=25.974025974026, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NOCR_AGRT5 (Q00678)

Other databases:

- EMBL:   M65107
- EMBL:   AE007871
- RefSeq:   NP_396546.3
- ProteinModelPortal:   Q00678
- STRING:   Q00678
- GeneID:   1137352
- GenomeReviews:   AE007871_GR
- KEGG:   atu:Atu6029
- eggNOG:   COG0583
- HOGENOM:   HBG685425
- OMA:   IRHAKGS
- PhylomeDB:   Q00678
- ProtClustDB:   CLSK539851
- BioCyc:   ATUM176299-1:ATU6029-MONOMER
- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00039

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate

EC number: NA

Molecular weight: Translated: 30926; Mature: 30795

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: PS50931 HTH_LYSR; PS01109 RIBOSOMAL_L10

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSAANLVRITQPAISRLIRDLEEEIGISLFERTGNRLRPTREAGILFKEVSRHFNGIQH
CCCCHHHEEECHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
IDKVAAELKKSHMGSLRVACYTAPALSFMSGVIQTFIADRPDVSVYLDTVPSQTVLELVS
HHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHH
LQHYDLGISILAGDYPGLTTEPVPSFRAVCLLPPGHRLEDKETVHATDLEGESLICLSPV
HHHCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCEEEEECHH
SLLRMQTDAALDSCGVHCNRRIESSLALNLCDLVSRGMGVGIVDPFTADYYSANPVIQRS
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCC
FDPVVPYHFAIVLPTDSPPPRLVSEFRAALLDALKALPYETI
CCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TSAANLVRITQPAISRLIRDLEEEIGISLFERTGNRLRPTREAGILFKEVSRHFNGIQH
CCCHHHEEECHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
IDKVAAELKKSHMGSLRVACYTAPALSFMSGVIQTFIADRPDVSVYLDTVPSQTVLELVS
HHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHH
LQHYDLGISILAGDYPGLTTEPVPSFRAVCLLPPGHRLEDKETVHATDLEGESLICLSPV
HHHCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCEEEEECHH
SLLRMQTDAALDSCGVHCNRRIESSLALNLCDLVSRGMGVGIVDPFTADYYSANPVIQRS
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCC
FDPVVPYHFAIVLPTDSPPPRLVSEFRAALLDALKALPYETI
CCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1799698; 11743193; 11743194