| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
Click here to switch to the map view.
The map label for this gene is 41410399
Identifier: 41410399
GI number: 41410399
Start: 4770067
End: 4770480
Strand: Reverse
Name: 41410399
Synonym: MAP4301c
Alternate gene names: NA
Gene position: 4770480-4770067 (Counterclockwise)
Preceding gene: 41410400
Following gene: 41410397
Centisome position: 98.77
GC content: 67.87
Gene sequence:
>414_bases ATGACCACCTTCGAGCGGCCGATGCCCGTCAAAACGCCCACCACCGCGCCGTTTTGGGATGCGCTGGCGCAGCATCGGAT CGTCATCCAGTACTCGCCGTCGCTGCAGTCCTACGTGTTCTACCCGCGGGTGCGCGCGCCCCGCACCCTGGCCGACGACC TGGAATGGCGGGAGATCTCCGGGATGGGGTCGCTGTACTCCTACACGGTGGCCCACCGGCCGGTCAGCCCGCACTTCGCC GACGCGGTGCCGCAGCTGCTGGCCATCGTCGAATGGGACGAGGGCCCAAGGTTTTCCACCGAAATGGTGAACGTCGACCC GGCCCAGCTGCGGGTCGGGATGCGGGTGCAGCCGGTGTTTTGCGACTACCCCGAGCACGACGTCACGCTGCTGCGCTACC AGCCCGCGGACTGA
Upstream 100 bases:
>100_bases GCGCGGCGCAGGTCCCCGACTGCAACCGGGCCTTCGTGTCCGGCAACGGGGGGATCCTGTCCGAGCAGACCACACTCATC CTCGAGGGAGACTGATCGCA
Downstream 100 bases:
>100_bases GCTTCAGGTCGACGATCGCACCACCAGACGCGCGATGTCGGTCAGCTCGGGCGAGGGCGGGGCGGCATGCCCCAGCCGCT CGAAGACCGCCGCCAGCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 137; Mature: 136
Protein sequence:
>137_residues MTTFERPMPVKTPTTAPFWDALAQHRIVIQYSPSLQSYVFYPRVRAPRTLADDLEWREISGMGSLYSYTVAHRPVSPHFA DAVPQLLAIVEWDEGPRFSTEMVNVDPAQLRVGMRVQPVFCDYPEHDVTLLRYQPAD
Sequences:
>Translated_137_residues MTTFERPMPVKTPTTAPFWDALAQHRIVIQYSPSLQSYVFYPRVRAPRTLADDLEWREISGMGSLYSYTVAHRPVSPHFA DAVPQLLAIVEWDEGPRFSTEMVNVDPAQLRVGMRVQPVFCDYPEHDVTLLRYQPAD >Mature_136_residues TTFERPMPVKTPTTAPFWDALAQHRIVIQYSPSLQSYVFYPRVRAPRTLADDLEWREISGMGSLYSYTVAHRPVSPHFAD AVPQLLAIVEWDEGPRFSTEMVNVDPAQLRVGMRVQPVFCDYPEHDVTLLRYQPAD
Specific function: Unknown
COG id: COG1545
COG function: function code R; Predicted nucleic-acid-binding protein containing a Zn-ribbon
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15752; Mature: 15621
Theoretical pI: Translated: 5.57; Mature: 5.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTFERPMPVKTPTTAPFWDALAQHRIVIQYSPSLQSYVFYPRVRAPRTLADDLEWREIS CCCCCCCCCCCCCCCCHHHHHHHCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCEEECC GMGSLYSYTVAHRPVSPHFADAVPQLLAIVEWDEGPRFSTEMVNVDPAQLRVGMRVQPVF CCCCCEEEEEECCCCCCHHHHHHHHHHEEEECCCCCCCCEEEECCCHHHEEECCEEEEEE CDYPEHDVTLLRYQPAD CCCCCCCEEEEEEECCC >Mature Secondary Structure TTFERPMPVKTPTTAPFWDALAQHRIVIQYSPSLQSYVFYPRVRAPRTLADDLEWREIS CCCCCCCCCCCCCCCHHHHHHHCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCEEECC GMGSLYSYTVAHRPVSPHFADAVPQLLAIVEWDEGPRFSTEMVNVDPAQLRVGMRVQPVF CCCCCEEEEEECCCCCCHHHHHHHHHHEEEECCCCCCCCEEEECCCHHHEEECCEEEEEE CDYPEHDVTLLRYQPAD CCCCCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA