| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is 41410397
Identifier: 41410397
GI number: 41410397
Start: 4767444
End: 4768799
Strand: Reverse
Name: 41410397
Synonym: MAP4299c
Alternate gene names: NA
Gene position: 4768799-4767444 (Counterclockwise)
Preceding gene: 41410399
Following gene: 41410396
Centisome position: 98.74
GC content: 66.0
Gene sequence:
>1356_bases ATGAACAAGGACGATCTGATCCTGATCAGCGTGGACGACCACATCGCCGAGCCGGCCGACATGTTCGACGCCCACGTCCC CGCCAAGTACAAGGACCGCGCGCCGCGGGTGGTCGTCGAGCCCGACGGCATCCAGCAGTGGTACTACGGCGACATCCACG GACGCAACATGGGCCTGAACGCCGTGGCGGGCAAGCCGCGCGAGATGTACAACATCGACGCCAGCCGCTACGACGAGATG CGGCCGGGCTGCTTCAACGTCGACGAGCGGGTCCGCGACATGAACGCCGGCGGCCAGCTGGCGGGCCTGAACTTCCCCAA CTTCACCGGGTTCTCCGGCCAGGTGCTCAACCAGGCCCCGGACCGCGAGGTCAACCTGGTGATGATCAAGGCCTACAACG ACTGGCACATCGACGAGTGGTGTGCCGCGTACCCGGGCCGGTTCATCCCGTGCGGCATCCTGCCGCTGTTCGACGTGGCC GAGGCCGCCAAGGAGGTCAACCGCTTGGCCGCCAAGGGATGTCACGCGGTGACGTTCTCGGAGAACCCGGAAGCGTTGCA GATGCCCAGCATTCACACCCGGTATTGGTACCCGTTGTTCGAGGCGGTCTGCGAGAACAAGACGGTGCTGTGCACCCACG TGGGCTCGGCGTCGCGGTCCCCGCAGGTGTCGACCGACGCCCCGCCCAGCGTGCAGATGACCGCCTCGTCGATGATGAGC ATGTTCACCTTCACCGAGCTGATCTGGGCGCAGTTCTGGGCGGACTTCCCGGAGCTGAAATTCTCCCTCACCGAGGGCGA CGTCGGCTGGATACCGTACTTCCTGTGGCGGGCCGAGCACGTCTACAACCGCCATTCGGGCTGGACGCTGGCCACCTTCC CGCCCGGCTACAGCGGCCCCACCGACGTGTTCAAACGACACTTCTACACCTGCTTCATCAGCGACAAAGTCGGTGTGCGC AACATGGATTGGTTCAACGAGGACATGCTGTGCTGGGAGTCCGACTTCCCGCACTCCGACAGCAACTGGCCGTTCGCGCC GGAGGACGTCATCGACACCATGGGCCACCTCGACGACGCGGTGATCAACAAGATCACCCACGAAAACGCCATGGCCGCCT ACTCATTCGACCCGTTTCGGCACATCCCGAAGGAGCAGGCCCGGGCCGGTCACCTGCGCGCCCAGGCGACCGACGTCGAC GTGGTCACCCACGTCGGGCACCGGGCCAGCCAGCGCGACCGCGACGCGTGGGCGAGGATGACGCAATTCGCCCTGCAGGC CCAGGCGTCAGCCCAGGCGCCGGTGACGGTCGAGGCAGCCGGGATCGCCGGCCGCGCCACCACATTGGGCAACTGA
Upstream 100 bases:
>100_bases ATACGGCGGCGAGTTGGGAGGCGTGACGCGACGGCCGCCGTTGACACTGCGAGCGGCACCATTGTCTACTAGTCACTAGT CGGTGACCGAGGAGCACGGC
Downstream 100 bases:
>100_bases GCGTGGGCCCGGCGCCGTTCGCGCACTGGCGCGTGCTGGAGTTCAGCAACGGCCTGGCGGTCTCCTACTGCGGCAAGATG TTCGCCGACGCCGGCGCCGA
Product: hypothetical protein
Products: NA
Alternate protein names: Amidase; Hydrolase; Aminocarboxymuconate-Semialdehyde Decarboxylase; TIM-Barrel Fold Metal-Dependent Hydrolase; Minocarboxymuconate-Semialdehyde Decarboxylase.; Metal-Dependent Amidohydrolase; Amidohydrolase 2 Protein
Number of amino acids: Translated: 451; Mature: 451
Protein sequence:
>451_residues MNKDDLILISVDDHIAEPADMFDAHVPAKYKDRAPRVVVEPDGIQQWYYGDIHGRNMGLNAVAGKPREMYNIDASRYDEM RPGCFNVDERVRDMNAGGQLAGLNFPNFTGFSGQVLNQAPDREVNLVMIKAYNDWHIDEWCAAYPGRFIPCGILPLFDVA EAAKEVNRLAAKGCHAVTFSENPEALQMPSIHTRYWYPLFEAVCENKTVLCTHVGSASRSPQVSTDAPPSVQMTASSMMS MFTFTELIWAQFWADFPELKFSLTEGDVGWIPYFLWRAEHVYNRHSGWTLATFPPGYSGPTDVFKRHFYTCFISDKVGVR NMDWFNEDMLCWESDFPHSDSNWPFAPEDVIDTMGHLDDAVINKITHENAMAAYSFDPFRHIPKEQARAGHLRAQATDVD VVTHVGHRASQRDRDAWARMTQFALQAQASAQAPVTVEAAGIAGRATTLGN
Sequences:
>Translated_451_residues MNKDDLILISVDDHIAEPADMFDAHVPAKYKDRAPRVVVEPDGIQQWYYGDIHGRNMGLNAVAGKPREMYNIDASRYDEM RPGCFNVDERVRDMNAGGQLAGLNFPNFTGFSGQVLNQAPDREVNLVMIKAYNDWHIDEWCAAYPGRFIPCGILPLFDVA EAAKEVNRLAAKGCHAVTFSENPEALQMPSIHTRYWYPLFEAVCENKTVLCTHVGSASRSPQVSTDAPPSVQMTASSMMS MFTFTELIWAQFWADFPELKFSLTEGDVGWIPYFLWRAEHVYNRHSGWTLATFPPGYSGPTDVFKRHFYTCFISDKVGVR NMDWFNEDMLCWESDFPHSDSNWPFAPEDVIDTMGHLDDAVINKITHENAMAAYSFDPFRHIPKEQARAGHLRAQATDVD VVTHVGHRASQRDRDAWARMTQFALQAQASAQAPVTVEAAGIAGRATTLGN >Mature_451_residues MNKDDLILISVDDHIAEPADMFDAHVPAKYKDRAPRVVVEPDGIQQWYYGDIHGRNMGLNAVAGKPREMYNIDASRYDEM RPGCFNVDERVRDMNAGGQLAGLNFPNFTGFSGQVLNQAPDREVNLVMIKAYNDWHIDEWCAAYPGRFIPCGILPLFDVA EAAKEVNRLAAKGCHAVTFSENPEALQMPSIHTRYWYPLFEAVCENKTVLCTHVGSASRSPQVSTDAPPSVQMTASSMMS MFTFTELIWAQFWADFPELKFSLTEGDVGWIPYFLWRAEHVYNRHSGWTLATFPPGYSGPTDVFKRHFYTCFISDKVGVR NMDWFNEDMLCWESDFPHSDSNWPFAPEDVIDTMGHLDDAVINKITHENAMAAYSFDPFRHIPKEQARAGHLRAQATDVD VVTHVGHRASQRDRDAWARMTQFALQAQASAQAPVTVEAAGIAGRATTLGN
Specific function: Unknown
COG id: COG2159
COG function: function code R; Predicted metal-dependent hydrolase of the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50770; Mature: 50770
Theoretical pI: Translated: 5.15; Mature: 5.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKDDLILISVDDHIAEPADMFDAHVPAKYKDRAPRVVVEPDGIQQWYYGDIHGRNMGLN CCCCCEEEEEECHHHCCCHHHHHCCCCCCHHCCCCEEEECCCCCCEEEECCCCCCCCCCC AVAGKPREMYNIDASRYDEMRPGCFNVDERVRDMNAGGQLAGLNFPNFTGFSGQVLNQAP CCCCCCHHHEECCHHHHHHCCCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCHHHCCCC DREVNLVMIKAYNDWHIDEWCAAYPGRFIPCGILPLFDVAEAAKEVNRLAAKGCHAVTFS CCCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEC ENPEALQMPSIHTRYWYPLFEAVCENKTVLCTHVGSASRSPQVSTDAPPSVQMTASSMMS CCCCCEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEHHHHHHHH MFTFTELIWAQFWADFPELKFSLTEGDVGWIPYFLWRAEHVYNRHSGWTLATFPPGYSGP HHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCH TDVFKRHFYTCFISDKVGVRNMDWFNEDMLCWESDFPHSDSNWPFAPEDVIDTMGHLDDA HHHHHHCEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH VINKITHENAMAAYSFDPFRHIPKEQARAGHLRAQATDVDVVTHVGHRASQRDRDAWARM HHHHHHHCCCEEEECCCHHHHCCHHHHHHCCCEECCCCHHHHHHHCCCCCHHHHHHHHHH TQFALQAQASAQAPVTVEAAGIAGRATTLGN HHHHHHHHCCCCCCEEEEECCCCCCCCCCCC >Mature Secondary Structure MNKDDLILISVDDHIAEPADMFDAHVPAKYKDRAPRVVVEPDGIQQWYYGDIHGRNMGLN CCCCCEEEEEECHHHCCCHHHHHCCCCCCHHCCCCEEEECCCCCCEEEECCCCCCCCCCC AVAGKPREMYNIDASRYDEMRPGCFNVDERVRDMNAGGQLAGLNFPNFTGFSGQVLNQAP CCCCCCHHHEECCHHHHHHCCCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCHHHCCCC DREVNLVMIKAYNDWHIDEWCAAYPGRFIPCGILPLFDVAEAAKEVNRLAAKGCHAVTFS CCCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEC ENPEALQMPSIHTRYWYPLFEAVCENKTVLCTHVGSASRSPQVSTDAPPSVQMTASSMMS CCCCCEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEHHHHHHHH MFTFTELIWAQFWADFPELKFSLTEGDVGWIPYFLWRAEHVYNRHSGWTLATFPPGYSGP HHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCH TDVFKRHFYTCFISDKVGVRNMDWFNEDMLCWESDFPHSDSNWPFAPEDVIDTMGHLDDA HHHHHHCEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH VINKITHENAMAAYSFDPFRHIPKEQARAGHLRAQATDVDVVTHVGHRASQRDRDAWARM HHHHHHHCCCEEEECCCHHHHCCHHHHHHCCCEECCCCHHHHHHHCCCCCHHHHHHHHHH TQFALQAQASAQAPVTVEAAGIAGRATTLGN HHHHHHHHCCCCCCEEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA