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The map label for this gene is ydeS [H]

Identifier: 41410402

GI number: 41410402

Start: 4774033

End: 4774713

Strand: Direct

Name: ydeS [H]

Synonym: MAP4304

Alternate gene names: 41410402

Gene position: 4774033-4774713 (Clockwise)

Preceding gene: 41410398

Following gene: 41410403

Centisome position: 98.85

GC content: 71.51

Gene sequence:

>681_bases
GTGGCAGACTACCGGGGCGGGTCAGGATATGTAAAGCGCGCCCGATCCCCGGCGAGCGGGCGCCGACTGCGGATCCGCAG
AAGCGAGGACCACCAGATGCCAACCGATCCCAACGGGCCCGCCGCGCCGCGAAGACGCAGCGAGAAGTCGCGCACCGCGA
TCGTCACCGCGACCCGGGAACTGCTGCTGGAGCGGGGGTTCGACGGGCTGACCATCGAGGCGGTCGCCGCCCGCGCCGGG
GTGGGCAAGCAGACCATCTACCGCTGGTGGCCCACCCGTCCCGCCCTGGTCGCCGACGTGATGCTGGAAGACGCCGACAG
GCTGCTCGCGTCCGTCGAGCACAGCGGCGATCTGGCCGCCGACCTGGTCGGCTGGGTGGGCAAGCTGGTCACCAGCCTCA
CGACGCCGCGCGGTTCGGCCATGCTGCGCACCCTGACCGTGGCGTGCATGGAGCACGAGGACACCGCGGTCAAACTGCGC
GCCGGGTTCAGCGCGCCGCTGCACGACAGCGTGCGGGCCCGATTGCTGGCCGAGGGCGTGGATGCGGCCACCGCCGAATC
GGCCGCGGACGCCATCGTCGGTGGTGTGGTGTATCCGATTCTGTCCGGCGCGCAACGCTATTCGCGTCGCCGGGCGGAAC
ACACCACCCGGCTCATCGTGGCCGCCCTGACCGCAGGGTGA

Upstream 100 bases:

>100_bases
ACGGCCGCACTGTCACTGGCGATGGCCGCACCGACCGATTCCTCTCGACTCCGCTGGCGGCGACCCGCCGCGCCTTTCGC
AAGACGGACCGTCTCGTCTT

Downstream 100 bases:

>100_bases
CGCCCGGACGGCATTGGCGGCGCGGCGGATTCGCCGATCCGGCGTGCGCCGCAACCGAATGGTCCTAGCATGAGGCGGTG
GTCCACACCCCCGGTTCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MADYRGGSGYVKRARSPASGRRLRIRRSEDHQMPTDPNGPAAPRRRSEKSRTAIVTATRELLLERGFDGLTIEAVAARAG
VGKQTIYRWWPTRPALVADVMLEDADRLLASVEHSGDLAADLVGWVGKLVTSLTTPRGSAMLRTLTVACMEHEDTAVKLR
AGFSAPLHDSVRARLLAEGVDAATAESAADAIVGGVVYPILSGAQRYSRRRAEHTTRLIVAALTAG

Sequences:

>Translated_226_residues
MADYRGGSGYVKRARSPASGRRLRIRRSEDHQMPTDPNGPAAPRRRSEKSRTAIVTATRELLLERGFDGLTIEAVAARAG
VGKQTIYRWWPTRPALVADVMLEDADRLLASVEHSGDLAADLVGWVGKLVTSLTTPRGSAMLRTLTVACMEHEDTAVKLR
AGFSAPLHDSVRARLLAEGVDAATAESAADAIVGGVVYPILSGAQRYSRRRAEHTTRLIVAALTAG
>Mature_225_residues
ADYRGGSGYVKRARSPASGRRLRIRRSEDHQMPTDPNGPAAPRRRSEKSRTAIVTATRELLLERGFDGLTIEAVAARAGV
GKQTIYRWWPTRPALVADVMLEDADRLLASVEHSGDLAADLVGWVGKLVTSLTTPRGSAMLRTLTVACMEHEDTAVKLRA
GFSAPLHDSVRARLLAEGVDAATAESAADAIVGGVVYPILSGAQRYSRRRAEHTTRLIVAALTAG

Specific function: Repressor For The Uidrabc (Gusrabc) Operon. [C]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 24324; Mature: 24193

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADYRGGSGYVKRARSPASGRRLRIRRSEDHQMPTDPNGPAAPRRRSEKSRTAIVTATRE
CCCCCCCCHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
LLLERGFDGLTIEAVAARAGVGKQTIYRWWPTRPALVADVMLEDADRLLASVEHSGDLAA
HHHHCCCCCCCHHHHHHHCCCCHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHH
DLVGWVGKLVTSLTTPRGSAMLRTLTVACMEHEDTAVKLRAGFSAPLHDSVRARLLAEGV
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
DAATAESAADAIVGGVVYPILSGAQRYSRRRAEHTTRLIVAALTAG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCC
>Mature Secondary Structure 
ADYRGGSGYVKRARSPASGRRLRIRRSEDHQMPTDPNGPAAPRRRSEKSRTAIVTATRE
CCCCCCCHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
LLLERGFDGLTIEAVAARAGVGKQTIYRWWPTRPALVADVMLEDADRLLASVEHSGDLAA
HHHHCCCCCCCHHHHHHHCCCCHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHH
DLVGWVGKLVTSLTTPRGSAMLRTLTVACMEHEDTAVKLRAGFSAPLHDSVRARLLAEGV
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
DAATAESAADAIVGGVVYPILSGAQRYSRRRAEHTTRLIVAALTAG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]