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The map label for this gene is cytR [C]

Identifier: 41410398

GI number: 41410398

Start: 4769059

End: 4770063

Strand: Direct

Name: cytR [C]

Synonym: MAP4300

Alternate gene names: 41410398

Gene position: 4769059-4770063 (Clockwise)

Preceding gene: 41410392

Following gene: 41410402

Centisome position: 98.74

GC content: 72.14

Gene sequence:

>1005_bases
ATGACCGGGCCGCAAGGTAACGGAAATTCGAGCAGCAACAAGGCGGCGCGTCCGACCACCGCCGACGTGGCCCGGCTGGC
CGGCGTGTCGACCGCCACCGTCAGTTACGTGCTGAACAACGCGCGGGGCCGCCGCATCTCGCCCGACACCCGCGACGCGG
TGTACCGGGCCGCCAAACTGCTCGGCTACCGGCCCAACCTCGCCGCCCGCAACCTCGCGCGCGGCAAGAGCGGCGTGGTG
CTCTACGTGGTCCCGCACGTGGCCGTGGGCGAGATGCCGATGCAGGCCGGCAGTCGCATGACCACCGCCCTGGCCCGCGA
GGGTCTGCTGCAGGTGCAGGTTTTCGAGACCGACGACGACCAGCACGTGGTCGACGCCATCGCCAACCTGGACCCCGTCG
CGGTCACCAGCCTGTTCCCCCTGAGCGCCGCGGCCCGCCGGGCGGTGACCGAAGCCGGCATCCCGCACATCGAGATCGGC
ACCCTGCCCGCGCTCAACGACCCGCACCTGTCGGTCGGCGAGATGCGGATTGCGCACCTCGTCGAGCGAGGGCATCGACG
AATCGCGTTCGCCTACACCGGGATTGCCCGTTGGCGGCCGCTGGGCGACTACTGGTTCGAAGGCGTATCGCGGGCGGCGC
GGTTGCGCGGCCTGCCGCCGGTGCGCGCCGACGAGGTCACCCTGGACACCGCCGCGTCGGTGGTCAGCGCCTGGGTGCGC
GACGGGGTGACCGCCGTGTGCGCCCAAAGCGACGAGATCGCCTGCCTCGTCCTGTACGGCATCCATCGGGCGGGGCTGCG
CTGCCCGGGCGACCTGGCGGTGATGGGCGTCGACGCCAGCCCGATGGGCATGGTCAGCACGCCGCCGTTGACCACCGTGC
AATTCGATCCCTGCGCGGTGGCCGACGCGGCGCTGGCGGCGGTCTTCGAGCGGCTGGGGCATGCCGCCCCGCCCTCGCCC
GAGCTGACCGACATCGCGCGTCTGGTGGTGCGATCGTCGACCTGA

Upstream 100 bases:

>100_bases
GCGCGCAGGCCCGTCGTCTTTGGGACTATTAGTCTCTATGCTGGCAGGGCGGTCGCGGCCGGCCGCGCCGCGCGGGCGCG
CGGGCATGCCACCATGAGGC

Downstream 100 bases:

>100_bases
AGCTCAGTCCGCGGGCTGGTAGCGCAGCAGCGTGACGTCGTGCTCGGGGTAGTCGCAAAACACCGGCTGCACCCGCATCC
CGACCCGCAGCTGGGCCGGG

Product: hypothetical protein

Products: NA

Alternate protein names: ORF-S1 [H]

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MTGPQGNGNSSSNKAARPTTADVARLAGVSTATVSYVLNNARGRRISPDTRDAVYRAAKLLGYRPNLAARNLARGKSGVV
LYVVPHVAVGEMPMQAGSRMTTALAREGLLQVQVFETDDDQHVVDAIANLDPVAVTSLFPLSAAARRAVTEAGIPHIEIG
TLPALNDPHLSVGEMRIAHLVERGHRRIAFAYTGIARWRPLGDYWFEGVSRAARLRGLPPVRADEVTLDTAASVVSAWVR
DGVTAVCAQSDEIACLVLYGIHRAGLRCPGDLAVMGVDASPMGMVSTPPLTTVQFDPCAVADAALAAVFERLGHAAPPSP
ELTDIARLVVRSST

