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The map label for this gene is ykvO [H]

Identifier: 41408491

GI number: 41408491

Start: 2689117

End: 2689914

Strand: Reverse

Name: ykvO [H]

Synonym: MAP2393c

Alternate gene names: 41408491

Gene position: 2689914-2689117 (Counterclockwise)

Preceding gene: 41408493

Following gene: 41408490

Centisome position: 55.69

GC content: 70.05

Gene sequence:

>798_bases
ATGGATCTAGGGCTGGCCAATGCCGCCGCGGTGGTGGTCGGCGGCAGCCGCGGGATGGGGTTGGCGACGGCGCGCTGCCT
GGCCGATGAGGGCGCGCGGGTCGCGGTGATCGGCCGCAGCCGCGACGCCCTCGACTCGGCGGTGACCGATCTCACCCGAC
GCGGCAGCCCGGACGCGCTCGGGCTGGTCGCCGACATCGGCGACGACGCCGCGGTGGGCCAGGCGTTCGGCGAGCTCGCG
CGGCGCTGGGACGGCGAACTCAATGCTCTGGTGATCACGGTGGGGCCGGGCGCGGCCGGCACGTTCGAGGACCTGACCGA
CGAGCAGTGGCGCCAGGCCGTCGAGGACGGGGTGCTGGGCATGGTGCGCTGTGTCCGTGCGGCACTTCCGCTGCTGCGCA
AGGCGCAATGGGCGCGGATCGTCACCTTCTCGGCGCATTCGACGCAGCGTCAAAGCGTGCTGCTGCCCGCCTACACCGCG
GCCAAATCGATGCTGACGAGTGTTTCCAAGAACCTGTCCCTGCTGCTGGCCAAGGACGAGATCCTGGTCAACGTGATCTC
CCCGGGCAGCATCGCGTCGGAATCGCTGGTGGGCTGGGCGAATTCGGTGGGCGTCGACGGGCGCGACCCCTACGCCCTGA
TGGAGGCGATCGGCAAGCATTTCGGTCATCCCGCGCACATGCCGCGCGCCGGTCTGCCGGAGGAGATCGGACCGGTCGCG
GCGTTCCTGGCCTCACGACGCAACTCCTACATGACGGGCGCCAACATCAACGTCGACGGCGGTTCGGACTTCACCTGA

Upstream 100 bases:

>100_bases
GTATACGCTTACGTGTCGCAATTTCCCTCTGCTACTGTAATACCTATCGTAGGCTTTTTGGTAAATCGGCTGGACAGGCG
AAAATGACCAGGCTAGAGCA

Downstream 100 bases:

>100_bases
ACCGGCGGTGAAAGAAAACGATTGGCAGACAAAAGGAGTCGACTGTGGCTACGGCAGCAGACGCGCGCGCCTGGGCGCGC
GGCGCATTGCGGGGGATCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MDLGLANAAAVVVGGSRGMGLATARCLADEGARVAVIGRSRDALDSAVTDLTRRGSPDALGLVADIGDDAAVGQAFGELA
RRWDGELNALVITVGPGAAGTFEDLTDEQWRQAVEDGVLGMVRCVRAALPLLRKAQWARIVTFSAHSTQRQSVLLPAYTA
AKSMLTSVSKNLSLLLAKDEILVNVISPGSIASESLVGWANSVGVDGRDPYALMEAIGKHFGHPAHMPRAGLPEEIGPVA
AFLASRRNSYMTGANINVDGGSDFT

Sequences:

>Translated_265_residues
MDLGLANAAAVVVGGSRGMGLATARCLADEGARVAVIGRSRDALDSAVTDLTRRGSPDALGLVADIGDDAAVGQAFGELA
RRWDGELNALVITVGPGAAGTFEDLTDEQWRQAVEDGVLGMVRCVRAALPLLRKAQWARIVTFSAHSTQRQSVLLPAYTA
AKSMLTSVSKNLSLLLAKDEILVNVISPGSIASESLVGWANSVGVDGRDPYALMEAIGKHFGHPAHMPRAGLPEEIGPVA
AFLASRRNSYMTGANINVDGGSDFT
>Mature_265_residues
MDLGLANAAAVVVGGSRGMGLATARCLADEGARVAVIGRSRDALDSAVTDLTRRGSPDALGLVADIGDDAAVGQAFGELA
RRWDGELNALVITVGPGAAGTFEDLTDEQWRQAVEDGVLGMVRCVRAALPLLRKAQWARIVTFSAHSTQRQSVLLPAYTA
AKSMLTSVSKNLSLLLAKDEILVNVISPGSIASESLVGWANSVGVDGRDPYALMEAIGKHFGHPAHMPRAGLPEEIGPVA
AFLASRRNSYMTGANINVDGGSDFT

