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The map label for this gene is 41409099

Identifier: 41409099

GI number: 41409099

Start: 3338702

End: 3339946

Strand: Direct

Name: 41409099

Synonym: MAP3001

Alternate gene names: NA

Gene position: 3338702-3339946 (Clockwise)

Preceding gene: 41409097

Following gene: 41409105

Centisome position: 69.13

GC content: 70.6

Gene sequence:

>1245_bases
ATGTCCTCGAGCGTGCTGGCAGCTGAGGTGGAGGTGCGTCCTTGCGATCGGTTGGCGGTGCTGTTTGACGAGTTGGCGGA
GTTGACCGGGCAGCGTAATGCGATTGATGGGCGCATCGTGGAGATCGTCGCGCAGATCGAGCGCGAGCAGCTGTGGGGAG
CCACCGGGGCGCGGTCTCTTGGCGCGCTGGTGGCCTGGAAGACGGGCTGCTCACCGGGCAATGCCGAGACGATCGCGGCC
GTGGCGCGCCGGTTGGACTCGTTTCCCCGCTGCGCGGCCGGTCTGCGGGAGGGCCGGTTGTCGCTGGACCAGCTCGGGGT
CATCGCGCAGCGTGCCGGGGCGGGATCCGATGCGCATTACGCGCAGCTGGCCACGGTGGCCACGGTCAACCAGCTGCGCA
CCGCGGTCAAGCTGGAACCGCGGCCCCAACCCGAGGCCAAGCCGGCACCGCAGCCCGGCCTCACCAAGACCTCCGACGAG
GAGCTCAGCTGCTGGCGGATCAAGCTCGACCGCCTCGATGCGGCCACATTCGACGCCGCCCTGGCCGCGCACCGCGAAGC
GCTGATCTCCGAATGGAAACGCGACCACAACCACCGGGCCGGCGAGTCGGTGCCGCCGTTGCCGGGCACGCTGGAGGCGT
TTATCCGCCTGATCGAAACCGGCTGGGACGCCGAGGCGCACCGCCGCCCCCACGGCCACCACACCACCGTGGTGGTCCAC
CTCGACGCCGCCCAACGCATCGCCGGCCTGCATTTGGGCCCGCTGCTGTCCGACGCCGAGCGCCGCTATCTGACCTGTGA
TGCTACCTGCGAGGTGTGGGTCGAACGCGACGGCCAACCCATCGGTGCGGGCCGCTCGACCCGGGTGATCAACCGGCGGC
TACGCCGCGCCCTCGAACACCGCCACCGCGGCTGCGCGATCCCCGGCTGTGGCGCCACCCGCGGCCTGCACGCCCACCAC
CTGCGGCACTGGGAAGACGGCGGCCCCACCGAACTGTCCAACCTGGTCCTGGTCTGCCCCTATCACCACCGCGCCCACCA
CCGCGGCGAGATCACCATCACCGGCCCCGCCGACACCCTCCTCGTCACCGACAGCTCCGGGCGCCACCTGAAACCAGGAT
CACTGGCCCGCAAACCGACCAGACCCCCACCCGCCGTCCCACCGTGCCCCGGACCCCTCGGCCAACGCGCCGACTGGTGG
TGGTACGACCCCTTCCAACCCCAACCACCGCCAACAACGAATTAG

Upstream 100 bases:

>100_bases
TAACGGTTTCGATGTTGGATGGCGAGCTTTCGCGGGGCGGTCGGGCACCGCCGCGGTTTGACGGCCGAAACTTGTCGGAC
CCCGTTGTCATGATGTTGTC

Downstream 100 bases:

>100_bases
GCGCGTAGCGCCTCACTAAATCCCTTGTGGGCCAATGCTTTACGTGTCGACCGAGCCGATTCAGGAACGCCCGGAAAGCT
TTTCGCGCAAGCGGCGGTTG

Product: hypothetical protein

Products: NA

Alternate protein names: HNH Endonuclease; HNH Endonuclease Domain-Containing Protein; HNH Nuclease

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MSSSVLAAEVEVRPCDRLAVLFDELAELTGQRNAIDGRIVEIVAQIEREQLWGATGARSLGALVAWKTGCSPGNAETIAA
VARRLDSFPRCAAGLREGRLSLDQLGVIAQRAGAGSDAHYAQLATVATVNQLRTAVKLEPRPQPEAKPAPQPGLTKTSDE
ELSCWRIKLDRLDAATFDAALAAHREALISEWKRDHNHRAGESVPPLPGTLEAFIRLIETGWDAEAHRRPHGHHTTVVVH
LDAAQRIAGLHLGPLLSDAERRYLTCDATCEVWVERDGQPIGAGRSTRVINRRLRRALEHRHRGCAIPGCGATRGLHAHH
LRHWEDGGPTELSNLVLVCPYHHRAHHRGEITITGPADTLLVTDSSGRHLKPGSLARKPTRPPPAVPPCPGPLGQRADWW
WYDPFQPQPPPTTN