Sequences:

>Translated_334_residues
MTGPQGNGNSSSNKAARPTTADVARLAGVSTATVSYVLNNARGRRISPDTRDAVYRAAKLLGYRPNLAARNLARGKSGVV
LYVVPHVAVGEMPMQAGSRMTTALAREGLLQVQVFETDDDQHVVDAIANLDPVAVTSLFPLSAAARRAVTEAGIPHIEIG
TLPALNDPHLSVGEMRIAHLVERGHRRIAFAYTGIARWRPLGDYWFEGVSRAARLRGLPPVRADEVTLDTAASVVSAWVR
DGVTAVCAQSDEIACLVLYGIHRAGLRCPGDLAVMGVDASPMGMVSTPPLTTVQFDPCAVADAALAAVFERLGHAAPPSP
ELTDIARLVVRSST
>Mature_333_residues
TGPQGNGNSSSNKAARPTTADVARLAGVSTATVSYVLNNARGRRISPDTRDAVYRAAKLLGYRPNLAARNLARGKSGVVL
YVVPHVAVGEMPMQAGSRMTTALAREGLLQVQVFETDDDQHVVDAIANLDPVAVTSLFPLSAAARRAVTEAGIPHIEIGT
LPALNDPHLSVGEMRIAHLVERGHRRIAFAYTGIARWRPLGDYWFEGVSRAARLRGLPPVRADEVTLDTAASVVSAWVRD
GVTAVCAQSDEIACLVLYGIHRAGLRCPGDLAVMGVDASPMGMVSTPPLTTVQFDPCAVADAALAAVFERLGHAAPPSPE
LTDIARLVVRSST

Specific function: Putative sugar-binding regulatory protein for the alpha- amylase gene [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790369, Length=337, Percent_Identity=26.1127596439169, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1789068, Length=299, Percent_Identity=24.4147157190635, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 35309; Mature: 35178

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGPQGNGNSSSNKAARPTTADVARLAGVSTATVSYVLNNARGRRISPDTRDAVYRAAKL
CCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
LGYRPNLAARNLARGKSGVVLYVVPHVAVGEMPMQAGSRMTTALAREGLLQVQVFETDDD
HCCCCCHHHHHHHCCCCCEEEEEECCCEECCCCHHCCCHHHHHHHHCCCEEEEEEECCCC
QHVVDAIANLDPVAVTSLFPLSAAARRAVTEAGIPHIEIGTLPALNDPHLSVGEMRIAHL
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHH
VERGHRRIAFAYTGIARWRPLGDYWFEGVSRAARLRGLPPVRADEVTLDTAASVVSAWVR
HHHCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHH
DGVTAVCAQSDEIACLVLYGIHRAGLRCPGDLAVMGVDASPMGMVSTPPLTTVQFDPCAV
CCCEEEECCCCCEEEEEEEHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCHHH
ADAALAAVFERLGHAAPPSPELTDIARLVVRSST
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
TGPQGNGNSSSNKAARPTTADVARLAGVSTATVSYVLNNARGRRISPDTRDAVYRAAKL
CCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
LGYRPNLAARNLARGKSGVVLYVVPHVAVGEMPMQAGSRMTTALAREGLLQVQVFETDDD
HCCCCCHHHHHHHCCCCCEEEEEECCCEECCCCHHCCCHHHHHHHHCCCEEEEEEECCCC
QHVVDAIANLDPVAVTSLFPLSAAARRAVTEAGIPHIEIGTLPALNDPHLSVGEMRIAHL
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHH
VERGHRRIAFAYTGIARWRPLGDYWFEGVSRAARLRGLPPVRADEVTLDTAASVVSAWVR
HHHCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHH
DGVTAVCAQSDEIACLVLYGIHRAGLRCPGDLAVMGVDASPMGMVSTPPLTTVQFDPCAV
CCCEEEECCCCCEEEEEEEHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCHHH
ADAALAAVFERLGHAAPPSPELTDIARLVVRSST
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3500166 [H]