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=260, Percent_Identity=28.0769230769231, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI5031737, Length=259, Percent_Identity=27.7992277992278, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI40254992, Length=250, Percent_Identity=27.6, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI19923817, Length=260, Percent_Identity=26.5384615384615, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI59889578, Length=243, Percent_Identity=28.8065843621399, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI20149619, Length=216, Percent_Identity=27.3148148148148, Blast_Score=65, Evalue=9e-11,
Organism=Escherichia coli, GI87082100, Length=264, Percent_Identity=29.5454545454545, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789378, Length=264, Percent_Identity=29.9242424242424, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787335, Length=254, Percent_Identity=28.3464566929134, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786812, Length=252, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI2367175, Length=272, Percent_Identity=30.8823529411765, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788459, Length=256, Percent_Identity=26.953125, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1789057, Length=266, Percent_Identity=26.3157894736842, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787905, Length=260, Percent_Identity=23.8461538461538, Blast_Score=61, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17561402, Length=256, Percent_Identity=28.515625, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17562910, Length=278, Percent_Identity=28.4172661870504, Blast_Score=87, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI17560676, Length=259, Percent_Identity=28.5714285714286, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17560332, Length=272, Percent_Identity=28.3088235294118, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17559104, Length=272, Percent_Identity=26.8382352941176, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17551412, Length=274, Percent_Identity=28.4671532846715, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17538480, Length=267, Percent_Identity=28.0898876404494, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17563726, Length=267, Percent_Identity=26.9662921348315, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17565030, Length=272, Percent_Identity=27.9411764705882, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17562906, Length=277, Percent_Identity=27.0758122743682, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17562904, Length=272, Percent_Identity=27.5735294117647, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI193204405, Length=277, Percent_Identity=26.7148014440433, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17560220, Length=271, Percent_Identity=26.5682656826568, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17560150, Length=281, Percent_Identity=26.3345195729537, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=264, Percent_Identity=25.7575757575758, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI72000259, Length=269, Percent_Identity=26.3940520446097, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17538486, Length=276, Percent_Identity=25.7246376811594, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=256, Percent_Identity=24.609375, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17531453, Length=274, Percent_Identity=25.1824817518248, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI21355319, Length=262, Percent_Identity=30.1526717557252, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI23397609, Length=263, Percent_Identity=29.6577946768061, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI21357041, Length=255, Percent_Identity=29.0196078431373, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=27.7777777777778, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24644339, Length=259, Percent_Identity=25.8687258687259, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24639444, Length=269, Percent_Identity=27.8810408921933, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27607; Mature: 27607

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLGLANAAAVVVGGSRGMGLATARCLADEGARVAVIGRSRDALDSAVTDLTRRGSPDAL
CCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCE
GLVADIGDDAAVGQAFGELARRWDGELNALVITVGPGAAGTFEDLTDEQWRQAVEDGVLG
EEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHH
MVRCVRAALPLLRKAQWARIVTFSAHSTQRQSVLLPAYTAAKSMLTSVSKNLSLLLAKDE
HHHHHHHHHHHHHHHCHHEEEEEECCCCCCCEEEEHHHHHHHHHHHHHHCCCEEEEEECE
ILVNVISPGSIASESLVGWANSVGVDGRDPYALMEAIGKHFGHPAHMPRAGLPEEIGPVA
EEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
AFLASRRNSYMTGANINVDGGSDFT
HHHHHHCCCEECCCEEEECCCCCCC
>Mature Secondary Structure
MDLGLANAAAVVVGGSRGMGLATARCLADEGARVAVIGRSRDALDSAVTDLTRRGSPDAL
CCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCE
GLVADIGDDAAVGQAFGELARRWDGELNALVITVGPGAAGTFEDLTDEQWRQAVEDGVLG
EEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHH
MVRCVRAALPLLRKAQWARIVTFSAHSTQRQSVLLPAYTAAKSMLTSVSKNLSLLLAKDE
HHHHHHHHHHHHHHHCHHEEEEEECCCCCCCEEEEHHHHHHHHHHHHHHCCCEEEEEECE
ILVNVISPGSIASESLVGWANSVGVDGRDPYALMEAIGKHFGHPAHMPRAGLPEEIGPVA
EEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
AFLASRRNSYMTGANINVDGGSDFT
HHHHHHCCCEECCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]