Sequences:

>Translated_414_residues
MSSSVLAAEVEVRPCDRLAVLFDELAELTGQRNAIDGRIVEIVAQIEREQLWGATGARSLGALVAWKTGCSPGNAETIAA
VARRLDSFPRCAAGLREGRLSLDQLGVIAQRAGAGSDAHYAQLATVATVNQLRTAVKLEPRPQPEAKPAPQPGLTKTSDE
ELSCWRIKLDRLDAATFDAALAAHREALISEWKRDHNHRAGESVPPLPGTLEAFIRLIETGWDAEAHRRPHGHHTTVVVH
LDAAQRIAGLHLGPLLSDAERRYLTCDATCEVWVERDGQPIGAGRSTRVINRRLRRALEHRHRGCAIPGCGATRGLHAHH
LRHWEDGGPTELSNLVLVCPYHHRAHHRGEITITGPADTLLVTDSSGRHLKPGSLARKPTRPPPAVPPCPGPLGQRADWW
WYDPFQPQPPPTTN
>Mature_413_residues
SSSVLAAEVEVRPCDRLAVLFDELAELTGQRNAIDGRIVEIVAQIEREQLWGATGARSLGALVAWKTGCSPGNAETIAAV
ARRLDSFPRCAAGLREGRLSLDQLGVIAQRAGAGSDAHYAQLATVATVNQLRTAVKLEPRPQPEAKPAPQPGLTKTSDEE
LSCWRIKLDRLDAATFDAALAAHREALISEWKRDHNHRAGESVPPLPGTLEAFIRLIETGWDAEAHRRPHGHHTTVVVHL
DAAQRIAGLHLGPLLSDAERRYLTCDATCEVWVERDGQPIGAGRSTRVINRRLRRALEHRHRGCAIPGCGATRGLHAHHL
RHWEDGGPTELSNLVLVCPYHHRAHHRGEITITGPADTLLVTDSSGRHLKPGSLARKPTRPPPAVPPCPGPLGQRADWWW
YDPFQPQPPPTTN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45257; Mature: 45126

Theoretical pI: Translated: 8.16; Mature: 8.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSVLAAEVEVRPCDRLAVLFDELAELTGQRNAIDGRIVEIVAQIEREQLWGATGARSL
CCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHH
GALVAWKTGCSPGNAETIAAVARRLDSFPRCAAGLREGRLSLDQLGVIAQRAGAGSDAHY
HHHEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHH
AQLATVATVNQLRTAVKLEPRPQPEAKPAPQPGLTKTSDEELSCWRIKLDRLDAATFDAA
HHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHCHHHHHHH
LAAHREALISEWKRDHNHRAGESVPPLPGTLEAFIRLIETGWDAEAHRRPHGHHTTVVVH
HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCCCCCCEEEEEE
LDAAQRIAGLHLGPLLSDAERRYLTCDATCEVWVERDGQPIGAGRSTRVINRRLRRALEH
ECHHHHHHHCHHHHHHHCCCCCEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
RHRGCAIPGCGATRGLHAHHLRHWEDGGPTELSNLVLVCPYHHRAHHRGEITITGPADTL
HHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEECCCHHHHCCCCCEEEECCCCEE
LVTDSSGRHLKPGSLARKPTRPPPAVPPCPGPLGQRADWWWYDPFQPQPPPTTN
EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
>Mature Secondary Structure 
SSSVLAAEVEVRPCDRLAVLFDELAELTGQRNAIDGRIVEIVAQIEREQLWGATGARSL
CCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHH
GALVAWKTGCSPGNAETIAAVARRLDSFPRCAAGLREGRLSLDQLGVIAQRAGAGSDAHY
HHHEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHH
AQLATVATVNQLRTAVKLEPRPQPEAKPAPQPGLTKTSDEELSCWRIKLDRLDAATFDAA
HHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHCHHHHHHH
LAAHREALISEWKRDHNHRAGESVPPLPGTLEAFIRLIETGWDAEAHRRPHGHHTTVVVH
HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCCCCCCEEEEEE
LDAAQRIAGLHLGPLLSDAERRYLTCDATCEVWVERDGQPIGAGRSTRVINRRLRRALEH
ECHHHHHHHCHHHHHHHCCCCCEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
RHRGCAIPGCGATRGLHAHHLRHWEDGGPTELSNLVLVCPYHHRAHHRGEITITGPADTL
HHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEECCCHHHHCCCCCEEEECCCCEE
LVTDSSGRHLKPGSLARKPTRPPPAVPPCPGPLGQRADWWWYDPFQPQPPPTTN
EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA